AT2G17990

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006480
Physical Location & Seq
Forward (+)
7826811 .. 7828827
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17990.3

Sequence Viewer

Length: 1017 bp
ATGGCTGGTAAAGAGGAGACTGATGTATCTGCACAAGGGTCTTTAACCAGGGAGGCCACTGAGATATGGAGGAGTGAGTTGGAATCTCGCCGGTTTCAGGTAGATAGTTTAGAAGCTGAACTTGTGGATGTCAAGGCTTACCTTGAGTTTGGCTCAGAAGAAGATGCCAGAAAGGAGTTAGGAGTTCTTTCGGGTAGGGTCAGATCGACTGCAACTATGTTGCGTTATTTGAGATCAAAAGCTAGAGTCTTGGCCATTCCTGATGATCTAGCAAATGTGTCATGCGGTGTGGAACAGATTGAAGAACTGAAAGGATTGAACCTTGTTGAGAAAGATGGTGGTTCATCTTCTTCTGACGGGGCTAGGAACACTAATCCTGAAACTAGAAGGTACAGTGGTTCCTTGGGTGTAGAGGATGGAGCCTATACTAATGAGATGCTCCAGTCCATAGAGATGGTTACTGATGTGCTGGACTCTCTTGTGAGGAGGGTTACAGTAGCAGAATCTGAGTCTGCTGTTCAAAAGGAGAGGGCACTTTTGGGAGAGGAAGAAATCAGTAGGAAGACTATCCAAATCGAAAATTTGTCCGTGAAGTTAGAAGAGATGGAACGATTTGCTTATGGGACTAATAGTGTTCTAAACGAAATGCGGGAAAGGATTGAGGAATTAGTTGAAGAGACGATGAGGCAGAGGGAAAAAGCTGTGGAAAACGAAGAGGAGTTGTGTCGTGTGAAGAGAGAGTTCGAGTCGCTTAAAAGCTACGTCAGTACTTTTACCAATGTTCGAGAAACACTTCTTTCGTCCGAGAGACAATTCAAAACCATTGAGGAGCTCTTTGAACGGTTGGTCACTAAGACGACACAATTAGAAGGGGAGAAGGCACAAAAGGAGGTTGAAGTACAGAAACTGATGGAGGAGAATGTGAAATTGACAGCACTTCTCGACAAGAAAGAGGCTCAGCTTCTAGCTTTGAATGAACAATGCAAAGTTATGGCTTTGAGTGCATCAAACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

338

Amino Acids

38.27

Weight (kDa)

