Rh6AG023100

Chaperone protein dnaJ 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005017
Physical Location & Seq
Reverse (-)
2731710 .. 2734176
2467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG023100.1

Sequence Viewer

Length: 327 bp
ATGGCAACTGCAGCTAGTCCAACTTCATCGCTGTACGAAGTTCTTGGCCTTCCAATGAGTGCAAGTGGTCATGAGATCAAAGCAGCTTATAGGAGACTAGCAAGGAGGTGTCACCCAGATGTTGTGGCCATGAACCAAAAACAAACCTCTGCTACTGAATTCATGAAGATTCATGCAGCTTATGCAACCCTATCGGACCCTGAAAAACGAGCAAACTACGATAGGAGTCTTTACCGGTGTGCTCGGCCTTTCGGGTCTTCATTTTCCTCCGCAACAGCTGCGGCAGCAAATACTTACCGGAACTGGGAGACTGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

108

Amino Acids

11.99

Weight (kDa)

9.15

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 74 5.6e-22 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 270, 281
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 304
AgeI ACCGGT 1 cut(s) 234
AluBI AGCT 4 cut(s) 14, 86, 179, 278
AluI AGCT 4 cut(s) 14, 86, 179, 278
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 2 cut(s) 88, 302
AoxI GGCC 3 cut(s) 46, 126, 245
ApeKI GCWGC 5 cut(s) 11, 83, 176, 278, 284
ApoI RAATTY 1 cut(s) 158
AsiGI ACCGGT 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 196
BalI TGGCCA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 249
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 5 cut(s) 23, 95, 188, 265, 296
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BcoDI GTCTC 2 cut(s) 88, 302
BfaI CTAG 2 cut(s) 15, 98
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 6 cut(s) 12, 84, 177, 279, 282, 285
BlsI GCNGC 6 cut(s) 13, 85, 178, 280, 283, 286
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 313
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 249
BsaWI WCCGGW 2 cut(s) 234, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 234
Bse1I ACTGG 2 cut(s) 308, 316
BseLI CCNNNNNNNGG 1 cut(s) 304
BseNI ACTGG 2 cut(s) 308, 316
BseXI GCAGC 5 cut(s) 23, 95, 188, 265, 296
BshFI GGCC 3 cut(s) 48, 128, 247
BshTI ACCGGT 1 cut(s) 234
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 2 cut(s) 235, 298
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 2 cut(s) 88, 302
BsnI GGCC 3 cut(s) 48, 128, 247
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 1 cut(s) 75
BspACI CCGC 2 cut(s) 270, 281
BspANI GGCC 3 cut(s) 48, 128, 247
BspHI TCATGA 2 cut(s) 70, 162
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 234
BsrI ACTGG 2 cut(s) 308, 316
BssAI RCCGGY 1 cut(s) 234
BssMI GATC 1 cut(s) 75
BstAPI GCANNNNNTGC 2 cut(s) 182, 278
BstKTI GATC 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 88, 302
BstMBI GATC 1 cut(s) 75
BstMWI GCNNNNNNNGC 4 cut(s) 11, 182, 278, 284
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 5 cut(s) 23, 95, 188, 265, 296
BstV2I GAAGAC 1 cut(s) 249
BsuRI GGCC 3 cut(s) 48, 128, 247
BtgZI GCGATG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 323
CciI TCATGA 2 cut(s) 70, 162
Cfr10I RCCGGY 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 234
CviAII CATG 4 cut(s) 71, 130, 163, 173
CviJI RGCY 7 cut(s) 14, 48, 86, 128, 179, 247, 278
CviKI_1 RGCY 7 cut(s) 14, 48, 86, 128, 179, 247, 278
CviQI GTAC 1 cut(s) 34
DpnI GATC 1 cut(s) 77
DpnII GATC 1 cut(s) 75
EaeI YGGCCR 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 158
FaeI CATG 4 cut(s) 74, 133, 166, 176
FaiI YATR 6 cut(s) 72, 90, 131, 164, 174, 183
FatI CATG 4 cut(s) 70, 129, 162, 172
Fnu4HI GCNGC 6 cut(s) 12, 84, 177, 279, 282, 285
Fsp4HI GCNGC 6 cut(s) 12, 84, 177, 279, 282, 285
FspBI CTAG 2 cut(s) 15, 98
GluI GCNGC 6 cut(s) 12, 84, 177, 279, 282, 285
HaeIII GGCC 3 cut(s) 48, 128, 247
HapII CCGG 2 cut(s) 235, 298
Hin1II CATG 4 cut(s) 74, 133, 166, 176
HinfI GANTC 2 cut(s) 169, 226
HpaII CCGG 2 cut(s) 235, 298
HphI GGTGA 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 71, 163
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 4 cut(s) 11, 62, 176, 185
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 182, 278, 284
Hsp92II CATG 4 cut(s) 74, 133, 166, 176
Kzo9I GATC 1 cut(s) 75
LpnPI CCDG 6 cut(s) 129, 213, 248, 289, 307, 311
Lsp1109I GCAGC 5 cut(s) 23, 95, 188, 265, 296
MaeI CTAG 2 cut(s) 15, 98
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 77
MboI GATC 1 cut(s) 75
MboII GAAGA 2 cut(s) 178, 249
MhlI GDGCHC 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 3 cut(s) 99, 157, 277
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 235, 298
MwoI GCNNNNNNNGC 4 cut(s) 11, 182, 278, 284
NdeII GATC 1 cut(s) 75
NlaIII CATG 4 cut(s) 74, 133, 166, 176
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 110
PagI TCATGA 2 cut(s) 70, 162
PfeI GAWTC 1 cut(s) 169
PinAI ACCGGT 1 cut(s) 234
PkrI GCNGC 6 cut(s) 13, 85, 178, 280, 283, 286
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 117
SatI GCNGC 6 cut(s) 12, 84, 177, 279, 282, 285
Sau3AI GATC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 244
SetI ASST 6 cut(s) 16, 88, 110, 149, 181, 280
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 1 cut(s) 158
SsiI CCGC 2 cut(s) 270, 281
SspMI CTAG 2 cut(s) 15, 98
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 1 cut(s) 323
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 5 cut(s) 11, 83, 176, 278, 284
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 6 cut(s) 15, 146, 151, 161, 179, 249
TspRI CASTG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 158
XspI CTAG 2 cut(s) 15, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.