FvH4_1g11760

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005017
Physical Location & Seq
Forward (+)
6434648 .. 6435914
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11760.t1

Sequence Viewer

Length: 462 bp
ATGCTCTCTGCTTCTTCTTCCACCACCTCCACAATCTTCACCGCTCCCCTCTTCTCCGCCACGCCCTCGCCCAAGTCCCTGCCACGTGTCCGCTTCCACCCCCCTCGAGCCTTCTCCTCCGCCGCCTGCGCTTCCGACCAGACCGCCACGGCCTCGTATCTCGTCTCTGCTCCTCATCATCCGACCTCGCTCTACGACATCCTCGGCATCCCCGCCTCCTCCACGTGTCACGAGATCAAGACTGCATACCGGCGACTGGCAAGAGTCTGCCACCCCGACGTGGCGGCGGAGGACTCGTCGGCCGACGAGTTCATGAAGATCCACGACGCCTACTCCACGCTGTCCGACCCCGAAAAGCGCGCCGAGTACGACCAGAAGACGTTCCGGCGGATCAGGCCGTTGTCGTCGGATTACTCCAGGTACTTCACCGGCCGGAATTGGGAGACCGATCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

7.73

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 64 - 124 3.4e-21 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 44
AccII CGCG 1 cut(s) 360
AclWI GGATC 2 cut(s) 313, 398
AcoI YGGCCR 2 cut(s) 300, 430
AcvI CACGTG 2 cut(s) 86, 225
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 368, 422
AfiI CCNNNNNNNGG 3 cut(s) 256, 280, 439
AflIII ACRYGT 2 cut(s) 85, 224
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 1 cut(s) 416
Alw26I GTCTC 2 cut(s) 169, 437
AlwI GGATC 2 cut(s) 313, 398
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 4 cut(s) 150, 300, 395, 430
Asp700I GAANNNNTTC 1 cut(s) 380
AspLEI GCGC 3 cut(s) 131, 360, 362
AsuHPI GGTGA 2 cut(s) 31, 418
AvaI CYCGRG 1 cut(s) 105
BauI CACGAG 1 cut(s) 230
BbrPI CACGTG 2 cut(s) 86, 225
BbsI GAAGAC 1 cut(s) 383
BceAI ACGGC 2 cut(s) 165, 382
BciT130I CCWGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 169, 437
BisI GCNGC 2 cut(s) 123, 285
BlsI GCNGC 2 cut(s) 124, 286
Bme1390I CCNGG 1 cut(s) 418
BmeT110I CYCGRG 1 cut(s) 105
BmgBI CACGTC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 418
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 383
BpmI CTGGAG 1 cut(s) 400
BsaAI YACGTR 2 cut(s) 86, 225
BsaHI GRCGYC 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 437
BsaJI CCNNGG 2 cut(s) 147, 202
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 256, 280, 439
Bse118I RCCGGY 2 cut(s) 249, 428
Bse1I ACTGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 418
BseDI CCNNGG 2 cut(s) 147, 202
BseGI GGATG 3 cut(s) 178, 198, 207
BseLI CCNNNNNNNGG 3 cut(s) 256, 280, 439
BseNI ACTGG 1 cut(s) 261
BsePI GCGCGC 1 cut(s) 358
BseRI GAGGAG 3 cut(s) 106, 162, 208
BseX3I CGGCCG 2 cut(s) 300, 430
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 2 cut(s) 303, 433
BshFI GGCC 4 cut(s) 152, 302, 397, 432
BsiEI CGRYCG 2 cut(s) 303, 433
BsiHKCI CYCGRG 1 cut(s) 105
BsiSI CCGG 4 cut(s) 250, 385, 429, 433
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 256, 280, 439
BsmAI GTCTC 2 cut(s) 169, 437
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 61
BsnI GGCC 4 cut(s) 152, 302, 397, 432
Bso31I GGTCTC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 105
Bsp143I GATC 4 cut(s) 234, 318, 390, 448
BspANI GGCC 4 cut(s) 152, 302, 397, 432
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 312
BspPI GGATC 2 cut(s) 313, 398
BspTNI GGTCTC 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 249, 428
BsrI ACTGG 1 cut(s) 261
BssAI RCCGGY 2 cut(s) 249, 428
BssECI CCNNGG 2 cut(s) 147, 202
BssHII GCGCGC 1 cut(s) 358
BssMI GATC 4 cut(s) 234, 318, 390, 448
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 230
Bst2BI CACGAG 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 327
BstBAI YACGTR 2 cut(s) 86, 225
BstC8I GCNNGC 2 cut(s) 127, 360
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 178, 198, 207
BstFNI CGCG 1 cut(s) 360
BstHHI GCGC 3 cut(s) 131, 360, 362
BstKTI GATC 4 cut(s) 237, 321, 393, 451
BstMAI GTCTC 2 cut(s) 169, 437
BstMBI GATC 4 cut(s) 234, 318, 390, 448
BstMCI CGRYCG 2 cut(s) 303, 433
BstMWI GCNNNNNNNGC 2 cut(s) 128, 394
BstNI CCWGG 1 cut(s) 418
BstSCI CCNGG 1 cut(s) 416
