Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Reverse (-)

6512130 .. 6513377

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAATATACGAAAACTTGTTTTTCGGATTCCAACGAGGTTGTTAGCAGTAGCATAAGTATAGCTCACCACCACTCTCCCTCTTCTTCTTCACCTCCTCCTGATATCACATCCCTCAAGCACCTCTCCGATAACCTCGAACTGATAGTTGACTCCTCGTACTTTGCCGACGCCAAAATCGTCGTCAGCAACGGCCGGGAAGTCCCCGTCCACCGCTGCATCCTCGCCGCGAGGAGCTCGTTTTTCAAGAACGTCTTCTCAGCTAAAGAAGGCAGTAGCTCTATTAGGTTTGAATTGAAGAAGTTGGCGAAGGAATACGACGTTGGATTGGACTCACTGTTGGCTGTTTTGGGTTACTTGTACAGCGGCAAGCTCAAGTCTTTCACTAAAGGCGTTTGTGTTTGTGTAGACGACTCTTGTGCTCATGTTGCTTGTCGTCCCGTCGTTGATTTCATGGTGGAGGTTCTCTATGCTTCTTCAACATTTCAAATCTCAGAACTGGTCACTCTTTACCAGAGGCATTTGCTTGATATTCTTGAAAAAATAGCCATAGATGATGTGTTGGTGGTTCTGAGTGTTGCGAATATGTGTGGTAAAACTTGTGAGAGATTGGTGGAGAGATGTATTGAGATGATAGTGAAGTCTGATGTTGATATTGTCACTCTTGAGAAAGCATTGCCTCAAGGATCCGTGAAGCGAATCACGGATTCGAGGTTGGCTCTTGGCCTGGACAGTTCTCGGAGCAGTAATGCTGCGAGTAACTTTCCGGATAAGCACACAAAGAGGATACACAGGGCTTTGGATTCTGATGATGTTGAGTTGGTTCGAATGCTGTTGAAAGAGGGGCATACGAATCTTGACGATGCACATGCACTTCACTATGCTGTGGCATACTGTGATGCAAAGACCACAGCAGAGCTGCTTGATCTTGGAATTGCGGATGTGAATTGCAGGAACCTGAGGGGTTACACTGTGCTGCACCTTGCGGCGACCAGGAAGGAGCCTAAGATCATTGTGTCACTACTTACCAAAGGTGCTCGTCCCTCGGATCTTACATTGGATGGGAGGAAAGCTCTTCAGATCACTAAGCGTCTTACCAGAGCTGCGGATTTTTTCAACTCGAGTGAGAGGGGAAGTCTTCTTCCAATGACCACTTGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

42.56

Weight (kDa)

6.88

Isoelectric Point (pI)

