Rroxscaffold_2G00143130

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005017
Physical Location & Seq
Reverse (-)
81160834 .. 81161304
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143130.1

Sequence Viewer

Length: 471 bp
ATGCTCTCTGCTCCTTCTTCAACCTCCACACTCTTCACCGCTCCGCTCTTCTCCGCCACTCCCTCCCCCAAATCGCCGCCACGTGTCCGCTTCCATCCCGCTCGAGCCTTCGCCTCCGCCGCCTGCGCTTCCGACGAGACCTCCACGGCGTCGTATCTCGCCCGTCCTCCTCCTCCGACTACCGCCTCCCTCTACGAGATCCTCGGCATCCCCGCCGCCGCCACGTGTCACGAGATCAAAACGGCCTACCGGCGGCTCGCGAGGGTCTGCCACCCCGACGTGGCGGCGATGGAGCGGAAGGACTCGTCGGCCGACGAGTTCATGAGGATCCACGACGCCTACTGCACCCTCTCCGACCCCGAAAAGCGCGCCGAGTACGACCGGAAGATGTTTCGGCGGAGCAGGCCGTTGTCGGCGGATTATTCTAGATACTATTCTGGCCGGAATTGGGAGACCGATCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

156

Amino Acids

17.46

Weight (kDa)

8.87

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 64 - 127 2.4e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 41, 46, 101, 295
AccII CGCG 2 cut(s) 260, 369
AclWI GGATC 3 cut(s) 193, 322, 335
AcoI YGGCCR 2 cut(s) 309, 439
AcvI CACGTG 2 cut(s) 83, 225
AcyI GRCGYC 2 cut(s) 149, 336
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 3 cut(s) 252, 280, 448
AflIII ACRYGT 2 cut(s) 82, 224
AgsI TTSAA 1 cut(s) 21
AjiI CACGTC 1 cut(s) 280
Alw26I GTCTC 2 cut(s) 131, 446
AlwI GGATC 3 cut(s) 193, 322, 335
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 4 cut(s) 243, 309, 404, 439
AspLEI GCGC 3 cut(s) 128, 369, 371
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 102
BamHI GGATCC 1 cut(s) 327
BauI CACGAG 1 cut(s) 230
BbrPI CACGTG 2 cut(s) 83, 225
BccI CCATC 2 cut(s) 102, 283
BceAI ACGGC 3 cut(s) 162, 258, 391
BcoDI GTCTC 2 cut(s) 131, 446
BfaI CTAG 1 cut(s) 426
BisI GCNGC 6 cut(s) 77, 120, 216, 219, 254, 285
BlsI GCNGC 6 cut(s) 78, 121, 217, 220, 255, 286
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 1 cut(s) 216
BsaAI YACGTR 2 cut(s) 83, 225
BsaHI GRCGYC 2 cut(s) 149, 336
BsaI GGTCTC 2 cut(s) 131, 446
BsaJI CCNNGG 2 cut(s) 144, 202
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 280, 448
Bse118I RCCGGY 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 144, 202
BseGI GGATG 2 cut(s) 94, 207
BseLI CCNNNNNNNGG 3 cut(s) 252, 280, 448
BsePI GCGCGC 1 cut(s) 367
BseRI GAGGAG 2 cut(s) 159, 162
BseX3I CGGCCG 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 328
Bsh1236I CGCG 2 cut(s) 260, 369
Bsh1285I CGRYCG 2 cut(s) 312, 382
BshFI GGCC 4 cut(s) 245, 311, 406, 441
BsiEI CGRYCG 2 cut(s) 312, 382
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 3 cut(s) 250, 382, 442
BslI CCNNNNNNNGG 3 cut(s) 252, 280, 448
BsmAI GTCTC 2 cut(s) 131, 446
BsnI GGCC 4 cut(s) 245, 311, 406, 441
