Rroxscaffold_7G00215880

Chaperone protein dnaJ 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005017
Physical Location & Seq
Forward (+)
66433609 .. 66433941
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00215880.1

Sequence Viewer

Length: 333 bp
ATGGCAACGGCAGCTAGTCCAACTTCATCGCTGTACGAAGTTCTTGGCCTTCCAATGAGTGCAAGTGGTCATGAGATCAAAGCAGCTTATAGGAGACTAGCAAGGAGGTGTCACCCAGATGTTGTCGCCATGAACCAAAAACAAACCTCTGCTACTGAATTCATGAAGATTCATGCAGCCTATGCAACCCTATCGGACCCTGAAAAACGAGCAAACTACGACAGGGGTCTTTACGGGTGTGCTCGGCCTTTCGGGTCTTCGTCTTCATTTTCCTCCGCAACAGCGGCGGCAGCAAAAACTTACCGGAACTGGGAAACTGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

9.12

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 74 5.9e-22 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 276, 284, 287
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 14, 86
AluI AGCT 2 cut(s) 14, 86
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 88
AoxI GGCC 2 cut(s) 46, 245
ApeKI GCWGC 4 cut(s) 11, 83, 176, 290
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 249, 255
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 4 cut(s) 23, 95, 188, 302
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 15, 98
BisI GCNGC 6 cut(s) 12, 84, 177, 285, 288, 291
BlsI GCNGC 6 cut(s) 13, 85, 178, 286, 289, 292
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 319
BmuI ACTGGG 1 cut(s) 319
BoxI GACNNNNGTC 1 cut(s) 225
BpiI GAAGAC 2 cut(s) 249, 255
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 2 cut(s) 314, 322
BseLI CCNNNNNNNGG 1 cut(s) 310
BseNI ACTGG 2 cut(s) 314, 322
BseXI GCAGC 4 cut(s) 23, 95, 188, 302
BshFI GGCC 2 cut(s) 48, 247
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 1 cut(s) 88
BsnI GGCC 2 cut(s) 48, 247
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 3 cut(s) 276, 284, 287
BspANI GGCC 2 cut(s) 48, 247
BspHI TCATGA 2 cut(s) 70, 162
BspLI GGNNCC 1 cut(s) 198
BsrI ACTGG 2 cut(s) 314, 322
BssMI GATC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 4 cut(s) 11, 182, 284, 290
BstPAI GACNNNNGTC 1 cut(s) 225
BstV1I GCAGC 4 cut(s) 23, 95, 188, 302
BstV2I GAAGAC 2 cut(s) 249, 255
BsuRI GGCC 2 cut(s) 48, 247
BtgZI GCGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 329
CciI TCATGA 2 cut(s) 70, 162
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 71, 130, 163, 173
CviJI RGCY 5 cut(s) 14, 48, 86, 179, 247
CviKI_1 RGCY 5 cut(s) 14, 48, 86, 179, 247
CviQI GTAC 1 cut(s) 34
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 158
FaeI CATG 4 cut(s) 74, 133, 166, 176
FaiI YATR 6 cut(s) 72, 90, 131, 164, 174, 183
FatI CATG 4 cut(s) 70, 129, 162, 172
Fnu4HI GCNGC 6 cut(s) 12, 84, 177, 285, 288, 291
Fsp4HI GCNGC 6 cut(s) 12, 84, 177, 285, 288, 291
FspBI CTAG 2 cut(s) 15, 98
GluI GCNGC 6 cut(s) 12, 84, 177, 285, 288, 291
HaeIII GGCC 2 cut(s) 48, 247
HapII CCGG 1 cut(s) 304
Hin1II CATG 4 cut(s) 74, 133, 166, 176
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 304
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 71, 163
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 62, 176, 185
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 182, 284, 290
Hsp92II CATG 4 cut(s) 74, 133, 166, 176
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 6 cut(s) 129, 208, 213, 295, 313, 317
Lsp1109I GCAGC 4 cut(s) 23, 95, 188, 302
MaeI CTAG 2 cut(s) 15, 98
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 3 cut(s) 178, 249, 255
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 3 cut(s) 99, 157, 283
MslI CAYNNNNRTG 1 cut(s) 117
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 11, 182, 284, 290
NdeII GATC 1 cut(s) 75
NlaIII CATG 4 cut(s) 74, 133, 166, 176
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 110
PagI TCATGA 2 cut(s) 70, 162
PfeI GAWTC 1 cut(s) 169
PkrI GCNGC 6 cut(s) 13, 85, 178, 286, 289, 292
PshAI GACNNNNGTC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 117
SatI GCNGC 6 cut(s) 12, 84, 177, 285, 288, 291
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 196
SduI GDGCHC 1 cut(s) 244
SetI ASST 4 cut(s) 16, 88, 110, 149
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 1 cut(s) 158
SsiI CCGC 3 cut(s) 276, 284, 287
SspMI CTAG 2 cut(s) 15, 98
TasI AATT 1 cut(s) 158
TauI GCSGC 2 cut(s) 287, 290
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 1 cut(s) 329
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 11, 83, 176, 290
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 6 cut(s) 15, 146, 151, 161, 179, 255
TspRI CASTG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 158
XspI CTAG 2 cut(s) 15, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.