Rw2G009920

Chaperone protein DNAj

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0005017
Physical Location & Seq
Forward (+)
10058668 .. 10059590
923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G009920.1

Sequence Viewer

Length: 465 bp
ATGCTCTCTGCTCCTTCTTCAACCTCCACACTCTTCACCGCTCCGCTCTTCTCCGCCACTCCCTCCCCCAAATCGCCGCCACGTGTCCGCTTCCATCCCGCTCGAGCCTTCGCCTCCGCCGCCTGCGCTTCCGACGAGACCTCCACGGCGTCGTATCTCGCCCCTCCGACGACTACCGCCTCCCTCTACGAGATCCTCGGCATCCCCGCCGCCGCCACGTGTCACGAGATCAAAACGGCCTACCGGCGGCTCGCGAGGGTCTGCCACCCCGACGTGGCGGCGATGGAGCGGAAGGACTCGTCGGCCGACGAGTTCATGAGGATCCACGACGCCTACTCCACCCTCTCCGACCCCGAAAAGCGCGCCGAGTACGACCGGAAGATGTTCCGGAGGAGCAGGCCGTTGTCGGCGGATTATTCTAGATACTATTCTGGCCGGAATTGGGAGACCGATCAGTGCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

154

Amino Acids

17.2

Weight (kDa)

8.72

Isoelectric Point (pI)

