Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Forward (+)

10784124 .. 10787536

Gene Structure 3413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1133400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGGATGGCAGCAGAGGAAGATGTTGACTTGTCAACCTTGAAGTCTCAGCTGGGTCAAACACGTGAACCGTGGAAGCAGGAGATAGAACAGCGCCAATCCCAAGTGGATGTTTTACAAACAAAGCTTATGGAGGTAAAGCTTTGCATAGAGGGGTCCGAGGAAGATTCAAAAAAAGAATTAGAGGTTCTTTGGCGGAGAGTTAAAACTACTGCAACTGTGTTAACATACTTGAAATCAAAAGCAAGAGTAATGGCTGTTCCGCATTTAGCACATACATCATGCGGCATCAAACAATTAGAAGGGGTGGGCCTTGTTGATAAAAATGGTACACCGTTGTCTGGTTGGTCTAGGAATGTTGATCTCACTTCCTTTGATAGTCTAGATGAAGAGATTTGGGTTGGGATTAGCAACCAACATGATCCTCTGGATGAACAAGATGCGGCTTATATTGGTGAACTTCTTAAATCTGTTCAGATGGTTACGGATGTAATGGAAGCTCTTGTCAAGAGAGTTTTACTGGCAGAATCTGAAACTGCAATTGAGAAGGAGAAGGTGACTTTTGGTCAGGAAGAAATTAAAAAAAAGTCAGTTCAAATTGAGAACATGACTGTGAAGTTAGAGGAGATGGAACGCTTCGCTCTAGGAACAAATGGTATTTTAAATGAAATGCGGCAGAGAGTTGAGGATTTGGTTGAAGAAACTACTAGACAGCGGCTACGAGCTGCAGAAAACGAACAGGAGCTTTGTCGTGTGAAGCGGGACTTTGAGTCTCTCAAATCATATGTCAGCAGTCTTATCACTGTGCGAGAAACTCTGCTTTCATCAGAGAAGCAGTTTCAAACTATAGAGAGACTGTTTGAGCGGCTAGTTGCAAAAACAACACAGTTAGAGGGTGAGAAAATCCAGAAAGAGACCGAAGTTCAGAAACTTATGGAAGAAAATGTGAAGCTGAGCGCTCTTCTTGACAAGAAAGAGGCCCAACTTCTGGCCATGAATGAACAATGCAAGGTCATGGCTTTGAGTGCTTCAAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

347

Amino Acids

39.41

Weight (kDa)

