Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Forward (+)

6527158 .. 6528853

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0081100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTGAGAAGTCAGAAACCGCTGTTTCACGCGCGGTGGGCAAGGGCTAGGACTAGAGCTGCTAAGATTGATCCACGCCACCGGTATGGACACAATTTACATTTCTATTATGATTTGTGGTTTGAAAGTGAGAGCAGTCAGCCTTTCTTCTACTGGCTGGATGTTGGAGATGGCAGAGAAATAAATCTCGAGAAATGCTTGAGGACAGCTCTACAGCGCCAATGCATCGAGTACCTTGGACCGAAAGAAAGGAAGTCCCACGAAGTAGTAGTAGTGGAAAATGGCAAGCTAATGTATAAGCAAAGTGGGATGCTTGTGAATAGTAGTGAAGGTTCCAAATCGATATTCGTGCTAAGCACAACAAGGGCTTTGTATGTTGGTCAGAAGAAGAAGGGTCAGTTTGACCATTCGAGTTTTCTATCTGGAGGTGCTACCACAGCAGCTGGAAGATTGGCTGCCCATGATGGGGTTCTTGAGGCCTTTTGGCCATACAGTGATCATTACCACCCAACTGAAGAAAACTCCATGGAATTCATCAGCTTCCTCCAAGATAACCATGTCGATCTCACTAATGTCAATAAAACTGAAGGGGAACTAACAAAGCGAAACTCATTTAAGTCGACGCAATCGGATGGCGCAAACACAACCAATGTCGATGACTTGACCGAGAAGGCACCGATCCCCGCCGTTCGTTCGGAAGTTAATGATGGCAGTGCAAAACCACCATTGTTCACCATGGGCATGCCCTTGCCTTGGCTACAGGAACTGGAGCCCAAATCGGGTGTGTGCGAGAATACCCTAGTGACCTACAGACCAGAGCACTGTAACAAGTCAACTAATCTCCCCGTGTTGGTTCAGCGAAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.89

Weight (kDa)