58.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 62 - 125 1.1e-20 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 41, 46, 101, 289
AccII CGCG 2 cut(s) 254, 363
AccIII TCCGGA 1 cut(s) 387
AclWI GGATC 3 cut(s) 187, 316, 329
AcoI YGGCCR 2 cut(s) 303, 433
AcvI CACGTG 2 cut(s) 83, 219
AcyI GRCGYC 2 cut(s) 149, 330
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 3 cut(s) 246, 274, 442
AflIII ACRYGT 2 cut(s) 82, 218
AgsI TTSAA 1 cut(s) 21
AjiI CACGTC 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 131, 440
AlwI GGATC 3 cut(s) 187, 316, 329
Ama87I CYCGRG 1 cut(s) 102
Aor13HI TCCGGA 1 cut(s) 387
AoxI GGCC 4 cut(s) 237, 303, 398, 433
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 3 cut(s) 128, 363, 365
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 102
BamHI GGATCC 1 cut(s) 321
BauI CACGAG 1 cut(s) 224
BbrPI CACGTG 2 cut(s) 83, 219
BccI CCATC 2 cut(s) 102, 277
BceAI ACGGC 3 cut(s) 162, 252, 385
BcoDI GTCTC 2 cut(s) 131, 440
BfaI CTAG 1 cut(s) 420
BisI GCNGC 6 cut(s) 77, 120, 210, 213, 248, 279
BlsI GCNGC 6 cut(s) 78, 121, 211, 214, 249, 280
BmeT110I CYCGRG 1 cut(s) 102
BmgBI CACGTC 1 cut(s) 274
BmiI GGNNCC 1 cut(s) 323
BmsI GCATC 1 cut(s) 210
BsaAI YACGTR 2 cut(s) 83, 219
BsaHI GRCGYC 2 cut(s) 149, 330
BsaI GGTCTC 2 cut(s) 131, 440
BsaJI CCNNGG 2 cut(s) 144, 196
BsaWI WCCGGW 2 cut(s) 375, 387
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 320, 350
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 274, 442
Bse118I RCCGGY 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 144, 196
BseGI GGATG 2 cut(s) 94, 201
BseLI CCNNNNNNNGG 3 cut(s) 246, 274, 442
BsePI GCGCGC 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 406
BseX3I CGGCCG 1 cut(s) 303
Bsh1236I CGCG 2 cut(s) 254, 363
Bsh1285I CGRYCG 2 cut(s) 306, 376
BshFI GGCC 4 cut(s) 239, 305, 400, 435
BsiEI CGRYCG 2 cut(s) 306, 376
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 4 cut(s) 244, 376, 388, 436
BslI CCNNNNNNNGG 3 cut(s) 246, 274, 442
BsmAI GTCTC 2 cut(s) 131, 440
BsnI GGCC 4 cut(s) 239, 305, 400, 435
Bso31I GGTCTC 2 cut(s) 131, 440
BsoBI CYCGRG 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 387
Bsp143I GATC 4 cut(s) 192, 228, 321, 451
Bsp68I TCGCGA 1 cut(s) 254
BspANI GGCC 4 cut(s) 239, 305, 400, 435
BspEI TCCGGA 1 cut(s) 387
BspFNI CGCG 2 cut(s) 254, 363
BspHI TCATGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 323
BspPI GGATC 3 cut(s) 187, 316, 329
BspQI GCTCTTC 1 cut(s) 53
BspTNI GGTCTC 2 cut(s) 131, 440
BsrBI CCGCTC 4 cut(s) 41, 46, 101, 289
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 144, 196
BssHII GCGCGC 1 cut(s) 361
BssMI GATC 4 cut(s) 192, 228, 321, 451
BssNI GRCGYC 2 cut(s) 149, 330
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
Bst6I CTCTTC 2 cut(s) 38, 53
BstACI GRCGYC 2 cut(s) 149, 330
BstBAI YACGTR 2 cut(s) 83, 219
BstC8I GCNNGC 4 cut(s) 124, 252, 363, 398
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 94, 201
BstFNI CGCG 2 cut(s) 254, 363
BstHHI GCGC 3 cut(s) 128, 363, 365
BstKTI GATC 4 cut(s) 195, 231, 324, 454
BstMAI GTCTC 2 cut(s) 131, 440
BstMBI GATC 4 cut(s) 192, 228, 321, 451
BstMCI CGRYCG 2 cut(s) 306, 376
BstMWI GCNNNNNNNGC 2 cut(s) 119, 125
BstUI CGCG 2 cut(s) 254, 363
BstX2I RGATCY 2 cut(s) 192, 321
BstYI RGATCY 2 cut(s) 192, 321
BstZI CGGCCG 1 cut(s) 303
BsuRI GGCC 4 cut(s) 239, 305, 400, 435
BtgI CCRYGG 1 cut(s) 144
BtgZI GCGATG 1 cut(s) 296
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 94, 201
BtsIMutI CAGTG 1 cut(s) 461
BtuMI TCGCGA 1 cut(s) 254
Cac8I GCNNGC 4 cut(s) 124, 252, 363, 398
CciI TCATGA 1 cut(s) 315
CfoI GCGC 3 cut(s) 128, 363, 365
Cfr10I RCCGGY 1 cut(s) 243
CseI GACGC 2 cut(s) 138, 338
Csp6I GTAC 1 cut(s) 370
CviAII CATG 1 cut(s) 316
CviJI RGCY 6 cut(s) 107, 239, 250, 305, 400, 435