Bso31I GGTCTC 2 cut(s) 131, 446
BsoBI CYCGRG 1 cut(s) 102
Bsp143I GATC 4 cut(s) 198, 234, 327, 457
Bsp68I TCGCGA 1 cut(s) 260
BspANI GGCC 4 cut(s) 245, 311, 406, 441
BspFNI CGCG 2 cut(s) 260, 369
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 3 cut(s) 193, 322, 335
BspQI GCTCTTC 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 131, 446
BsrBI CCGCTC 4 cut(s) 41, 46, 101, 295
BsrFI RCCGGY 1 cut(s) 249
BssAI RCCGGY 1 cut(s) 249
BssECI CCNNGG 2 cut(s) 144, 202
BssHII GCGCGC 1 cut(s) 367
BssMI GATC 4 cut(s) 198, 234, 327, 457
BssNI GRCGYC 2 cut(s) 149, 336
BssSI CACGAG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 230
Bst6I CTCTTC 2 cut(s) 38, 53
BstACI GRCGYC 2 cut(s) 149, 336
BstBAI YACGTR 2 cut(s) 83, 225
BstC8I GCNNGC 4 cut(s) 124, 258, 369, 404
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 94, 207
BstFNI CGCG 2 cut(s) 260, 369
BstHHI GCGC 3 cut(s) 128, 369, 371
BstKTI GATC 4 cut(s) 201, 237, 330, 460
BstMAI GTCTC 2 cut(s) 131, 446
BstMBI GATC 4 cut(s) 198, 234, 327, 457
BstMCI CGRYCG 2 cut(s) 312, 382
BstMWI GCNNNNNNNGC 3 cut(s) 119, 125, 403
BstUI CGCG 2 cut(s) 260, 369
BstX2I RGATCY 2 cut(s) 198, 327
BstYI RGATCY 2 cut(s) 198, 327
BstZI CGGCCG 1 cut(s) 309
BsuRI GGCC 4 cut(s) 245, 311, 406, 441
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 302
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 94, 207
BtsIMutI CAGTG 1 cut(s) 467
BtuMI TCGCGA 1 cut(s) 260
Cac8I GCNNGC 4 cut(s) 124, 258, 369, 404
CciI TCATGA 1 cut(s) 321
CfoI GCGC 3 cut(s) 128, 369, 371
Cfr10I RCCGGY 1 cut(s) 249
CseI GACGC 2 cut(s) 138, 344
Csp6I GTAC 1 cut(s) 376
CviAII CATG 1 cut(s) 322
CviJI RGCY 6 cut(s) 107, 245, 256, 311, 406, 441
CviKI_1 RGCY 6 cut(s) 107, 245, 256, 311, 406, 441
CviQI GTAC 1 cut(s) 376
DpnI GATC 4 cut(s) 200, 236, 329, 459
DpnII GATC 4 cut(s) 198, 234, 327, 457
EaeI YGGCCR 2 cut(s) 309, 439
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 2 cut(s) 38, 53
EarI CTCTTC 2 cut(s) 38, 53
EciI GGCGGA 4 cut(s) 43, 106, 412, 431
EclXI CGGCCG 1 cut(s) 309
Eco31I GGTCTC 2 cut(s) 131, 446
Eco52I CGGCCG 1 cut(s) 309
Eco72I CACGTG 2 cut(s) 83, 225
Eco88I CYCGRG 1 cut(s) 102
FaeI CATG 1 cut(s) 325
FaiI YATR 1 cut(s) 323
FatI CATG 1 cut(s) 321
FauI CCCGC 2 cut(s) 106, 220
Fnu4HI GCNGC 6 cut(s) 77, 120, 216, 219, 254, 285
FokI GGATG 2 cut(s) 81, 194
Fsp4HI GCNGC 6 cut(s) 77, 120, 216, 219, 254, 285
FspBI CTAG 1 cut(s) 426
GlaI GCGC 3 cut(s) 127, 368, 370
GluI GCNGC 6 cut(s) 77, 120, 216, 219, 254, 285
HaeIII GGCC 4 cut(s) 245, 311, 406, 441
HapII CCGG 3 cut(s) 250, 382, 442
HgaI GACGC 2 cut(s) 138, 344
HhaI GCGC 3 cut(s) 128, 369, 371
Hin1I GRCGYC 2 cut(s) 149, 336
