RLG00000016876

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005017
Physical Location & Seq
Forward (+)
10888645 .. 10889118
474 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016876

Sequence Viewer

Length: 474 bp
ATGCTCTCTGCTCCTTCTTCAACCTCCACACTCTTCACCGCTCCGCTCTTCTCCGCCACTCCCTCCCCCAAATCTCCGCCACGTGTCCGCTTCCATCCCTCTCGGGCCTTCGCCTCCGCCGCCTGCGCTTCCGACGAGACCTCCACGGCGTCGTATCTCGCCCCTCCGACGACGACGACGGCGACCGCCTCCCTCTACGAGATCCTCGGCATCCCCTCCGCCGCCACGTGTCACGAGATCAAAACGGCCTACCGGCGGCTCGCGAGGGTCTGCCACCCCGACGTGGCGGCGATGGAGCGGAAGGACTCGTCGGCCGACGACTTCATGAGGATCCACGACGCCTACTCCACCCTCTCCGACCCCGAAAAGCGCGCCGAGTACGACCGGAAGATGTTCCGGCGGAGCAGGCCGTTGTCGGCGGATTATTCTAGATACTATTCTGGCCGGAATTGGGAGACCGATCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

158

Amino Acids

17.49

Weight (kDa)

8.72

Isoelectric Point (pI)

