Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Forward (+)

7295452 .. 7295880

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCAGCAGAGGAAGATGTTGACTTGTCAACCTTGAAGTCTCAGCTGGGTCAAACACTTGAACCTTGGAAGCAGGAGATAGAACAGCGCCAATCCCAAGTGGATGTTTTACAAACAAAGCTTATGGAGGTACAGCTTTGCATAGAGGGGTCCGAGGAAGATTCAAAAAAGGAATTAGAGGTTCTTTGGCGTAGAGTTAAAACTACTGCAACTGTGTTAACATACTTGAAATCAAAAGCAAGAGTAATGGCTGTTCCGCATTTAGCACATACATCATGCGGCATCAAACAATTAGAAGGGGTGGGCCTTGTTGATAAAAATGGTACACCGTTGTCTGGTTGGTCTAGGAATGTTGATCTCACTTCCTTTGATAGTCTAGATGAAGAGACTTGGGTTGGGATTAGCAACCATCATCGATCCTCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.89

Weight (kDa)

5.21

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	257, 279
AclWI	GGATC	1 cut(s)	411
AfaI	GTAC	2 cut(s)	132, 325
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	37, 62, 165, 229
AluBI	AGCT	3 cut(s)	46, 121, 136
AluI	AGCT	3 cut(s)	46, 121, 136
Alw26I	GTCTC	2 cut(s)	45, 380
AlwI	GGATC	1 cut(s)	411
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	2 cut(s)	150, 304
AvaII	GGWCC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	45, 380
BfaI	CTAG	2 cut(s)	345, 377
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	2 cut(s)	6, 280
BlsI	GCNGC	2 cut(s)	7, 281
Bme18I	GGWCC	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	150, 304
BmiI	GGNNCC	1 cut(s)	151
BmsI	GCATC	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	415
BsaJI	CCNNGG	2 cut(s)	65, 153
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	65, 153
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	56
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	46
BshFI	GGCC	1 cut(s)	306
BshVI	ATCGAT	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	2 cut(s)	45, 380
BsnI	GGCC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	355, 416
BspACI	CCGC	2 cut(s)	257, 279
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	415
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	411
BssECI	CCNNGG	2 cut(s)	65, 153
BssMI	GATC	2 cut(s)	355, 416
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	214, 330
Bst6I	CTCTTC	1 cut(s)	378
BstDEI	CTNAG	1 cut(s)	42
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	358, 419
BstMAI	GTCTC	2 cut(s)	45, 380
BstMBI	GATC	2 cut(s)	355, 416
BstV1I	GCAGC	1 cut(s)	17
Bsu15I	ATCGAT	1 cut(s)	415
BsuRI	GGCC	1 cut(s)	306
BsuTUI	ATCGAT	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	109
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	150, 304
ClaI	ATCGAT	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	131, 324
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	5 cut(s)	46, 121, 136, 251, 306
CviKI_1	RGCY	5 cut(s)	46, 121, 136, 251, 306
CviQI	GTAC	2 cut(s)	131, 324
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	2 cut(s)	357, 418
DpnII	GATC	2 cut(s)	355, 416
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	279
FaiI	YATR	5 cut(s)	125, 143, 223, 270, 277
FatI	CATG	1 cut(s)	275
Fnu4HI	GCNGC	2 cut(s)	6, 280
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	6, 280
FspBI	CTAG	2 cut(s)	345, 377
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	6, 280
GsaI	CCCAGC	1 cut(s)	50
HaeII	RGCGCY	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	306
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	3 cut(s)	22, 30, 219
HindII	GTYRAC	3 cut(s)	22, 30, 219
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	1 cut(s)	161
HpaI	GTTAAC	1 cut(s)	219
Hpy166II	GTNNAC	4 cut(s)	22, 30, 219, 326
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	377, 423
Hpy8I	GTNNAC	4 cut(s)	22, 30, 219, 326
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	214, 330
HpyCH4V	TGCA	2 cut(s)	141, 209
HpyF3I	CTNAG	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	2 cut(s)	355, 416
LpnPI	CCDG	4 cut(s)	32, 59, 321, 408
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	2 cut(s)	345, 377
MalI	GATC	2 cut(s)	357, 418
MboI	GATC	2 cut(s)	355, 416
MboII	GAAGA	3 cut(s)	26, 170, 395
MluCI	AATT	2 cut(s)	173, 290
MnlI	CCTC	5 cut(s)	4, 121, 139, 148, 172
MseI	TTAA	2 cut(s)	198, 218
MspA1I	CMGCKG	1 cut(s)	46
NdeII	GATC	2 cut(s)	355, 416
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	7, 281
PspFI	CCCAGC	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	2 cut(s)	150, 304
PsrI	GAACNNNNNNTAC	2 cut(s)	237, 269
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	2 cut(s)	132, 325
RsaNI	GTAC	2 cut(s)	131, 324
SaqAI	TTAA	2 cut(s)	198, 218
SatI	GCNGC	2 cut(s)	6, 280
Sau3AI	GATC	2 cut(s)	355, 416
Sau96I	GGNCC	2 cut(s)	150, 304
SetI	ASST	7 cut(s)	35, 48, 67, 123, 132, 138, 183
SfaNI	GCATC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	150
Sse9I	AATT	2 cut(s)	173, 290
SsiI	CCGC	2 cut(s)	257, 279
SspMI	CTAG	2 cut(s)	345, 377
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	214, 330
TaqI	TCGA	1 cut(s)	415
TasI	AATT	2 cut(s)	173, 290
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	2 cut(s)	198, 218
Tru9I	TTAA	2 cut(s)	198, 218
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	150
XbaI	TCTAGA	1 cut(s)	376
XspI	CTAG	2 cut(s)	345, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.