33.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	53 - 173	2.2e-11	BTB/POZ domain
DUF3420	PF11900	216 - 264	7.3e-07	Domain of unknown function (DUF3420)
Ank_2	PF12796	263 - 348	2.2e-08	Ankyrin repeats (3 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	766
AciI	CCGC	6 cut(s)	214, 228, 366, 938, 986, 1106
AclWI	GGATC	3 cut(s)	681, 694, 1056
AcoI	YGGCCR	1 cut(s)	193
AcuI	CTGAAG	1 cut(s)	1061
AcyI	GRCGYC	1 cut(s)	171
AfaI	GTAC	2 cut(s)	161, 362
AgsI	TTSAA	8 cut(s)	247, 293, 298, 480, 488, 539, 838, 1117
AjnI	CCWGG	2 cut(s)	726, 992
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	8 cut(s)	65, 237, 263, 279, 373, 919, 1073, 1103
AluI	AGCT	8 cut(s)	65, 237, 263, 279, 373, 919, 1073, 1103
Alw21I	GWGCWC	3 cut(s)	239, 424, 1039
AlwI	GGATC	3 cut(s)	681, 694, 1056
Ama87I	CYCGRG	1 cut(s)	1120
Aor13HI	TCCGGA	1 cut(s)	766
AoxI	GGCC	2 cut(s)	193, 724
ApeKI	GCWGC	5 cut(s)	216, 752, 919, 976, 1103
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	59, 84
AsuII	TTCGAA	1 cut(s)	826
AvaI	CYCGRG	1 cut(s)	1120
AxyI	CCTNAGG	1 cut(s)	959
BamHI	GGATCC	1 cut(s)	686
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	247, 1130
Bbv12I	GWGCWC	3 cut(s)	239, 424, 1039
BbvI	GCAGC	5 cut(s)	203, 739, 906, 963, 1090
BccI	CCATC	1 cut(s)	1055
BceAI	ACGGC	1 cut(s)	208
BcgI	CGANNNNNNTGC	4 cut(s)	401, 435, 851, 885
BciT130I	CCWGG	2 cut(s)	728, 994
BciVI	GTATCC	1 cut(s)	780
BcnI	CCSGG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	780
BisI	GCNGC	8 cut(s)	217, 228, 367, 753, 920, 977, 987, 1104
BlsI	GCNGC	8 cut(s)	218, 229, 368, 754, 921, 978, 988, 1105
Bme1390I	CCNGG	3 cut(s)	197, 728, 994
BmeT110I	CYCGRG	1 cut(s)	1120
BmiI	GGNNCC	3 cut(s)	688, 956, 1002
BmrFI	CCNGG	3 cut(s)	197, 728, 994
BmsI	GCATC	3 cut(s)	228, 853, 889
BpiI	GAAGAC	2 cut(s)	247, 1130
BplI	GAGNNNNNCTC	4 cut(s)	703, 735, 1057, 1089
Bpu14I	TTCGAA	1 cut(s)	826
BpuEI	CTTGAG	4 cut(s)	101, 359, 666, 686
BpuMI	CCSGG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	1044
BsaWI	WCCGGW	1 cut(s)	766
Bse1I	ACTGG	1 cut(s)	504
Bse21I	CCTNAGG	1 cut(s)	959
Bse3DI	GCAATG	1 cut(s)	674
BseAI	TCCGGA	1 cut(s)	766
BseBI	CCWGG	2 cut(s)	728, 994
BseDI	CCNNGG	1 cut(s)	1044
BseGI	GGATG	4 cut(s)	110, 219, 946, 1066
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	4 cut(s)	273, 507, 563, 950
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	3 cut(s)	87, 145, 247
BseX3I	CGGCCG	1 cut(s)	193
BseXI	GCAGC	5 cut(s)	203, 739, 906, 963, 1090
BsgI	GTGCAG	1 cut(s)	962
Bsh1236I	CGCG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	195, 726
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	3 cut(s)	239, 424, 1039
BsiHKCI	CYCGRG	1 cut(s)	1120
BsiSI	CCGG	2 cut(s)	196, 767
BslFI	GGGAC	3 cut(s)	188, 423, 1026
BsmFI	GGGAC	3 cut(s)	188, 423, 1026
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	2 cut(s)	195, 726
BsoBI	CYCGRG	1 cut(s)	1120
Bsp119I	TTCGAA	1 cut(s)	826
Bsp1286I	GDGCHC	3 cut(s)	239, 424, 1039
Bsp13I	TCCGGA	1 cut(s)	766
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
BspACI	CCGC	6 cut(s)	214, 228, 366, 938, 986, 1106
BspANI	GGCC	2 cut(s)	195, 726
BspCNI	CTCAG	4 cut(s)	272, 506, 564, 951
BspEI	TCCGGA	1 cut(s)	766
BspFNI	CGCG	1 cut(s)	230
BspLI	GGNNCC	3 cut(s)	688, 956, 1002
