Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005017

Physical Location & Seq

Genomic Coordinates Forward (+)

17016924 .. 17018459

Gene Structure 1536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G162800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTGCAGTCAGCTCAACTTCCACACTGTACGAGGTTCTTGGGCTCACAATGGGTGCAAGTGGGCATGAGATCAAGGCAGCCTACAGGAGGCTAGCCAGAAGCTGCCACCCAGATGTTGTGGCCACGAACCAAAAACAAACGTCCGCTAATGAGTTCATGAAAATCCATGCAGCTTATGCAATCCTGTCAGACCCTGATAAAAGAGCAAACTATGATAGGGATTTCTACAGGTGTCCACAGCCTTTTCGCTCTTCTTCCTATTCGTCTGCGAGCATGGCGGCAGCCGCCTCGGCAATGGCGGGGTCTTCGAGACGGACTTACCGGAATTGGGAGACCGATCAGTGTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

9.12

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17880 AT4G36040
fragaria_vesca	FvH4_1g11760 FvH4_2g01600
malus_domestica	MD02G1131800.v1.1 MD10G1121200.v1.1 MD15G1244700.v1.1
prunus_persica	Prupe.7G168700_v2.0.a1 Prupe.8G162800_v2.0.a1
pyrus_communis	pycom02g10270 pycom10g10440
rosa_chinensis	RchiOBHm_Chr2g0099371 RchiOBHm_Chr6g0244331
rosa_laevigata	RLG00000015366 RLG00000016876
rosa_multiflora	Rmu_sc0006898.1_g000007
rosa_roxburghii	Rroxscaffold_2G00143130 Rroxscaffold_7G00215880
rosa_rugosa	Rorug02G0078900 Rorug05G0508000.1
rosa_samantha	Rh2AG128900 Rh2BG131900 Rh2CG132700 Rh2DG132900 Rh6AG023100 Rh6BG018800 Rh6CG016100 Rh6DG017200
rosa_wichuraiana	Rw2G009920 Rw6G001910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	147, 281, 288, 302
AcoI	YGGCCR	1 cut(s)	123
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	90, 331
AluBI	AGCT	3 cut(s)	15, 105, 176
AluI	AGCT	3 cut(s)	15, 105, 176
Alw26I	GTCTC	2 cut(s)	307, 329
AlwNI	CAGNNNCTG	2 cut(s)	105, 197
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	5 cut(s)	5, 80, 105, 173, 284
AsuNHI	GCTAGC	1 cut(s)	94
BalI	TGGCCA	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	92, 92, 185, 296
BcgI	CGANNNNNNTGC	2 cut(s)	273, 307
BcoDI	GTCTC	2 cut(s)	307, 329
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	3 cut(s)	6, 85, 229
BglI	GCCNNNNNGGC	1 cut(s)	293
BisI	GCNGC	7 cut(s)	6, 81, 106, 174, 282, 285, 288
BlsI	GCNGC	7 cut(s)	7, 82, 107, 175, 283, 286, 289
BmtI	GCTAGC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 331
Bse3DI	GCAATG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	90, 331
BseMI	GCAATG	1 cut(s)	303
BseXI	GCAGC	4 cut(s)	92, 92, 185, 296
BshFI	GGCC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	90, 331
BsmAI	GTCTC	2 cut(s)	307, 329
BsmBI	CGTCTC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	72, 340
BspACI	CCGC	4 cut(s)	147, 281, 288, 302
BspANI	GGCC	1 cut(s)	125
BspHI	TCATGA	1 cut(s)	159
BspMAI	CTGCAG	1 cut(s)	10
BspOI	GCTAGC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	2 cut(s)	72, 340
Bst4CI	ACNGT	1 cut(s)	30
Bst6I	CTCTTC	1 cut(s)	259
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	96, 274
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstKTI	GATC	2 cut(s)	75, 343
BstMAI	GTCTC	2 cut(s)	307, 329
BstMBI	GATC	2 cut(s)	72, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 278, 287, 293
BstSFI	CTRYAG	3 cut(s)	6, 85, 229
BstV1I	GCAGC	4 cut(s)	92, 92, 185, 296
BstV2I	GAAGAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	26, 350
Cac8I	GCNNGC	2 cut(s)	96, 274
CaiI	CAGNNNCTG	2 cut(s)	105, 197
CciI	TCATGA	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	4 cut(s)	68, 160, 170, 277
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	2 cut(s)	74, 342
DpnII	GATC	2 cut(s)	72, 340
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	4 cut(s)	71, 163, 173, 280
FaiI	YATR	6 cut(s)	69, 161, 171, 180, 216, 278
FatI	CATG	4 cut(s)	67, 159, 169, 276
FauI	CCCGC	1 cut(s)	295
Fnu4HI	GCNGC	7 cut(s)	6, 81, 106, 174, 282, 285, 288
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	7 cut(s)	6, 81, 106, 174, 282, 285, 288
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	7 cut(s)	6, 81, 106, 174, 282, 285, 288
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	4 cut(s)	71, 163, 173, 280
HpaII	CCGG	1 cut(s)	325
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	160, 312
Hpy8I	GTNNAC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	4 cut(s)	8, 59, 173, 182
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 278, 287, 293
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	4 cut(s)	71, 163, 173, 280
Kzo9I	GATC	2 cut(s)	72, 340
LguI	GCTCTTC	1 cut(s)	259
LpnPI	CCDG	7 cut(s)	73, 112, 126, 200, 210, 217, 338
Lsp1109I	GCAGC	4 cut(s)	92, 92, 185, 296
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	143
MalI	GATC	2 cut(s)	74, 342
MboI	GATC	2 cut(s)	72, 340
MboII	GAAGA	3 cut(s)	246, 249, 300
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	125
MluCI	AATT	1 cut(s)	328
MluNI	TGGCCA	1 cut(s)	125
MnlI	CCTC	3 cut(s)	28, 84, 301
Mox20I	TGGCCA	1 cut(s)	125
MscI	TGGCCA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	125
MspI	CCGG	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	179, 278, 287, 293
NdeII	GATC	2 cut(s)	72, 340
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	71, 163, 173, 280
NmeAIII	GCCGAG	1 cut(s)	272
PagI	TCATGA	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	259
PkrI	GCNGC	7 cut(s)	7, 82, 107, 175, 283, 286, 289
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	2 cut(s)	105, 197
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	259
SatI	GCNGC	7 cut(s)	6, 81, 106, 174, 282, 285, 288
Sau3AI	GATC	2 cut(s)	72, 340
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	17, 39, 107, 146, 178, 236
SfcI	CTRYAG	3 cut(s)	6, 85, 229
SmiMI	CAYNNNNRTG	1 cut(s)	114
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	4 cut(s)	147, 281, 288, 302
SspMI	CTAG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	30
TaiI	ACGT	1 cut(s)	146
TaqI	TCGA	1 cut(s)	311
TaqII	GACCGA	1 cut(s)	353
TasI	AATT	1 cut(s)	328
TauI	GCSGC	2 cut(s)	284, 290
TscAI	CASTG	2 cut(s)	33, 350
TseI	GCWGC	5 cut(s)	5, 80, 105, 173, 284
TspDTI	ATGAA	2 cut(s)	148, 176
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	2 cut(s)	33, 350
XagI	CCTNNNNNAGG	1 cut(s)	88
XspI	CTAG	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.