7.74

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	620
AccII	CGCG	2 cut(s)	32, 34
AciI	CCGC	3 cut(s)	20, 34, 684
AclWI	GGATC	2 cut(s)	65, 673
AcoI	YGGCCR	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	530
AcuI	CTGAAG	2 cut(s)	534, 606
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	5 cut(s)	465, 466, 753, 779, 850
AgeI	ACCGGT	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	125
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	5 cut(s)	59, 209, 289, 443, 540
AluI	AGCT	5 cut(s)	59, 209, 289, 443, 540
Alw21I	GWGCWC	1 cut(s)	822
AlwI	GGATC	2 cut(s)	65, 673
AlwNI	CAGNNNCTG	2 cut(s)	443, 766
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	477, 485
ApeKI	GCWGC	3 cut(s)	59, 440, 455
ApoI	RAATTY	1 cut(s)	530
AsiGI	ACCGGT	1 cut(s)	81
AspLEI	GCGC	3 cut(s)	34, 219, 638
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	724
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	239
BalI	TGGCCA	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	1 cut(s)	774
Bbv12I	GWGCWC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	46, 442, 452
BccI	CCATC	4 cut(s)	164, 458, 626, 701
BceAI	ACGGC	1 cut(s)	671
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BclI	TGATCA	1 cut(s)	496
BfaI	CTAG	3 cut(s)	48, 54, 800
BfmI	CTRYAG	3 cut(s)	212, 758, 808
BfoI	RGCGCY	1 cut(s)	220
BisI	GCNGC	3 cut(s)	60, 441, 456
BlpI	GCTNAGC	1 cut(s)	353
BlsI	GCNGC	3 cut(s)	61, 442, 457
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	3 cut(s)	334, 675, 771
BmsI	GCATC	2 cut(s)	234, 300
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	2 cut(s)	444, 788
Bpu1102I	GCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	2 cut(s)	220, 494
Bsa29I	ATCGAT	1 cut(s)	341
BsaJI	CCNNGG	4 cut(s)	235, 525, 735, 752
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	5 cut(s)	465, 466, 753, 779, 850
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	2 cut(s)	158, 771
BseCI	ATCGAT	1 cut(s)	341
BseDI	CCNNGG	4 cut(s)	235, 525, 735, 752
BseGI	GGATG	3 cut(s)	166, 315, 637
BseLI	CCNNNNNNNGG	5 cut(s)	465, 466, 753, 779, 850
BseNI	ACTGG	2 cut(s)	158, 771
BseXI	GCAGC	3 cut(s)	46, 442, 452
Bsh1236I	CGCG	2 cut(s)	32, 34
BshFI	GGCC	2 cut(s)	479, 487
BshNI	GGYRCC	1 cut(s)	673
BshTI	ACCGGT	1 cut(s)	81
BshVI	ATCGAT	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	5 cut(s)	465, 466, 753, 779, 850
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	479, 487
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	774, 822
Bsp143I	GATC	4 cut(s)	70, 496, 562, 678
Bsp1720I	GCTNAGC	1 cut(s)	353
Bsp19I	CCATGG	2 cut(s)	525, 735
BspACI	CCGC	3 cut(s)	20, 34, 684
BspANI	GGCC	2 cut(s)	479, 487
BspDI	ATCGAT	1 cut(s)	341
BspFNI	CGCG	2 cut(s)	32, 34
BspLI	GGNNCC	3 cut(s)	334, 675, 771
BspPI	GGATC	2 cut(s)	65, 673
BspT107I	GGYRCC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	158, 771
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	4 cut(s)	235, 525, 735, 752
BssMI	GATC	4 cut(s)	70, 496, 562, 678
BssT1I	CCWWGG	4 cut(s)	235, 525, 735, 752
Bst4CI	ACNGT	2 cut(s)	494, 824
BstC8I	GCNNGC	2 cut(s)	287, 743
BstDEI	CTNAG	2 cut(s)	63, 353
BstDSI	CCRYGG	2 cut(s)	525, 735
BstF5I	GGATG	3 cut(s)	166, 315, 637
BstFNI	CGCG	2 cut(s)	32, 34
BstH2I	RGCGCY	1 cut(s)	220
BstHHI	GCGC	3 cut(s)	34, 219, 638
BstKTI	GATC	4 cut(s)	73, 499, 565, 681
BstMBI	GATC	4 cut(s)	70, 496, 562, 678
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 437
BstNSI	RCATGY	1 cut(s)	745
BstSFI	CTRYAG	3 cut(s)	212, 758, 808
BstUI	CGCG	2 cut(s)	32, 34
BstV1I	GCAGC	3 cut(s)	46, 442, 452
BstXI	CCANNNNNNTGG	1 cut(s)	86
Bsu15I	ATCGAT	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	479, 487
BsuTUI	ATCGAT	1 cut(s)	341
BtgI	CCRYGG	2 cut(s)	525, 735
BtsCI	GGATG	3 cut(s)	166, 315, 637
BtsI	GCAGTG	1 cut(s)	718
BtsIMutI	CAGTG	3 cut(s)	499, 718, 820
Cac8I	GCNNGC	2 cut(s)	287, 743
CaiI	CAGNNNCTG	2 cut(s)	443, 766
CfoI	GCGC	3 cut(s)	34, 219, 638
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	341
CseI	GACGC	1 cut(s)	631
Csp6I	GTAC	1 cut(s)	232
CspAI	ACCGGT	1 cut(s)	81
CviAII	CATG	5 cut(s)	461, 526, 557, 736, 742
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	63, 353
DpnI	GATC	4 cut(s)	72, 498, 564, 680
DpnII	GATC	4 cut(s)	70, 496, 562, 678
EaeI	YGGCCR	1 cut(s)	485
Eco130I	CCWWGG	4 cut(s)	235, 525, 735, 752
Eco147I	AGGCCT	1 cut(s)	479
Eco24I	GRGCYC	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	2 cut(s)	534, 606
Eco88I	CYCGRG	1 cut(s)	188