5.03

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	988
AccBSI	CCGCTC	1 cut(s)	865
AciI	CCGC	8 cut(s)	196, 263, 285, 443, 673, 715, 760, 865
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	990
AcvI	CACGTG	1 cut(s)	65
AfaI	GTAC	1 cut(s)	331
AfeI	AGCGCT	1 cut(s)	958
AfiI	CCNNNNNNNGG	2 cut(s)	341, 988
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	7 cut(s)	43, 171, 235, 596, 698, 842, 1032
AhdI	GACNNNNNGTC	2 cut(s)	564, 769
AluBI	AGCT	7 cut(s)	52, 127, 142, 500, 725, 745, 952
AluI	AGCT	7 cut(s)	52, 127, 142, 500, 725, 745, 952
Alw26I	GTCTC	4 cut(s)	51, 777, 847, 908
AlwI	GGATC	1 cut(s)	416
AlwNI	CAGNNNCTG	1 cut(s)	530
Aor51HI	AGCGCT	1 cut(s)	958
AoxI	GGCC	3 cut(s)	310, 978, 990
ApeKI	GCWGC	2 cut(s)	11, 725
ArsI	GACNNNNNNTTYG	2 cut(s)	771, 803
AspLEI	GCGC	2 cut(s)	96, 959
AspS9I	GGNCC	3 cut(s)	156, 310, 979
AsuHPI	GGTGA	3 cut(s)	467, 568, 908
AvaII	GGWCC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	992
BbrPI	CACGTG	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	23, 712
BccI	CCATC	2 cut(s)	472, 622
BcoDI	GTCTC	4 cut(s)	51, 777, 847, 908
BfaI	CTAG	5 cut(s)	351, 383, 644, 708, 869
BfmI	CTRYAG	2 cut(s)	726, 846
BfoI	RGCGCY	2 cut(s)	97, 960
BisI	GCNGC	7 cut(s)	12, 286, 444, 674, 716, 726, 866
BlpI	GCTNAGC	1 cut(s)	953
BlsI	GCNGC	7 cut(s)	13, 287, 445, 675, 717, 727, 867
Bme18I	GGWCC	1 cut(s)	156
BmeRI	GACNNNNNGTC	2 cut(s)	564, 769
BmgT120I	GGNCC	3 cut(s)	156, 310, 979
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	2 cut(s)	297, 430
Bpu1102I	GCTNAGC	1 cut(s)	953
BsaAI	YACGTR	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	908
BsaJI	CCNNGG	2 cut(s)	71, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	341, 988
Bse1I	ACTGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	71, 159
BseGI	GGATG	4 cut(s)	12, 115, 436, 493
BseLI	CCNNNNNNNGG	2 cut(s)	341, 988
BseMII	CTCAG	2 cut(s)	62, 944
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	1 cut(s)	638
BseXI	GCAGC	2 cut(s)	23, 712
BseYI	CCCAGC	1 cut(s)	52
BshFI	GGCC	3 cut(s)	312, 980, 992
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	341, 988
BsmAI	GTCTC	4 cut(s)	51, 777, 847, 908
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	3 cut(s)	312, 980, 992
Bso31I	GGTCTC	1 cut(s)	908
Bsp143I	GATC	2 cut(s)	361, 421
Bsp1720I	GCTNAGC	1 cut(s)	953
BspACI	CCGC	8 cut(s)	196, 263, 285, 443, 673, 715, 760, 865
BspANI	GGCC	3 cut(s)	312, 980, 992
BspCNI	CTCAG	2 cut(s)	61, 945
BspLI	GGNNCC	1 cut(s)	157
BspMAI	CTGCAG	1 cut(s)	730
BspPI	GGATC	1 cut(s)	416
BspQI	GCTCTTC	1 cut(s)	966
BspTNI	GGTCTC	1 cut(s)	908
BsrBI	CCGCTC	1 cut(s)	865
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	2 cut(s)	71, 159
BssMI	GATC	2 cut(s)	361, 421
Bst4CI	ACNGT	7 cut(s)	72, 220, 336, 613, 805, 858, 888
Bst6I	CTCTTC	2 cut(s)	384, 966
BstBAI	YACGTR	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	48, 953
BstDSI	CCRYGG	1 cut(s)	71
BstF5I	GGATG	4 cut(s)	12, 115, 436, 493
BstH2I	RGCGCY	2 cut(s)	97, 960
BstHHI	GCGC	2 cut(s)	96, 959
BstKTI	GATC	2 cut(s)	364, 424
BstMAI	GTCTC	4 cut(s)	51, 777, 847, 908
BstMBI	GATC	2 cut(s)	361, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	1025
BstSFI	CTRYAG	2 cut(s)	726, 846
BstV1I	GCAGC	2 cut(s)	23, 712
BsuRI	GGCC	3 cut(s)	312, 980, 992
BtgI	CCRYGG	1 cut(s)	71
BtsCI	GGATG	4 cut(s)	12, 115, 436, 493
BtsIMutI	CAGTG	1 cut(s)	801
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	2 cut(s)	96, 959
Cfr13I	GGNCC	3 cut(s)	156, 310, 979
Csp6I	GTAC	1 cut(s)	330
CviAII	CATG	5 cut(s)	282, 419, 607, 994, 1015
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	2 cut(s)	48, 953
DpnI	GATC	2 cut(s)	363, 423
DpnII	GATC	2 cut(s)	361, 421
DraI	TTTAAA	1 cut(s)	663
DriI	GACNNNNNGTC	2 cut(s)	564, 769
EaeI	YGGCCR	1 cut(s)	990
Eam1104I	CTCTTC	2 cut(s)	384, 966
Eam1105I	GACNNNNNGTC	2 cut(s)	564, 769
EarI	CTCTTC	2 cut(s)	384, 966
EciI	GGCGGA	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	908
Eco47I	GGWCC	1 cut(s)	156
Eco47III	AGCGCT	1 cut(s)	958
Eco72I	CACGTG	1 cut(s)	65
FaeI	CATG	5 cut(s)	285, 422, 610, 997, 1018
FalI	AAGNNNNNCTT	2 cut(s)	749, 781
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	5 cut(s)	281, 418, 606, 993, 1014