4.77

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 285, 649
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 580
AfaI GTAC 3 cut(s) 392, 769, 900
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 8 cut(s) 302, 319, 521, 674, 817, 839, 896, 973
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 7 cut(s) 116, 242, 701, 759, 832, 961, 968
AluI AGCT 7 cut(s) 116, 242, 701, 759, 832, 961, 968
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 3 cut(s) 11, 671, 802
AlwNI CAGNNNCTG 2 cut(s) 506, 907
AoxI GGCC 2 cut(s) 54, 252
ApoI RAATTY 1 cut(s) 580
Asp700I GAANNNNTTC 1 cut(s) 792
BaeGI GKGCMC 1 cut(s) 535
BaeI ACNNNNGTAYC 4 cut(s) 9, 42, 382, 415
BalI TGGCCA 1 cut(s) 254
BanII GRGCYC 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 569
Bbv12I GWGCWC 1 cut(s) 834
BccI CCATC 5 cut(s) 329, 410, 448, 598, 904
BciT130I CCWGG 1 cut(s) 49
BcoDI GTCTC 3 cut(s) 11, 671, 802
BfaI CTAG 5 cut(s) 243, 269, 363, 384, 965
BlpI GCTNAGC 1 cut(s) 957
BmcAI AGTACT 1 cut(s) 769
Bme1390I CCNGG 1 cut(s) 49
BmiI GGNNCC 2 cut(s) 400, 421
BmrFI CCNGG 1 cut(s) 49
BmsI GCATC 3 cut(s) 154, 426, 1013
BpiI GAAGAC 1 cut(s) 569
BplI GAGNNNNNCTC 2 cut(s) 137, 169
BpmI CTGGAG 1 cut(s) 425
Bpu1102I GCTNAGC 1 cut(s) 957
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 48, 402
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse118I RCCGGY 1 cut(s) 90
Bse1I ACTGG 1 cut(s) 442
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 2 cut(s) 48, 402
BseGI GGATG 2 cut(s) 133, 421
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 4 cut(s) 51, 168, 498, 971
BseNI ACTGG 1 cut(s) 442
BseRI GAGGAG 6 cut(s) 29, 85, 499, 731, 842, 929
BseSI GKGCMC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 15
BshFI GGCC 2 cut(s) 56, 254
BsiHKAI GWGCWC 1 cut(s) 834
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 637
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 3 cut(s) 11, 671, 802
BsmBI CGTCTC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 637
BsnI GGCC 2 cut(s) 56, 254
Bsp1286I GDGCHC 2 cut(s) 535, 834
Bsp143I GATC 3 cut(s) 203, 233, 265
Bsp1720I GCTNAGC 1 cut(s) 957
BspACI CCGC 2 cut(s) 285, 649
BspANI GGCC 2 cut(s) 56, 254
BspCNI CTCAG 4 cut(s) 52, 167, 499, 970
BspLI GGNNCC 2 cut(s) 400, 421
BsrFI RCCGGY 1 cut(s) 90
BsrI ACTGG 1 cut(s) 442
BssAI RCCGGY 1 cut(s) 90
BssECI CCNNGG 2 cut(s) 48, 402
BssMI GATC 3 cut(s) 203, 233, 265
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 395, 496, 843
Bst6I CTCTTC 4 cut(s) 594, 669, 708, 728
BstDEI CTNAG 5 cut(s) 60, 154, 507, 852, 957
BstF5I GGATG 2 cut(s) 133, 421
BstKTI GATC 3 cut(s) 206, 236, 268
BstMAI GTCTC 3 cut(s) 11, 671, 802
BstMBI GATC 3 cut(s) 203, 233, 265
BstMWI GCNNNNNNNGC 1 cut(s) 1001
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BstSLI GKGCMC 1 cut(s) 535
BstV2I GAAGAC 1 cut(s) 569
BstXI CCANNNNNNTGG 1 cut(s) 454
BsuRI GGCC 2 cut(s) 56, 254
BtsCI GGATG 2 cut(s) 133, 421
BtsIMutI CAGTG 2 cut(s) 57, 400
CaiI CAGNNNCTG 2 cut(s) 506, 907
Cfr10I RCCGGY 1 cut(s) 90
Csp6I GTAC 3 cut(s) 391, 768, 899
CviAII CATG 1 cut(s) 282
CviQI GTAC 3 cut(s) 391, 768, 899
DdeI CTNAG 5 cut(s) 60, 154, 507, 852, 957
DpnI GATC 3 cut(s) 205, 235, 267
DpnII GATC 3 cut(s) 203, 233, 265
EaeI YGGCCR 1 cut(s) 252
Eam1104I CTCTTC 4 cut(s) 594, 669, 708, 728
EarI CTCTTC 4 cut(s) 594, 669, 708, 728
Ecl136II GAGCTC 1 cut(s) 832
Eco130I CCWWGG 1 cut(s) 402
Eco24I GRGCYC 1 cut(s) 834
Eco53kI GAGCTC 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 832
