AT4G36040

DNAJ heat shock N-terminal domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005017
Physical Location & Seq
Reverse (-)
17049152 .. 17050608
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36040.1

Sequence Viewer

Length: 486 bp
ATGCTTTCTTCATCTCCAACTTCCTTTACTCATCCATTTCTCTCTTCTTCTCCGCCTCTATCTCCGATATCTCCGCCGTCTCGCACGGCTCGGATCTCTCCACCTCTCGTCTCCGCCTCTTGCTCATACACCTACACGGAAGATTCGCCGAGACTGCATCAGATCCCGCGGCGATTGACGACGGTGCCAGCTTCGCTTTACGATGTTCTTGAGGTTCCTTTAGGCGCGACGAGTCAGGATATCAAATCGGCTTACCGGAGATTAGCCAGGATCTGCCATCCAGACGTGGCGGGAACTGATCGGACTTCTTCTTCATCGGCGGATGAATTCATGAAGATCCATGCCGCTTACTGTACGCTTTCTGATCCTGAGAAACGCTCCGTTTATGATCGGAGGATGTTGCGACGGAGCCGTCCTTTGACCGTCGGAACCTCCGGGTTGGGAAGCTACGTCGGACGGAACTGGGAAACCGATCAGTGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

161

Amino Acids

17.82

Weight (kDa)

9.23

Isoelectric Point (pI)