BspPI	GGATC	3 cut(s)	681, 694, 1056
BspQI	GCTCTTC	1 cut(s)	1080
BspT104I	TTCGAA	1 cut(s)	826
BsrDI	GCAATG	1 cut(s)	674
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	1044
BssMI	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
BssNI	GRCGYC	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	728, 994
Bst4CI	ACNGT	4 cut(s)	339, 734, 896, 973
Bst6I	CTCTTC	2 cut(s)	88, 1080
BstACI	GRCGYC	1 cut(s)	171
BstAUI	TGTACA	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	826
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	6 cut(s)	259, 493, 572, 959, 1005, 1086
BstF5I	GGATG	4 cut(s)	110, 219, 946, 1066
BstFNI	CGCG	1 cut(s)	230
BstKTI	GATC	5 cut(s)	689, 928, 1011, 1051, 1083
BstMBI	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	428
BstNI	CCWGG	2 cut(s)	728, 994
BstNSI	RCATGY	1 cut(s)	872
BstSCI	CCNGG	3 cut(s)	195, 726, 992
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	5 cut(s)	203, 739, 906, 963, 1090
BstV2I	GAAGAC	2 cut(s)	247, 1130
BstX2I	RGATCY	2 cut(s)	686, 1048
BstYI	RGATCY	2 cut(s)	686, 1048
BstZI	CGGCCG	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	959
BsuI	GTATCC	1 cut(s)	780
BsuRI	GGCC	2 cut(s)	195, 726
BtsCI	GGATG	4 cut(s)	110, 219, 946, 1066
BtsIMutI	CAGTG	2 cut(s)	335, 969
Cac8I	GCNNGC	1 cut(s)	371
CseI	GACGC	2 cut(s)	179, 1079
Csp6I	GTAC	2 cut(s)	160, 361
CviAII	CATG	3 cut(s)	425, 454, 869
CviQI	GTAC	2 cut(s)	160, 361
DdeI	CTNAG	6 cut(s)	259, 493, 572, 959, 1005, 1086
DpnI	GATC	5 cut(s)	688, 927, 1010, 1050, 1082
DpnII	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
EaeI	YGGCCR	1 cut(s)	193
EagI	CGGCCG	1 cut(s)	193
Eam1104I	CTCTTC	2 cut(s)	88, 1080
EarI	CTCTTC	2 cut(s)	88, 1080
Ecl136II	GAGCTC	1 cut(s)	237
EclXI	CGGCCG	1 cut(s)	193
Eco24I	GRGCYC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	106
Eco52I	CGGCCG	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	1061
Eco81I	CCTNAGG	1 cut(s)	959
Eco88I	CYCGRG	1 cut(s)	1120
EcoICRI	GAGCTC	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	726, 992
EcoRV	GATATC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	3 cut(s)	428, 457, 872
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	3 cut(s)	188, 423, 1026
FatI	CATG	3 cut(s)	424, 453, 868
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	8 cut(s)	217, 228, 367, 753, 920, 977, 987, 1104
FokI	GGATG	4 cut(s)	97, 206, 953, 1073
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	8 cut(s)	217, 228, 367, 753, 920, 977, 987, 1104
GluI	GCNGC	8 cut(s)	217, 228, 367, 753, 920, 977, 987, 1104
HaeIII	GGCC	2 cut(s)	195, 726
HapII	CCGG	2 cut(s)	196, 767
HgaI	GACGC	2 cut(s)	179, 1079
Hin1I	GRCGYC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	428, 457, 872
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	8 cut(s)	29, 152, 332, 413, 699, 707, 803, 853
HpaII	CCGG	2 cut(s)	196, 767
HphI	GGTGA	2 cut(s)	59, 84
Hpy166II	GTNNAC	3 cut(s)	151, 211, 409
Hpy188I	TCNGA	9 cut(s)	28, 130, 496, 573, 646, 741, 808, 1048, 1080
Hpy188III	TCNNGA	6 cut(s)	101, 247, 536, 665, 767, 857
Hpy8I	GTNNAC	3 cut(s)	151, 211, 409
Hpy99I	CGWCG	4 cut(s)	173, 185, 323, 446
HpyAV	CCTTC	3 cut(s)	263, 304, 991
HpyCH4III	ACNGT	4 cut(s)	339, 734, 896, 973
HpyCH4IV	ACGT	2 cut(s)	252, 321
HpyCH4V	TGCA	6 cut(s)	219, 866, 872, 902, 951, 979