58.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 65 - 128 1.2e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 41, 46, 298
AccII CGCG 2 cut(s) 263, 372
AclWI GGATC 3 cut(s) 196, 325, 338
AcoI YGGCCR 2 cut(s) 312, 442
AcvI CACGTG 2 cut(s) 83, 228
AcyI GRCGYC 2 cut(s) 149, 339
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 3 cut(s) 255, 283, 451
AflIII ACRYGT 2 cut(s) 82, 227
AgsI TTSAA 1 cut(s) 21
AjiI CACGTC 1 cut(s) 283
Alw26I GTCTC 2 cut(s) 131, 449
AlwI GGATC 3 cut(s) 196, 325, 338
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 5 cut(s) 105, 246, 312, 407, 442
Asp700I GAANNNNTTC 1 cut(s) 392
AspLEI GCGC 3 cut(s) 128, 372, 374
AspS9I GGNCC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 102
BamHI GGATCC 1 cut(s) 330
BauI CACGAG 1 cut(s) 233
BbrPI CACGTG 2 cut(s) 83, 228
BccI CCATC 2 cut(s) 102, 286
BceAI ACGGC 4 cut(s) 162, 195, 261, 394
BcoDI GTCTC 2 cut(s) 131, 449
BfaI CTAG 1 cut(s) 429
BisI GCNGC 4 cut(s) 120, 222, 257, 288
BlsI GCNGC 4 cut(s) 121, 223, 258, 289
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 332
BmsI GCATC 1 cut(s) 219
BsaAI YACGTR 2 cut(s) 83, 228
BsaHI GRCGYC 2 cut(s) 149, 339
BsaI GGTCTC 2 cut(s) 131, 449
BsaJI CCNNGG 2 cut(s) 144, 205
BsaWI WCCGGW 1 cut(s) 384
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 283, 451
Bse118I RCCGGY 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 144, 205
BseGI GGATG 2 cut(s) 94, 210
BseLI CCNNNNNNNGG 3 cut(s) 255, 283, 451
BsePI GCGCGC 1 cut(s) 370
BseX3I CGGCCG 1 cut(s) 312
Bsh1236I CGCG 2 cut(s) 263, 372
Bsh1285I CGRYCG 3 cut(s) 186, 315, 385
BshFI GGCC 5 cut(s) 107, 248, 314, 409, 444
BsiEI CGRYCG 3 cut(s) 186, 315, 385
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 4 cut(s) 253, 385, 397, 445
BslI CCNNNNNNNGG 3 cut(s) 255, 283, 451
BsmAI GTCTC 2 cut(s) 131, 449
BsnI GGCC 5 cut(s) 107, 248, 314, 409, 444
Bso31I GGTCTC 2 cut(s) 131, 449
BsoBI CYCGRG 1 cut(s) 102
Bsp143I GATC 4 cut(s) 201, 237, 330, 460
Bsp68I TCGCGA 1 cut(s) 263
BspANI GGCC 5 cut(s) 107, 248, 314, 409, 444
BspFNI CGCG 2 cut(s) 263, 372
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 3 cut(s) 196, 325, 338
BspQI GCTCTTC 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 131, 449
BsrBI CCGCTC 3 cut(s) 41, 46, 298
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 144, 205
BssHII GCGCGC 1 cut(s) 370
BssMI GATC 4 cut(s) 201, 237, 330, 460
BssNI GRCGYC 2 cut(s) 149, 339
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 38, 53
BstACI GRCGYC 2 cut(s) 149, 339
BstBAI YACGTR 2 cut(s) 83, 228
BstC8I GCNNGC 4 cut(s) 124, 261, 372, 407
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 94, 210
BstFNI CGCG 2 cut(s) 263, 372
BstHHI GCGC 3 cut(s) 128, 372, 374
BstKTI GATC 4 cut(s) 204, 240, 333, 463
BstMAI GTCTC 2 cut(s) 131, 449
BstMBI GATC 4 cut(s) 201, 237, 330, 460
BstMCI CGRYCG 3 cut(s) 186, 315, 385
BstMWI GCNNNNNNNGC 3 cut(s) 119, 125, 406
BstUI CGCG 2 cut(s) 263, 372
BstX2I RGATCY 2 cut(s) 201, 330
BstYI RGATCY 2 cut(s) 201, 330
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 5 cut(s) 107, 248, 314, 409, 444
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 305
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 94, 210
BtsIMutI CAGTG 1 cut(s) 470
BtuMI TCGCGA 1 cut(s) 263
Cac8I GCNNGC 4 cut(s) 124, 261, 372, 407
CciI TCATGA 1 cut(s) 324
CfoI GCGC 3 cut(s) 128, 372, 374
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 105
CseI GACGC 2 cut(s) 138, 347
Csp6I GTAC 1 cut(s) 379
CviAII CATG 1 cut(s) 325
CviJI RGCY 6 cut(s) 107, 248, 259, 314, 409, 444
CviKI_1 RGCY 6 cut(s) 107, 248, 259, 314, 409, 444
CviQI GTAC 1 cut(s) 379
DpnI GATC 4 cut(s) 203, 239, 332, 462
DpnII GATC 4 cut(s) 201, 237, 330, 460
EaeI YGGCCR 2 cut(s) 312, 442
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 2 cut(s) 38, 53
EarI CTCTTC 2 cut(s) 38, 53
EciI GGCGGA 6 cut(s) 43, 66, 106, 208, 415, 434
EclXI CGGCCG 1 cut(s) 312
Eco31I GGTCTC 2 cut(s) 131, 449
Eco52I CGGCCG 1 cut(s) 312
Eco72I CACGTG 2 cut(s) 83, 228
Eco88I CYCGRG 1 cut(s) 102
FaeI CATG 1 cut(s) 328
FaiI YATR 1 cut(s) 326
FatI CATG 1 cut(s) 324
Fnu4HI GCNGC 4 cut(s) 120, 222, 257, 288
FokI GGATG 2 cut(s) 81, 197
Fsp4HI GCNGC 4 cut(s) 120, 222, 257, 288
FspBI CTAG 1 cut(s) 429
GlaI GCGC 3 cut(s) 127, 371, 373
GluI GCNGC 4 cut(s) 120, 222, 257, 288
HaeIII GGCC 5 cut(s) 107, 248, 314, 409, 444
HapII CCGG 4 cut(s) 253, 385, 397, 445
HgaI GACGC 2 cut(s) 138, 347
HhaI GCGC 3 cut(s) 128, 372, 374
Hin1I GRCGYC 2 cut(s) 149, 339
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 3 cut(s) 126, 370, 372
HinP1I GCGC 3 cut(s) 126, 370, 372
HinfI GANTC 1 cut(s) 305
HpaII CCGG 4 cut(s) 253, 385, 397, 445
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 133, 168, 358
Hpy188III TCNNGA 4 cut(s) 233, 262, 325, 429
HpyAV CCTTC 3 cut(s) 24, 118, 295
HpyCH4IV ACGT 3 cut(s) 82, 227, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 125, 406
HpySE526I ACGT 3 cut(s) 82, 227, 282
Hsp92I GRCGYC 2 cut(s) 149, 339
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 3 cut(s) 126, 370, 372
Kzo9I GATC 4 cut(s) 201, 237, 330, 460
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 4 cut(s) 16, 46, 295, 402
LpnPI CCDG 8 cut(s) 136, 266, 391, 398, 410, 426, 454, 458
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 429
MaeII ACGT 3 cut(s) 82, 227, 282
MaeIII GTNAC 1 cut(s) 230
MalI GATC 4 cut(s) 203, 239, 332, 462
MbiI CCGCTC 3 cut(s) 41, 46, 298
MboI GATC 4 cut(s) 201, 237, 330, 460
MboII GAAGA 4 cut(s) 9, 25, 40, 400
MflI RGATCY 2 cut(s) 201, 330
MluCI AATT 1 cut(s) 448
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 3 cut(s) 156, 191, 381
MroXI GAANNNNTTC 1 cut(s) 392
MspI CCGG 4 cut(s) 253, 385, 397, 445
MvnI CGCG 2 cut(s) 263, 372
MwoI GCNNNNNNNGC 3 cut(s) 119, 125, 406
NdeII GATC 4 cut(s) 201, 237, 330, 460
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 1 cut(s) 332
NmeAIII GCCGAG 2 cut(s) 186, 400
NmuCI GTSAC 1 cut(s) 230
NruI TCGCGA 1 cut(s) 263
PagI TCATGA 1 cut(s) 324
PauI GCGCGC 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 179
PdmI GAANNNNTTC 1 cut(s) 392
PkrI GCNGC 4 cut(s) 121, 223, 258, 289
PleI GAGTC 1 cut(s) 299
PmaCI CACGTG 2 cut(s) 83, 228
PmlI CACGTG 2 cut(s) 83, 228
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 2 cut(s) 83, 228
PspCI CACGTG 2 cut(s) 83, 228
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 1 cut(s) 105
PsuI RGATCY 2 cut(s) 201, 330
PteI GCGCGC 1 cut(s) 370
RruI TCGCGA 1 cut(s) 263
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 53
SatI GCNGC 4 cut(s) 120, 222, 257, 288
Sau3AI GATC 4 cut(s) 201, 237, 330, 460
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 299
SetI ASST 5 cut(s) 26, 85, 143, 230, 285
SfaNI GCATC 1 cut(s) 219
Sse9I AATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 429
TaiI ACGT 3 cut(s) 85, 230, 285
TaqII GACCGA 1 cut(s) 473
TasI AATT 1 cut(s) 448
TauI GCSGC 4 cut(s) 122, 224, 259, 290
TscAI CASTG 1 cut(s) 470
TseFI GTSAC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 313
TspRI CASTG 1 cut(s) 470
XbaI TCTAGA 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.