Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8434585.1

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 941

Gene Structure 941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8434585.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 860 bp

atggcagccggagaagaggctaacttgtcaaccttgaagtctcaactgagcctaacacatgaaatgtggaagctggagatggagcagagtcagtcctacgtggaggtattgcaaaagaagcttatagaggtagaggcttgtatagaggggtctgatgaagactcaaaaaaggaattagaggttctttggcggagagttaagacggctgccagtttgttaacatacttgaaatcaaaagcaagaataatggctgttcctcatttagcccatacagcatgtggcatcaaacaatctgaaggagtggggcttgttgataaaaatggtacaccgttggctggatggtctcggaatgttgatctttcttcctttgaaattccagatgaagattcttcaattgggattggcaagcaactggactctctagatgaacaagatgcagcttatatcagtgaactgcttaagtctgtgcagatggttacagatgtaatggaagctctagttaagagagttatattggcagaatctgaaacggcagttgagaaggagaaggtaacttttggtcaggaagaaattaagaagaagtccatccaaattgagaacatgtctttgaagttggaggagatggagcggtttgctctaggtacaaatggtattctaaatgaaatgcggcaaagagttgaggatttggttcaagagacatctatacagagggaacgagccacagaaaatgaacaggagctttgccgggtgaagcgggactttgagtctctaaaatcgtatgtcagcagtctcatcactgtacgagaaacattgctttcgtcagagaagcagtttcaaactattgagaggctgtttgagcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

287

Amino Acids

32.54

Weight (kDa)

