FvH4_2g01600

Chaperone protein dnaJ 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005017
Physical Location & Seq
Reverse (-)
1458569 .. 1458898
330 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01600.t1

Sequence Viewer

Length: 330 bp
ATGGCTACTGCAGCTAGTCCAACATCATCACTGTACGAAGTTCTTGGCCTTCCAATGAGTGCAAGTGATCATGAGATCAAAGCAGCTTATAGAAGACTAGCCAGAAGGTGTCACCCAGATGTTGTGGCCATGAACCAAAAACAGACCTCGGCTACTGAATTCATGAAGACTCATGCAGCTTATGCAACCCTATCGGACCCAGACAAACGAGCGAACTATGATAGGGATCTTTACCGATGTGCTCGGCCTCTCAGGTCTTCGTCTTCGCTTTCCTCCTCAACAGCTGCCGCAAATGTTTACCGGAACTGGGAGACTGACCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

110

Amino Acids

12.19

Weight (kDa)

8.88

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 11 - 74 6.9e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 307
AluBI AGCT 4 cut(s) 14, 86, 179, 284
AluI AGCT 4 cut(s) 14, 86, 179, 284
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 305
AlwI GGATC 1 cut(s) 234
AoxI GGCC 3 cut(s) 46, 126, 245
ApeKI GCWGC 4 cut(s) 11, 83, 176, 284
ApoI RAATTY 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 1 cut(s) 196
BalI TGGCCA 1 cut(s) 128
BbsI GAAGAC 4 cut(s) 100, 173, 249, 255
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 4 cut(s) 23, 95, 188, 271
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BclI TGATCA 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 2 cut(s) 15, 98
BfmI CTRYAG 1 cut(s) 9
BisI GCNGC 5 cut(s) 12, 84, 177, 285, 288
BlsI GCNGC 5 cut(s) 13, 85, 178, 286, 289
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 198
BmrI ACTGGG 1 cut(s) 316
BmuI ACTGGG 1 cut(s) 316
BpiI GAAGAC 4 cut(s) 100, 173, 249, 255
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 311, 319
Bse8I GATNNNNATC 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 265
BseNI ACTGG 2 cut(s) 311, 319
BseRI GAGGAG 1 cut(s) 265
BseXI GCAGC 4 cut(s) 23, 95, 188, 271
BshFI GGCC 3 cut(s) 48, 128, 247
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 305
BsnI GGCC 3 cut(s) 48, 128, 247
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 3 cut(s) 67, 75, 226
BspACI CCGC 1 cut(s) 288
BspANI GGCC 3 cut(s) 48, 128, 247
BspCNI CTCAG 1 cut(s) 264
BspHI TCATGA 2 cut(s) 70, 162
BspLI GGNNCC 1 cut(s) 198
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 234
BsrI ACTGG 2 cut(s) 311, 319
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 3 cut(s) 67, 75, 226
Bst4CI ACNGT 1 cut(s) 33
BstAPI GCANNNNNTGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 251
BstKTI GATC 3 cut(s) 70, 78, 229
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 3 cut(s) 67, 75, 226
BstMWI GCNNNNNNNGC 2 cut(s) 11, 182
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 4 cut(s) 23, 95, 188, 271
BstV2I GAAGAC 4 cut(s) 100, 173, 249, 255
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 3 cut(s) 48, 128, 247
BtsIMutI CAGTG 2 cut(s) 29, 326
CciI TCATGA 2 cut(s) 70, 162
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 34
CviAII CATG 4 cut(s) 71, 130, 163, 173
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 251
DpnI GATC 3 cut(s) 69, 77, 228
DpnII GATC 3 cut(s) 67, 75, 226
EaeI YGGCCR 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 158
FaeI CATG 4 cut(s) 74, 133, 166, 176
FaiI YATR 7 cut(s) 72, 90, 131, 164, 174, 183, 219
FatI CATG 4 cut(s) 70, 129, 162, 172
FbaI TGATCA 1 cut(s) 67
Fnu4HI GCNGC 5 cut(s) 12, 84, 177, 285, 288
Fsp4HI GCNGC 5 cut(s) 12, 84, 177, 285, 288
FspBI CTAG 2 cut(s) 15, 98
GluI GCNGC 5 cut(s) 12, 84, 177, 285, 288
HaeIII GGCC 3 cut(s) 48, 128, 247
HapII CCGG 1 cut(s) 301
Hin1II CATG 4 cut(s) 74, 133, 166, 176
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 301
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 71, 163
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 2 cut(s) 59, 99
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 4 cut(s) 11, 62, 176, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 182
HpyF3I CTNAG 1 cut(s) 251
Hsp92II CATG 4 cut(s) 74, 133, 166, 176
Ksp22I TGATCA 1 cut(s) 67
Kzo9I GATC 3 cut(s) 67, 75, 226
LpnPI CCDG 7 cut(s) 115, 129, 213, 238, 292, 310, 314
Lsp1109I GCAGC 4 cut(s) 23, 95, 188, 271
MaeI CTAG 2 cut(s) 15, 98
MaeIII GTNAC 1 cut(s) 110
MalI GATC 3 cut(s) 69, 77, 228
MboI GATC 3 cut(s) 67, 75, 226
MboII GAAGA 4 cut(s) 105, 178, 249, 255
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 128
MluCI AATT 1 cut(s) 158
MluNI TGGCCA 1 cut(s) 128
MlyI GAGTC 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 4 cut(s) 157, 258, 283, 286
Mox20I TGGCCA 1 cut(s) 128
MscI TGGCCA 1 cut(s) 128
MslI CAYNNNNRTG 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 11, 182
NdeII GATC 3 cut(s) 67, 75, 226
NlaIII CATG 4 cut(s) 74, 133, 166, 176
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 2 cut(s) 128, 223
NmuCI GTSAC 1 cut(s) 110
PagI TCATGA 2 cut(s) 70, 162
PkrI GCNGC 5 cut(s) 13, 85, 178, 286, 289
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 117
SatI GCNGC 5 cut(s) 12, 84, 177, 285, 288
Sau3AI GATC 3 cut(s) 67, 75, 226
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 163
SduI GDGCHC 1 cut(s) 244
SetI ASST 7 cut(s) 16, 88, 110, 149, 181, 257, 286
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 1 cut(s) 158
SsiI CCGC 1 cut(s) 288
SspMI CTAG 2 cut(s) 15, 98
TaaI ACNGT 1 cut(s) 33
TasI AATT 1 cut(s) 158
TauI GCSGC 1 cut(s) 290
TscAI CASTG 2 cut(s) 36, 326
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 11, 83, 176, 284
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 146, 151, 179
TspRI CASTG 2 cut(s) 36, 326
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 1 cut(s) 158
XspI CTAG 2 cut(s) 15, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.