HpyF10VI	GCNNNNNNNGC	1 cut(s)	428
HpyF3I	CTNAG	6 cut(s)	259, 493, 572, 959, 1005, 1086
HpySE526I	ACGT	2 cut(s)	252, 321
Hsp92I	GRCGYC	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	428, 457, 872
Kpn2I	TCCGGA	1 cut(s)	766
Kzo9I	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
LguI	GCTCTTC	1 cut(s)	1080
LmnI	GCTCC	3 cut(s)	234, 741, 1000
Lsp1109I	GCAGC	5 cut(s)	203, 739, 906, 963, 1090
LweI	GCATC	3 cut(s)	228, 853, 889
MaeII	ACGT	2 cut(s)	252, 321
MaeIII	GTNAC	6 cut(s)	353, 502, 658, 758, 965, 1017
MalI	GATC	5 cut(s)	688, 927, 1010, 1050, 1082
MboI	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
MboII	GAAGA	9 cut(s)	75, 78, 81, 247, 310, 468, 1067, 1130, 1133
MflI	RGATCY	2 cut(s)	686, 1048
MhlI	GDGCHC	3 cut(s)	239, 424, 1039
MluCI	AATT	3 cut(s)	293, 933, 946
MlyI	GAGTC	3 cut(s)	146, 326, 407
MmeI	TCCRAC	2 cut(s)	57, 304
MroI	TCCGGA	1 cut(s)	766
MroXI	GAANNNNTTC	1 cut(s)	254
MspA1I	CMGCKG	2 cut(s)	216, 366
MspI	CCGG	2 cut(s)	196, 767
MspR9I	CCNGG	3 cut(s)	197, 728, 994
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	2 cut(s)	728, 994
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	428
NciI	CCSGG	1 cut(s)	197
NdeII	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
NlaIII	CATG	3 cut(s)	428, 457, 872
NlaIV	GGNNCC	3 cut(s)	688, 956, 1002
NmuCI	GTSAC	3 cut(s)	502, 658, 1017
NspI	RCATGY	1 cut(s)	872
NspV	TTCGAA	1 cut(s)	826
PaeR7I	CTCGAG	1 cut(s)	1120
PciSI	GCTCTTC	1 cut(s)	1080
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	254
PfeI	GAWTC	5 cut(s)	29, 699, 707, 803, 853
PkrI	GCNGC	8 cut(s)	218, 229, 368, 754, 921, 978, 988, 1105
PleI	GAGTC	3 cut(s)	146, 326, 407
PpsI	GAGTC	3 cut(s)	146, 326, 407
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	726, 992
PspGI	CCWGG	2 cut(s)	726, 992
PspN4I	GGNNCC	3 cut(s)	688, 956, 1002
PspXI	VCTCGAGB	1 cut(s)	1120
PsuI	RGATCY	2 cut(s)	686, 1048
RsaI	GTAC	2 cut(s)	161, 362
RsaNI	GTAC	2 cut(s)	160, 361
SacI	GAGCTC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	1080
SatI	GCNGC	8 cut(s)	217, 228, 367, 753, 920, 977, 987, 1104
Sau3AI	GATC	5 cut(s)	686, 925, 1008, 1048, 1080
SchI	GAGTC	3 cut(s)	146, 326, 407
ScrFI	CCNGG	3 cut(s)	197, 728, 994
SduI	GDGCHC	3 cut(s)	239, 424, 1039
SfaNI	GCATC	3 cut(s)	228, 853, 889
Sfr274I	CTCGAG	1 cut(s)	1120
SfuI	TTCGAA	1 cut(s)	826
SlaI	CTCGAG	1 cut(s)	1120
SmlI	CTYRAG	5 cut(s)	116, 374, 665, 681, 1120
SmoI	CTYRAG	5 cut(s)	116, 374, 665, 681, 1120
Sse9I	AATT	3 cut(s)	293, 933, 946
SsiI	CCGC	6 cut(s)	214, 228, 366, 938, 986, 1106
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	3 cut(s)	195, 726, 992
TaaI	ACNGT	4 cut(s)	339, 734, 896, 973
TaiI	ACGT	2 cut(s)	255, 324
TaqI	TCGA	4 cut(s)	138, 710, 826, 1121
TasI	AATT	3 cut(s)	293, 933, 946
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	3 cut(s)	230, 369, 989
TfiI	GAWTC	5 cut(s)	29, 699, 707, 803, 853
TscAI	CASTG	2 cut(s)	342, 976
TseFI	GTSAC	3 cut(s)	502, 658, 1017
TseI	GCWGC	5 cut(s)	216, 752, 919, 976, 1103
Tsp45I	GTSAC	3 cut(s)	502, 658, 1017
TspDTI	ATGAA	1 cut(s)	442
TspGWI	ACGGA	2 cut(s)	679, 719
TspRI	CASTG	2 cut(s)	342, 976
XceI	RCATGY	1 cut(s)	872
XhoI	CTCGAG	1 cut(s)	1120
XmiI	GTMKAC	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.