4.94

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	628
AciI	CCGC	4 cut(s)	190, 628, 667, 754
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	325, 643, 801
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	7 cut(s)	37, 229, 371, 393, 610, 692, 836
AhdI	GACNNNNNGTC	1 cut(s)	763
AluBI	AGCT	5 cut(s)	73, 121, 440, 494, 739
AluI	AGCT	5 cut(s)	73, 121, 440, 494, 739
Alw26I	GTCTC	5 cut(s)	45, 348, 689, 771, 794
AlwNI	CAGNNNCTG	1 cut(s)	524
ApeKI	GCWGC	3 cut(s)	5, 206, 437
ApoI	RAATTY	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	1 cut(s)	760
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	17, 193, 449
BccI	CCATC	5 cut(s)	73, 333, 466, 593, 616
BceAI	ACGGC	2 cut(s)	219, 546
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BfaI	CTAG	3 cut(s)	422, 497, 638
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	4 cut(s)	6, 207, 438, 668
BlsI	GCNGC	4 cut(s)	7, 208, 439, 669
Bme1390I	CCNGG	1 cut(s)	746
BmeRI	GACNNNNNGTC	1 cut(s)	763
BmrFI	CCNGG	1 cut(s)	746
BmsI	GCATC	2 cut(s)	291, 424
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	210, 417
Bse3DI	GCAATG	1 cut(s)	809
BseGI	GGATG	2 cut(s)	344, 585
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	210, 417
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	17, 193, 449
BsgI	GTGCAG	1 cut(s)	488
BsiSI	CCGG	2 cut(s)	9, 745
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BsmFI	GGGAC	1 cut(s)	770
Bso31I	GGTCTC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	4 cut(s)	190, 628, 667, 754
BspCNI	CTCAG	1 cut(s)	39
BspTI	CTTAAG	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	348
BsrBI	CCGCTC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	2 cut(s)	210, 417
BssMI	GATC	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	330, 799
Bst6I	CTCTTC	1 cut(s)	9
BstAFI	CTTAAG	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	344, 585
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 272, 856
BstNSI	RCATGY	2 cut(s)	279, 604
BstSCI	CCNGG	1 cut(s)	744
BstV1I	GCAGC	3 cut(s)	17, 193, 449
BstV2I	GAAGAC	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	344, 585
BtsIMutI	CAGTG	2 cut(s)	454, 795
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	324, 642, 800
CviAII	CATG	3 cut(s)	59, 276, 601
CviQI	GTAC	3 cut(s)	324, 642, 800
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	763
EarI	CTCTTC	1 cut(s)	9
EciI	GGCGGA	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	315
FaeI	CATG	3 cut(s)	62, 279, 604
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	3 cut(s)	58, 275, 600
FauI	CCCGC	1 cut(s)	747
Fnu4HI	GCNGC	4 cut(s)	6, 207, 438, 668
FokI	GGATG	2 cut(s)	351, 572
Fsp4HI	GCNGC	4 cut(s)	6, 207, 438, 668
FspBI	CTAG	3 cut(s)	422, 497, 638
GluI	GCNGC	4 cut(s)	6, 207, 438, 668
GsuI	CTGGAG	1 cut(s)	95
HapII	CCGG	2 cut(s)	9, 745
Hin1II	CATG	3 cut(s)	62, 279, 604
HincII	GTYRAC	2 cut(s)	30, 219
HindII	GTYRAC	2 cut(s)	30, 219
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	6 cut(s)	88, 161, 386, 416, 521, 764
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	9, 745
HphI	GGTGA	1 cut(s)	760
Hpy166II	GTNNAC	4 cut(s)	30, 219, 326, 452
Hpy188I	TCNGA	5 cut(s)	154, 295, 348, 526, 823
Hpy188III	TCNNGA	4 cut(s)	377, 422, 563, 692
Hpy8I	GTNNAC	4 cut(s)	30, 219, 326, 452
HpyAV	CCTTC	3 cut(s)	290, 535, 541
HpyCH4III	ACNGT	2 cut(s)	330, 799
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	3 cut(s)	112, 437, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 272, 856
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	3 cut(s)	62, 279, 604
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	3 cut(s)	82, 625, 736
LpnPI	CCDG	9 cut(s)	22, 59, 223, 321, 390, 398, 548, 719, 758
Lsp1109I	GCAGC	3 cut(s)	17, 193, 449
LweI	GCATC	2 cut(s)	291, 424
MaeI	CTAG	3 cut(s)	422, 497, 638
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	475, 550
MalI	GATC	1 cut(s)	357
MbiI	CCGCTC	1 cut(s)	628
MboI	GATC	1 cut(s)	355
MboII	GAAGA	7 cut(s)	26, 170, 354, 381, 395, 578, 589
MfeI	CAATTG	1 cut(s)	393
MluCI	AATT	5 cut(s)	173, 372, 393, 570, 591
MlyI	GAGTC	4 cut(s)	97, 155, 410, 773
MmeI	TCCRAC	1 cut(s)	594
MseI	TTAA	5 cut(s)	198, 218, 459, 501, 573
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	2 cut(s)	9, 745
MspR9I	CCNGG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	118, 272, 856
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	62, 279, 604
NspI	RCATGY	2 cut(s)	279, 604
PciI	ACATGT	1 cut(s)	600
PfeI	GAWTC	2 cut(s)	386, 521
PkrI	GCNGC	4 cut(s)	7, 208, 439, 669
PleI	GAGTC	4 cut(s)	96, 155, 410, 772
PpsI	GAGTC	4 cut(s)	96, 155, 410, 772
Ppu21I	YACGTR	1 cut(s)	100
PscI	ACATGT	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	524
RsaI	GTAC	3 cut(s)	325, 643, 801
RsaNI	GTAC	3 cut(s)	324, 642, 800
SaqAI	TTAA	5 cut(s)	198, 218, 459, 501, 573
SatI	GCNGC	4 cut(s)	6, 207, 438, 668
Sau3AI	GATC	1 cut(s)	355
SchI	GAGTC	4 cut(s)	97, 155, 410, 773
ScrFI	CCNGG	1 cut(s)	746
SfaNI	GCATC	2 cut(s)	291, 424
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	173, 372, 393, 570, 591
SsiI	CCGC	4 cut(s)	190, 628, 667, 754
SspMI	CTAG	3 cut(s)	422, 497, 638
StyD4I	CCNGG	1 cut(s)	744
TaaI	ACNGT	2 cut(s)	330, 799
TaiI	ACGT	1 cut(s)	102
TasI	AATT	5 cut(s)	173, 372, 393, 570, 591
TauI	GCSGC	1 cut(s)	670
TfiI	GAWTC	2 cut(s)	386, 521
Tru1I	TTAA	5 cut(s)	198, 218, 459, 501, 573
Tru9I	TTAA	5 cut(s)	198, 218, 459, 501, 573
TscAI	CASTG	2 cut(s)	454, 802
TseI	GCWGC	3 cut(s)	5, 206, 437
TspDTI	ATGAA	6 cut(s)	75, 171, 396, 441, 675, 744
TspRI	CASTG	2 cut(s)	454, 802
Vha464I	CTTAAG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	372
XbaI	TCTAGA	1 cut(s)	421
XceI	RCATGY	2 cut(s)	279, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	3 cut(s)	422, 497, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.