BstUI CGCG 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BstZI CGGCCG 2 cut(s) 300, 430
BsuRI GGCC 4 cut(s) 152, 302, 397, 432
BtgI CCRYGG 1 cut(s) 147
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 3 cut(s) 178, 198, 207
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 127, 360
CciI TCATGA 1 cut(s) 312
CfoI GCGC 3 cut(s) 131, 360, 362
Cfr10I RCCGGY 2 cut(s) 249, 428
CseI GACGC 1 cut(s) 335
Csp6I GTAC 2 cut(s) 367, 421
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 110, 152, 302, 397, 432
CviKI_1 RGCY 5 cut(s) 110, 152, 302, 397, 432
CviQI GTAC 2 cut(s) 367, 421
DpnI GATC 4 cut(s) 236, 320, 392, 450
DpnII GATC 4 cut(s) 234, 318, 390, 448
EaeI YGGCCR 2 cut(s) 300, 430
EagI CGGCCG 2 cut(s) 300, 430
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EciI GGCGGA 4 cut(s) 46, 109, 302, 403
EclXI CGGCCG 2 cut(s) 300, 430
Eco31I GGTCTC 1 cut(s) 437
Eco52I CGGCCG 2 cut(s) 300, 430
Eco72I CACGTG 2 cut(s) 86, 225
Eco88I CYCGRG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 416
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 316
FaiI YATR 2 cut(s) 247, 314
FaqI GGGAC 1 cut(s) 61
FatI CATG 1 cut(s) 312
FauI CCCGC 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 123, 285
FokI GGATG 3 cut(s) 165, 185, 194
Fsp4HI GCNGC 2 cut(s) 123, 285
GlaI GCGC 3 cut(s) 130, 359, 361
GluI GCNGC 2 cut(s) 123, 285
GsuI CTGGAG 1 cut(s) 400
HaeIII GGCC 4 cut(s) 152, 302, 397, 432
HapII CCGG 4 cut(s) 250, 385, 429, 433
HgaI GACGC 1 cut(s) 335
HhaI GCGC 3 cut(s) 131, 360, 362
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 3 cut(s) 129, 358, 360
HinP1I GCGC 3 cut(s) 129, 358, 360
HinfI GANTC 2 cut(s) 264, 293
HpaII CCGG 4 cut(s) 250, 385, 429, 433
HphI GGTGA 2 cut(s) 31, 418
Hpy188I TCNGA 4 cut(s) 136, 183, 346, 409
Hpy188III TCNNGA 3 cut(s) 230, 238, 313
Hpy99I CGWCG 5 cut(s) 281, 301, 308, 329, 409
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 4 cut(s) 85, 224, 279, 380
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 394
HpySE526I ACGT 4 cut(s) 85, 224, 279, 380
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 3 cut(s) 129, 358, 360
Kzo9I GATC 4 cut(s) 234, 318, 390, 448
LmnI GCTCC 2 cut(s) 49, 175
LweI GCATC 1 cut(s) 216
MaeII ACGT 4 cut(s) 85, 224, 279, 380
MaeIII GTNAC 1 cut(s) 227
MalI GATC 4 cut(s) 236, 320, 392, 450
MbiI CCGCTC 1 cut(s) 44
MboI GATC 4 cut(s) 234, 318, 390, 448
MboII GAAGA 6 cut(s) 6, 9, 28, 43, 328, 388
MflI RGATCY 1 cut(s) 318
MluCI AATT 1 cut(s) 436
MlyI GAGTC 2 cut(s) 273, 287
MmeI TCCRAC 4 cut(s) 159, 206, 369, 387
MroXI GAANNNNTTC 1 cut(s) 380
MspI CCGG 4 cut(s) 250, 385, 429, 433
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 2 cut(s) 128, 394
NdeII GATC 4 cut(s) 234, 318, 390, 448
NlaIII CATG 1 cut(s) 316
NmeAIII GCCGAG 2 cut(s) 183, 388
NmuCI GTSAC 1 cut(s) 227
PaeR7I CTCGAG 1 cut(s) 105
PagI TCATGA 1 cut(s) 312
PauI GCGCGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 380
PkrI GCNGC 2 cut(s) 124, 286
PleI GAGTC 2 cut(s) 272, 287
PmaCI CACGTG 2 cut(s) 86, 225
PmlI CACGTG 2 cut(s) 86, 225
PpsI GAGTC 2 cut(s) 272, 287
Ppu21I YACGTR 2 cut(s) 86, 225
Psp6I CCWGG 1 cut(s) 416
PspCI CACGTG 2 cut(s) 86, 225
PspGI CCWGG 1 cut(s) 416
PspXI VCTCGAGB 1 cut(s) 105
PsuI RGATCY 1 cut(s) 318
PteI GCGCGC 1 cut(s) 358
RsaI GTAC 2 cut(s) 368, 422
RsaNI GTAC 2 cut(s) 367, 421
SatI GCNGC 2 cut(s) 123, 285
Sau3AI GATC 4 cut(s) 234, 318, 390, 448
SchI GAGTC 2 cut(s) 273, 287
ScrFI CCNGG 1 cut(s) 418
SetI ASST 7 cut(s) 29, 88, 188, 227, 282, 383, 422
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 1 cut(s) 436
StyD4I CCNGG 1 cut(s) 416
TaiI ACGT 4 cut(s) 88, 227, 282, 383
TaqI TCGA 1 cut(s) 106
TaqII GACCGA 1 cut(s) 461
TasI AATT 1 cut(s) 436
TauI GCSGC 2 cut(s) 125, 287
TscAI CASTG 1 cut(s) 458
TseFI GTSAC 1 cut(s) 227
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 301, 329
TspRI CASTG 1 cut(s) 458
XhoI CTCGAG 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.