79.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 66 - 130 1.1e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 184
AccII CGCG 2 cut(s) 169, 227
AciI CCGC 8 cut(s) 53, 74, 114, 167, 169, 290, 320, 345
AclWI GGATC 5 cut(s) 101, 157, 278, 331, 359
AcsI RAATTY 1 cut(s) 326
AfaI GTAC 1 cut(s) 355
AjiI CACGTC 1 cut(s) 286
AjnI CCWGG 1 cut(s) 266
AluBI AGCT 2 cut(s) 191, 447
AluI AGCT 2 cut(s) 191, 447
Alw26I GTCTC 3 cut(s) 84, 115, 145
AlwI GGATC 5 cut(s) 101, 157, 278, 331, 359
AlwNI CAGNNNCTG 1 cut(s) 273
ApoI RAATTY 1 cut(s) 326
AspLEI GCGC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 436
BanI GGYRCC 1 cut(s) 184
BccI CCATC 1 cut(s) 285
BceAI ACGGC 3 cut(s) 61, 102, 396
BciT130I CCWGG 1 cut(s) 268
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 3 cut(s) 84, 115, 145
BisI GCNGC 2 cut(s) 170, 345
BlsI GCNGC 2 cut(s) 171, 346
Bme1390I CCNGG 2 cut(s) 268, 436
BmgBI CACGTC 1 cut(s) 286
BmiI GGNNCC 4 cut(s) 186, 216, 410, 430
BmrFI CCNGG 2 cut(s) 268, 436
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 1 cut(s) 166
BmuI ACTGGG 1 cut(s) 472
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 467
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 4 cut(s) 31, 277, 328, 402
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 1 cut(s) 467
Bsh1236I CGCG 2 cut(s) 169, 227
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 2 cut(s) 256, 435
BsmAI GTCTC 3 cut(s) 84, 115, 145
BsmBI CGTCTC 2 cut(s) 84, 115
Bsp143I GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
BspACI CCGC 8 cut(s) 53, 74, 114, 167, 169, 290, 320, 345
BspCNI CTCAG 1 cut(s) 361
BspFNI CGCG 2 cut(s) 169, 227
BspHI TCATGA 1 cut(s) 330
BspLI GGNNCC 4 cut(s) 186, 216, 410, 430
BspPI GGATC 5 cut(s) 101, 157, 278, 331, 359
BspT107I GGYRCC 1 cut(s) 184
BsrI ACTGG 1 cut(s) 467
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 3 cut(s) 184, 353, 424
Bst6I CTCTTC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 167
BstF5I GGATG 4 cut(s) 31, 277, 328, 402
BstFNI CGCG 2 cut(s) 169, 227
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 8 cut(s) 96, 165, 273, 301, 339, 367, 391, 475
BstMAI GTCTC 3 cut(s) 84, 115, 145
BstMBI GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
BstMWI GCNNNNNNNGC 2 cut(s) 154, 193
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 266, 434
BstUI CGCG 2 cut(s) 169, 227
BstX2I RGATCY 4 cut(s) 93, 162, 270, 336
BstYI RGATCY 4 cut(s) 93, 162, 270, 336
BtgI CCRYGG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 286
BtsCI GGATG 4 cut(s) 31, 277, 328, 402
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 273
CciI TCATGA 1 cut(s) 330
CfoI GCGC 1 cut(s) 227
Cfr42I CCGCGG 1 cut(s) 170
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 331, 341
CviJI RGCY 6 cut(s) 89, 191, 251, 266, 411, 447
CviKI_1 RGCY 6 cut(s) 89, 191, 251, 266, 411, 447
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 369
DpnI GATC 8 cut(s) 95, 164, 272, 300, 338, 366, 390, 474
DpnII GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
DrdI GACNNNNNNGTC 1 cut(s) 411
DseDI GACNNNNNNGTC 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 4 cut(s) 42, 63, 103, 335
Eco32I GATATC 2 cut(s) 69, 241
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 1 cut(s) 266
EcoRV GATATC 2 cut(s) 69, 241
Esp3I CGTCTC 2 cut(s) 84, 115
FaeI CATG 2 cut(s) 334, 344
FaiI YATR 4 cut(s) 127, 332, 342, 387
FatI CATG 2 cut(s) 330, 340
FauI CCCGC 2 cut(s) 174, 283
Fnu4HI GCNGC 2 cut(s) 170, 345
FokI GGATG 4 cut(s) 18, 264, 335, 409
Fsp4HI GCNGC 2 cut(s) 170, 345
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 170, 345
HapII CCGG 2 cut(s) 256, 435
HhaI GCGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 334, 344
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 2 cut(s) 143, 232
HpaII CCGG 2 cut(s) 256, 435
Hpy188I TCNGA 8 cut(s) 66, 93, 162, 303, 364, 393, 428, 455
Hpy188III TCNNGA 5 cut(s) 209, 236, 281, 331, 368
Hpy99I CGWCG 5 cut(s) 184, 232, 408, 428, 455
HpyCH4III ACNGT 3 cut(s) 184, 353, 424
HpyCH4IV ACGT 2 cut(s) 285, 450
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 193
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 285, 450
Hsp92II CATG 2 cut(s) 334, 344
HspAI GCGC 1 cut(s) 225
KspI CCGCGG 1 cut(s) 170
Kzo9I GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
LmnI GCTCC 2 cut(s) 383, 408
LpnPI CCDG 9 cut(s) 201, 221, 253, 269, 280, 294, 381, 448, 448
LweI GCATC 1 cut(s) 166
MaeII ACGT 2 cut(s) 285, 450
MalI GATC 8 cut(s) 95, 164, 272, 300, 338, 366, 390, 474
MboI GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
MboII GAAGA 6 cut(s) 36, 39, 152, 300, 303, 346
MflI RGATCY 4 cut(s) 93, 162, 270, 336
MluCI AATT 1 cut(s) 326
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 3 cut(s) 41, 406, 433
MnlI CCTC 6 cut(s) 66, 114, 127, 205, 387, 442
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 256, 435
MspR9I CCNGG 2 cut(s) 268, 436
MvaI CCWGG 1 cut(s) 268
MvnI CGCG 2 cut(s) 169, 227
MwoI GCNNNNNNNGC 2 cut(s) 154, 193
NciI CCSGG 1 cut(s) 436
NdeII GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
NlaIII CATG 2 cut(s) 334, 344
NlaIV GGNNCC 4 cut(s) 186, 216, 410, 430
NmeAIII GCCGAG 1 cut(s) 174
PagI TCATGA 1 cut(s) 330
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 171, 346
PleI GAGTC 1 cut(s) 240
PpsI GAGTC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 4 cut(s) 186, 216, 410, 430
PstNI CAGNNNCTG 1 cut(s) 273
PsuI RGATCY 4 cut(s) 93, 162, 270, 336
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SacII CCGCGG 1 cut(s) 170
SatI GCNGC 2 cut(s) 170, 345
Sau3AI GATC 8 cut(s) 93, 162, 270, 298, 336, 364, 388, 472
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 268, 436
SetI ASST 8 cut(s) 106, 134, 193, 216, 288, 434, 449, 453
SfaNI GCATC 1 cut(s) 166
Sfr303I CCGCGG 1 cut(s) 170
SgrBI CCGCGG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 326
SsiI CCGC 8 cut(s) 53, 74, 114, 167, 169, 290, 320, 345
StyD4I CCNGG 2 cut(s) 266, 434
TaaI ACNGT 3 cut(s) 184, 353, 424
TaiI ACGT 2 cut(s) 288, 453
TasI AATT 1 cut(s) 326
TauI GCSGC 2 cut(s) 172, 347
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 1 cut(s) 482
TspDTI ATGAA 4 cut(s) 303, 319, 339, 347
TspGWI ACGGA 4 cut(s) 152, 370, 421, 472
TspRI CASTG 1 cut(s) 482
XapI RAATTY 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.