CviKI_1 RGCY 6 cut(s) 107, 239, 250, 305, 400, 435
CviQI GTAC 1 cut(s) 370
DpnI GATC 4 cut(s) 194, 230, 323, 453
DpnII GATC 4 cut(s) 192, 228, 321, 451
EaeI YGGCCR 2 cut(s) 303, 433
EagI CGGCCG 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 38, 53
EarI CTCTTC 2 cut(s) 38, 53
EciI GGCGGA 3 cut(s) 43, 106, 425
EclXI CGGCCG 1 cut(s) 303
Eco31I GGTCTC 2 cut(s) 131, 440
Eco52I CGGCCG 1 cut(s) 303
Eco72I CACGTG 2 cut(s) 83, 219
Eco88I CYCGRG 1 cut(s) 102
FaeI CATG 1 cut(s) 319
FaiI YATR 1 cut(s) 317
FatI CATG 1 cut(s) 315
FauI CCCGC 2 cut(s) 106, 214
Fnu4HI GCNGC 6 cut(s) 77, 120, 210, 213, 248, 279
FokI GGATG 2 cut(s) 81, 188
Fsp4HI GCNGC 6 cut(s) 77, 120, 210, 213, 248, 279
FspBI CTAG 1 cut(s) 420
GlaI GCGC 3 cut(s) 127, 362, 364
GluI GCNGC 6 cut(s) 77, 120, 210, 213, 248, 279
HaeIII GGCC 4 cut(s) 239, 305, 400, 435
HapII CCGG 4 cut(s) 244, 376, 388, 436
HgaI GACGC 2 cut(s) 138, 338
HhaI GCGC 3 cut(s) 128, 363, 365
Hin1I GRCGYC 2 cut(s) 149, 330
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 3 cut(s) 126, 361, 363
HinP1I GCGC 3 cut(s) 126, 361, 363
HinfI GANTC 1 cut(s) 296
HpaII CCGG 4 cut(s) 244, 376, 388, 436
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 3 cut(s) 133, 168, 349
Hpy188III TCNNGA 5 cut(s) 224, 253, 316, 388, 420
Hpy99I CGWCG 7 cut(s) 137, 154, 172, 275, 304, 311, 332
HpyAV CCTTC 3 cut(s) 24, 118, 286
HpyCH4IV ACGT 3 cut(s) 82, 218, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 125
HpySE526I ACGT 3 cut(s) 82, 218, 273
Hsp92I GRCGYC 2 cut(s) 149, 330
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 3 cut(s) 126, 361, 363
Kpn2I TCCGGA 1 cut(s) 387
Kzo9I GATC 4 cut(s) 192, 228, 321, 451
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 4 cut(s) 16, 46, 286, 393
LpnPI CCDG 8 cut(s) 136, 257, 382, 389, 401, 417, 445, 449
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 420
MaeII ACGT 3 cut(s) 82, 218, 273
MaeIII GTNAC 1 cut(s) 221
MalI GATC 4 cut(s) 194, 230, 323, 453
MbiI CCGCTC 4 cut(s) 41, 46, 101, 289
MboI GATC 4 cut(s) 192, 228, 321, 451
MboII GAAGA 4 cut(s) 9, 25, 40, 391
MflI RGATCY 2 cut(s) 192, 321
MluCI AATT 1 cut(s) 439
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 3 cut(s) 156, 191, 372
MroI TCCGGA 1 cut(s) 387
MroXI GAANNNNTTC 1 cut(s) 383
MspI CCGG 4 cut(s) 244, 376, 388, 436
MvnI CGCG 2 cut(s) 254, 363
MwoI GCNNNNNNNGC 2 cut(s) 119, 125
NdeII GATC 4 cut(s) 192, 228, 321, 451
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 1 cut(s) 323
NmeAIII GCCGAG 2 cut(s) 177, 391
NmuCI GTSAC 1 cut(s) 221
NruI TCGCGA 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 102
PagI TCATGA 1 cut(s) 315
PauI GCGCGC 1 cut(s) 361
PciSI GCTCTTC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 383
PkrI GCNGC 6 cut(s) 78, 121, 211, 214, 249, 280
PleI GAGTC 1 cut(s) 290
PmaCI CACGTG 2 cut(s) 83, 219
PmlI CACGTG 2 cut(s) 83, 219
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 2 cut(s) 83, 219
PspCI CACGTG 2 cut(s) 83, 219
PspN4I GGNNCC 1 cut(s) 323
PspXI VCTCGAGB 1 cut(s) 102
PsuI RGATCY 2 cut(s) 192, 321
PteI GCGCGC 1 cut(s) 361
RruI TCGCGA 1 cut(s) 254
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 53
SatI GCNGC 6 cut(s) 77, 120, 210, 213, 248, 279
Sau3AI GATC 4 cut(s) 192, 228, 321, 451
SchI GAGTC 1 cut(s) 290
SetI ASST 5 cut(s) 26, 85, 143, 221, 276
SfaNI GCATC 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 102
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 439
SspMI CTAG 1 cut(s) 420
TaiI ACGT 3 cut(s) 85, 221, 276
TaqI TCGA 1 cut(s) 103
TaqII GACCGA 1 cut(s) 464
TasI AATT 1 cut(s) 439
TauI GCSGC 6 cut(s) 79, 122, 212, 215, 250, 281
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 304
TspRI CASTG 1 cut(s) 461
XbaI TCTAGA 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 102
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.