EcoRI	GAATTC	1 cut(s)	530
EcoT14I	CCWWGG	4 cut(s)	235, 525, 735, 752
EcoT22I	ATGCAT	1 cut(s)	227
EcoT38I	GRGCYC	1 cut(s)	774
ErhI	CCWWGG	4 cut(s)	235, 525, 735, 752
FaeI	CATG	5 cut(s)	464, 529, 560, 739, 745
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	5 cut(s)	460, 525, 556, 735, 741
FauI	CCCGC	1 cut(s)	691
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	3 cut(s)	60, 441, 456
FokI	GGATG	3 cut(s)	173, 322, 644
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	3 cut(s)	60, 441, 456
FspBI	CTAG	3 cut(s)	48, 54, 800
GlaI	GCGC	3 cut(s)	33, 218, 637
GluI	GCNGC	3 cut(s)	60, 441, 456
GsuI	CTGGAG	2 cut(s)	444, 788
HaeII	RGCGCY	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	479, 487
HapII	CCGG	1 cut(s)	82
HgaI	GACGC	1 cut(s)	631
HhaI	GCGC	3 cut(s)	34, 219, 638
Hin1II	CATG	5 cut(s)	464, 529, 560, 739, 745
Hin6I	GCGC	3 cut(s)	32, 217, 636
HinP1I	GCGC	3 cut(s)	32, 217, 636
HincII	GTYRAC	2 cut(s)	621, 834
HindII	GTYRAC	2 cut(s)	621, 834
HpaII	CCGG	1 cut(s)	82
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	3 cut(s)	621, 732, 834
Hpy188I	TCNGA	4 cut(s)	15, 384, 631, 697
Hpy188III	TCNNGA	4 cut(s)	188, 190, 423, 473
Hpy8I	GTNNAC	3 cut(s)	621, 732, 834
Hpy99I	CGWCG	1 cut(s)	625
HpyAV	CCTTC	4 cut(s)	323, 385, 581, 664
HpyCH4III	ACNGT	2 cut(s)	494, 824
HpyCH4V	TGCA	2 cut(s)	225, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 437
HpyF3I	CTNAG	2 cut(s)	63, 353
Hsp92II	CATG	5 cut(s)	464, 529, 560, 739, 745
HspAI	GCGC	3 cut(s)	32, 217, 636
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	4 cut(s)	70, 496, 562, 678
LmnI	GCTCC	1 cut(s)	769
LpnPI	CCDG	8 cut(s)	95, 139, 143, 408, 429, 746, 752, 828
Lsp1109I	GCAGC	3 cut(s)	46, 442, 452
LweI	GCATC	2 cut(s)	234, 300
MaeI	CTAG	3 cut(s)	48, 54, 800
MaeIII	GTNAC	2 cut(s)	802, 824
MalI	GATC	4 cut(s)	72, 498, 564, 680
MboI	GATC	4 cut(s)	70, 496, 562, 678
MboII	GAAGA	5 cut(s)	139, 397, 400, 459, 527
MhlI	GDGCHC	2 cut(s)	774, 822
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	2 cut(s)	94, 530
MluNI	TGGCCA	1 cut(s)	487
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	4 cut(s)	195, 419, 469, 554
Mox20I	TGGCCA	1 cut(s)	487
Mph1103I	ATGCAT	1 cut(s)	227
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	2 cut(s)	615, 702
MslI	CAYNNNNRTG	2 cut(s)	84, 740
Msp20I	TGGCCA	1 cut(s)	487
MspA1I	CMGCKG	2 cut(s)	22, 443
MspI	CCGG	1 cut(s)	82
MvnI	CGCG	2 cut(s)	32, 34
MwoI	GCNNNNNNNGC	2 cut(s)	38, 437
NcoI	CCATGG	2 cut(s)	525, 735
NdeII	GATC	4 cut(s)	70, 496, 562, 678
NlaIII	CATG	5 cut(s)	464, 529, 560, 739, 745
NlaIV	GGNNCC	3 cut(s)	334, 675, 771
NmuCI	GTSAC	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	1 cut(s)	745
PaeI	GCATGC	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	188
PceI	AGGCCT	1 cut(s)	479
PinAI	ACCGGT	1 cut(s)	81
PkrI	GCNGC	3 cut(s)	61, 442, 457
PspN4I	GGNNCC	3 cut(s)	334, 675, 771
PspPI	GGNCC	1 cut(s)	239
PsrI	GAACNNNNNNTAC	2 cut(s)	316, 348
PstNI	CAGNNNCTG	2 cut(s)	443, 766
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	84, 740
SalI	GTCGAC	1 cut(s)	619
SaqAI	TTAA	2 cut(s)	615, 702
SatI	GCNGC	3 cut(s)	60, 441, 456
Sau3AI	GATC	4 cut(s)	70, 496, 562, 678
Sau96I	GGNCC	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	774, 822
SetI	ASST	9 cut(s)	61, 211, 237, 291, 334, 430, 445, 542, 809
SfaNI	GCATC	2 cut(s)	234, 300
SfcI	CTRYAG	3 cut(s)	212, 758, 808
Sfr274I	CTCGAG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	239
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	2 cut(s)	84, 740
SmlI	CTYRAG	3 cut(s)	188, 199, 473
SmoI	CTYRAG	3 cut(s)	188, 199, 473
SphI	GCATGC	1 cut(s)	745
Sse9I	AATT	2 cut(s)	94, 530
SseBI	AGGCCT	1 cut(s)	479
SsiI	CCGC	3 cut(s)	20, 34, 684
SspMI	CTAG	3 cut(s)	48, 54, 800
StuI	AGGCCT	1 cut(s)	479
StyI	CCWWGG	4 cut(s)	235, 525, 735, 752
TaaI	ACNGT	2 cut(s)	494, 824
TaqI	TCGA	7 cut(s)	189, 228, 341, 410, 561, 620, 654
TaqII	GACCGA	2 cut(s)	256, 680
TasI	AATT	2 cut(s)	94, 530
Tru1I	TTAA	2 cut(s)	615, 702
Tru9I	TTAA	2 cut(s)	615, 702
TscAI	CASTG	3 cut(s)	499, 718, 827
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	3 cut(s)	59, 440, 455
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	1 cut(s)	523
TspRI	CASTG	3 cut(s)	499, 718, 827
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	530
XceI	RCATGY	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	620
XspI	CTAG	3 cut(s)	48, 54, 800
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.