EcoRII CCWGG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 834
ErhI CCWWGG 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 1 cut(s) 285
FaiI YATR 9 cut(s) 67, 218, 283, 426, 449, 621, 992, 1013, 1015
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FaqI GGGAC 1 cut(s) 637
FatI CATG 1 cut(s) 281
FauI CCCGC 1 cut(s) 642
FauNDI CATATG 1 cut(s) 1013
FokI GGATG 2 cut(s) 140, 428
FriOI GRGCYC 1 cut(s) 834
FspBI CTAG 5 cut(s) 243, 269, 363, 384, 965
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 2 cut(s) 56, 254
HapII CCGG 1 cut(s) 91
Hin1II CATG 1 cut(s) 285
HinfI GANTC 6 cut(s) 83, 246, 473, 503, 509, 746
HpaII CCGG 1 cut(s) 91
Hpy188I TCNGA 5 cut(s) 157, 203, 355, 508, 805
Hpy188III TCNNGA 4 cut(s) 260, 377, 785, 941
HpyAV CCTTC 3 cut(s) 381, 863, 871
HpyCH4III ACNGT 3 cut(s) 395, 496, 843
HpyCH4IV ACGT 1 cut(s) 762
HpyCH4V TGCA 4 cut(s) 32, 212, 984, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 1001
HpyF3I CTNAG 5 cut(s) 60, 154, 507, 852, 957
HpySE526I ACGT 1 cut(s) 762
Hsp92II CATG 1 cut(s) 285
Kzo9I GATC 3 cut(s) 203, 233, 265
LmnI GCTCC 3 cut(s) 419, 444, 829
LpnPI CCDG 9 cut(s) 34, 61, 83, 104, 181, 273, 390, 455, 455
LweI GCATC 3 cut(s) 154, 426, 1013
MaeI CTAG 5 cut(s) 243, 269, 363, 384, 965
MaeII ACGT 1 cut(s) 762
MaeIII GTNAC 3 cut(s) 457, 490, 847
MalI GATC 3 cut(s) 205, 235, 267
MboI GATC 3 cut(s) 203, 233, 265
MhlI GDGCHC 2 cut(s) 535, 834
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 5 cut(s) 580, 665, 812, 863, 926
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 4 cut(s) 255, 467, 518, 755
MmeI TCCRAC 1 cut(s) 60
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 792
MscI TGGCCA 1 cut(s) 254
MseI TTAA 2 cut(s) 44, 753
MslI CAYNNNNRTG 1 cut(s) 452
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 1001
NdeI CATATG 1 cut(s) 1013
NdeII GATC 3 cut(s) 203, 233, 265
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 2 cut(s) 400, 421
NmuCI GTSAC 1 cut(s) 847
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 83, 503
PleI GAGTC 4 cut(s) 254, 467, 517, 754
PpsI GAGTC 4 cut(s) 254, 467, 517, 754
Psp124BI GAGCTC 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 400, 421
PstNI CAGNNNCTG 2 cut(s) 506, 907
RsaI GTAC 3 cut(s) 392, 769, 900
RsaNI GTAC 3 cut(s) 391, 768, 899
RseI CAYNNNNRTG 1 cut(s) 452
SacI GAGCTC 1 cut(s) 834
SaqAI TTAA 2 cut(s) 44, 753
Sau3AI GATC 3 cut(s) 203, 233, 265
ScaI AGTACT 1 cut(s) 769
SchI GAGTC 4 cut(s) 255, 467, 518, 755
ScrFI CCNGG 1 cut(s) 49
SduI GDGCHC 2 cut(s) 535, 834
SfaNI GCATC 3 cut(s) 154, 426, 1013
SmiMI CAYNNNNRTG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
Sse9I AATT 5 cut(s) 580, 665, 812, 863, 926
SsiI CCGC 2 cut(s) 285, 649
SspMI CTAG 5 cut(s) 243, 269, 363, 384, 965
SstI GAGCTC 1 cut(s) 834
StyD4I CCNGG 1 cut(s) 47
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 3 cut(s) 395, 496, 843
TaiI ACGT 1 cut(s) 765
TaqI TCGA 5 cut(s) 206, 576, 744, 784, 942
TasI AATT 5 cut(s) 580, 665, 812, 863, 926
TatI WGTACW 2 cut(s) 767, 898
TfiI GAWTC 2 cut(s) 83, 503
Tru1I TTAA 2 cut(s) 44, 753
Tru9I TTAA 2 cut(s) 44, 753
TscAI CASTG 2 cut(s) 64, 400
TseFI GTSAC 1 cut(s) 847
Tsp45I GTSAC 1 cut(s) 847
TspDTI ATGAA 2 cut(s) 333, 990
TspGWI ACGGA 1 cut(s) 577
TspRI CASTG 2 cut(s) 64, 400
XapI RAATTY 1 cut(s) 580
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 5 cut(s) 243, 269, 363, 384, 965
ZrmI AGTACT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.