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 3 cut(s) 126, 367, 369
HinP1I GCGC 3 cut(s) 126, 367, 369
HinfI GANTC 1 cut(s) 302
HpaII CCGG 3 cut(s) 250, 382, 442
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 133, 177, 355
Hpy188III TCNNGA 4 cut(s) 230, 259, 322, 426
Hpy99I CGWCG 6 cut(s) 137, 154, 281, 310, 317, 338
HpyAV CCTTC 3 cut(s) 24, 118, 292
HpyCH4IV ACGT 3 cut(s) 82, 224, 279
HpyCH4V TGCA 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 125, 403
HpySE526I ACGT 3 cut(s) 82, 224, 279
Hsp92I GRCGYC 2 cut(s) 149, 336
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 3 cut(s) 126, 367, 369
Kzo9I GATC 4 cut(s) 198, 234, 327, 457
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 4 cut(s) 16, 46, 292, 399
LpnPI CCDG 7 cut(s) 136, 263, 388, 395, 423, 451, 455
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 426
MaeII ACGT 3 cut(s) 82, 224, 279
MaeIII GTNAC 1 cut(s) 227
MalI GATC 4 cut(s) 200, 236, 329, 459
MbiI CCGCTC 4 cut(s) 41, 46, 101, 295
MboI GATC 4 cut(s) 198, 234, 327, 457
MboII GAAGA 4 cut(s) 9, 25, 40, 397
MflI RGATCY 2 cut(s) 198, 327
MluCI AATT 1 cut(s) 445
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 3 cut(s) 156, 200, 378
MspI CCGG 3 cut(s) 250, 382, 442
MvnI CGCG 2 cut(s) 260, 369
MwoI GCNNNNNNNGC 3 cut(s) 119, 125, 403
NdeII GATC 4 cut(s) 198, 234, 327, 457
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 329
NmeAIII GCCGAG 2 cut(s) 183, 397
NmuCI GTSAC 1 cut(s) 227
NruI TCGCGA 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 102
PagI TCATGA 1 cut(s) 321
PauI GCGCGC 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 53
PkrI GCNGC 6 cut(s) 78, 121, 217, 220, 255, 286
PleI GAGTC 1 cut(s) 296
PmaCI CACGTG 2 cut(s) 83, 225
PmlI CACGTG 2 cut(s) 83, 225
PpsI GAGTC 1 cut(s) 296
Ppu21I YACGTR 2 cut(s) 83, 225
PspCI CACGTG 2 cut(s) 83, 225
PspN4I GGNNCC 1 cut(s) 329
PspXI VCTCGAGB 1 cut(s) 102
PsuI RGATCY 2 cut(s) 198, 327
PteI GCGCGC 1 cut(s) 367
RruI TCGCGA 1 cut(s) 260
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 53
SatI GCNGC 6 cut(s) 77, 120, 216, 219, 254, 285
Sau3AI GATC 4 cut(s) 198, 234, 327, 457
SchI GAGTC 1 cut(s) 296
SetI ASST 5 cut(s) 26, 85, 143, 227, 282
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 445
SspMI CTAG 1 cut(s) 426
TaiI ACGT 3 cut(s) 85, 227, 282
TaqI TCGA 1 cut(s) 103
TaqII GACCGA 1 cut(s) 470
TasI AATT 1 cut(s) 445
TauI GCSGC 6 cut(s) 79, 122, 218, 221, 256, 287
TscAI CASTG 1 cut(s) 467
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 1 cut(s) 310
TspRI CASTG 1 cut(s) 467
XbaI TCTAGA 1 cut(s) 425
XhoI CTCGAG 1 cut(s) 102
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.