FauI	CCCGC	1 cut(s)	753
FauNDI	CATATG	1 cut(s)	784
Fnu4HI	GCNGC	7 cut(s)	12, 286, 444, 674, 716, 726, 866
FokI	GGATG	4 cut(s)	19, 122, 443, 500
Fsp4HI	GCNGC	7 cut(s)	12, 286, 444, 674, 716, 726, 866
FspBI	CTAG	5 cut(s)	351, 383, 644, 708, 869
GlaI	GCGC	2 cut(s)	95, 958
GluI	GCNGC	7 cut(s)	12, 286, 444, 674, 716, 726, 866
GsaI	CCCAGC	1 cut(s)	56
HaeII	RGCGCY	2 cut(s)	97, 960
HaeIII	GGCC	3 cut(s)	312, 980, 992
HhaI	GCGC	2 cut(s)	96, 959
Hin1II	CATG	5 cut(s)	285, 422, 610, 997, 1018
Hin6I	GCGC	2 cut(s)	94, 957
HinP1I	GCGC	2 cut(s)	94, 957
HincII	GTYRAC	3 cut(s)	28, 36, 225
HindII	GTYRAC	3 cut(s)	28, 36, 225
HindIII	AAGCTT	2 cut(s)	125, 140
HinfI	GANTC	3 cut(s)	167, 527, 770
HpaI	GTTAAC	1 cut(s)	225
HphI	GGTGA	3 cut(s)	467, 568, 908
Hpy166II	GTNNAC	6 cut(s)	28, 36, 68, 225, 332, 458
Hpy188I	TCNGA	5 cut(s)	160, 477, 532, 829, 927
Hpy188III	TCNNGA	6 cut(s)	383, 428, 508, 569, 907, 965
Hpy8I	GTNNAC	6 cut(s)	28, 36, 68, 225, 332, 458
HpyAV	CCTTC	3 cut(s)	296, 541, 547
HpyCH4III	ACNGT	7 cut(s)	72, 220, 336, 613, 805, 858, 888
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	6 cut(s)	147, 215, 539, 728, 875, 1008
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1025
HpyF3I	CTNAG	2 cut(s)	48, 953
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	285, 422, 610, 997, 1018
HspAI	GCGC	2 cut(s)	94, 957
KspAI	GTTAAC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	361, 421
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	1 cut(s)	742
LpnPI	CCDG	9 cut(s)	38, 65, 327, 413, 506, 554, 725, 920, 974
Lsp1109I	GCAGC	2 cut(s)	23, 712
LweI	GCATC	2 cut(s)	297, 430
MaeI	CTAG	5 cut(s)	351, 383, 644, 708, 869
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	2 cut(s)	481, 556
MalI	GATC	2 cut(s)	363, 423
MbiI	CCGCTC	1 cut(s)	865
MboI	GATC	2 cut(s)	361, 421
MboII	GAAGA	7 cut(s)	32, 176, 401, 584, 710, 950, 953
MfeI	CAATTG	1 cut(s)	540
MlsI	TGGCCA	1 cut(s)	992
MluCI	AATT	5 cut(s)	179, 296, 540, 576, 597
MluNI	TGGCCA	1 cut(s)	992
MlyI	GAGTC	1 cut(s)	779
Mox20I	TGGCCA	1 cut(s)	992
MscI	TGGCCA	1 cut(s)	992
MseI	TTAA	5 cut(s)	204, 224, 465, 579, 662
MslI	CAYNNNNRTG	1 cut(s)	611
Msp20I	TGGCCA	1 cut(s)	992
MspA1I	CMGCKG	2 cut(s)	52, 715
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	1025
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	2 cut(s)	361, 421
NlaIII	CATG	5 cut(s)	285, 422, 610, 997, 1018
NlaIV	GGNNCC	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	966
PfeI	GAWTC	2 cut(s)	167, 527
PflMI	CCANNNNNTGG	1 cut(s)	988
PkrI	GCNGC	7 cut(s)	13, 287, 445, 675, 717, 727, 867
PleI	GAGTC	1 cut(s)	778
PmaCI	CACGTG	1 cut(s)	65
PmlI	CACGTG	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	778
Ppu21I	YACGTR	1 cut(s)	65
PspCI	CACGTG	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	3 cut(s)	156, 310, 979
PsrI	GAACNNNNNNTAC	2 cut(s)	243, 275
PstI	CTGCAG	1 cut(s)	730
PstNI	CAGNNNCTG	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
RseI	CAYNNNNRTG	1 cut(s)	611
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	5 cut(s)	204, 224, 465, 579, 662
SatI	GCNGC	7 cut(s)	12, 286, 444, 674, 716, 726, 866
Sau3AI	GATC	2 cut(s)	361, 421
Sau96I	GGNCC	3 cut(s)	156, 310, 979
SchI	GAGTC	1 cut(s)	779
SfaNI	GCATC	2 cut(s)	297, 430
SfcI	CTRYAG	2 cut(s)	726, 846
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	611
Sse9I	AATT	5 cut(s)	179, 296, 540, 576, 597
SsiI	CCGC	8 cut(s)	196, 263, 285, 443, 673, 715, 760, 865
SspMI	CTAG	5 cut(s)	351, 383, 644, 708, 869
TaaI	ACNGT	7 cut(s)	72, 220, 336, 613, 805, 858, 888
TaiI	ACGT	1 cut(s)	67
TaqII	GACCGA	1 cut(s)	932
TasI	AATT	5 cut(s)	179, 296, 540, 576, 597
TauI	GCSGC	5 cut(s)	288, 446, 676, 718, 868
TfiI	GAWTC	2 cut(s)	167, 527
Tru1I	TTAA	5 cut(s)	204, 224, 465, 579, 662
Tru9I	TTAA	5 cut(s)	204, 224, 465, 579, 662
TscAI	CASTG	1 cut(s)	808
TseFI	GTSAC	1 cut(s)	556
TseI	GCWGC	2 cut(s)	11, 725
Tsp45I	GTSAC	1 cut(s)	556
TspDTI	ATGAA	6 cut(s)	402, 447, 681, 813, 1010, 1014
TspGWI	ACGGA	1 cut(s)	500
TspRI	CASTG	1 cut(s)	808
Van91I	CCANNNNNTGG	1 cut(s)	988
VpaK11BI	GGWCC	1 cut(s)	156
XbaI	TCTAGA	1 cut(s)	382
XspI	CTAG	5 cut(s)	351, 383, 644, 708, 869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.