pycom02g10520

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0006480
Physical Location & Seq
Forward (+)
7295924 .. 7297110
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10520.1

Sequence Viewer

Length: 564 bp
ATGGTTACGGATGTAATGGAAGCTCTTGTCAAGAGAGTTTTACTGGCAGAATCTGAAACTGCAATTGAGAAGGAGAAGGTGACTTTTGGTCAGGAAGAAATTAAAAAAAAGTCAGTTCAAATTGAGAACATGTCTGTGAAGTTAGAGGAGATGGAACGCTTCGCTCTAGGAACAAATGGTATTTTAAATGAAATGCGGCAGAGAGTTGAGGATTTGGTTGAAGAAACTACTAGACAGCGGCTACGAGCTGCAGAAAACGAACAGGAGCTTTGTCGTGTGAAGCAGGACTTTGAGTCTCTCAAATCATATGTCAGCAGTCTTATCACTGTGCGAGAAACTCTGCTTTCATCAGAGAAGCAGTTTCAAACTATAGAGAGACTGTTTGAGCGGCTAGTTGCAAAAACAACACAGTTAGAGGGTGAGAAAATCCAGAAAGAGACCGAAGTCCAGAAACTTATGGAAGAAAATGTGAAGCTGAGCGCTCTTCTTGACAAGAAAGAGGCCCAACTTCTGGCCATGAATGAACAATGCAAGGTGATGGCTTTGAGTGCTTTGAACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

21.58

Weight (kDa)

5.1

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 511
AccBSI CCGCTC 1 cut(s) 388
AciI CCGC 3 cut(s) 196, 238, 388
AcoI YGGCCR 1 cut(s) 513
AfeI AGCGCT 1 cut(s) 481
AfiI CCNNNNNNNGG 1 cut(s) 511
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 4 cut(s) 119, 221, 365, 556
AhdI GACNNNNNGTC 2 cut(s) 87, 292
AluBI AGCT 4 cut(s) 23, 248, 268, 475
AluI AGCT 4 cut(s) 23, 248, 268, 475
Alw26I GTCTC 3 cut(s) 300, 370, 431
AlwNI CAGNNNCTG 1 cut(s) 53
Aor51HI AGCGCT 1 cut(s) 481
AoxI GGCC 2 cut(s) 501, 513
ApeKI GCWGC 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AspLEI GCGC 1 cut(s) 482
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 3 cut(s) 91, 431, 547
BalI TGGCCA 1 cut(s) 515
BbvI GCAGC 1 cut(s) 235
BccI CCATC 2 cut(s) 145, 532
BcoDI GTCTC 3 cut(s) 300, 370, 431
BfaI CTAG 3 cut(s) 167, 231, 392
BfmI CTRYAG 2 cut(s) 249, 369
BfoI RGCGCY 1 cut(s) 483
BisI GCNGC 4 cut(s) 197, 239, 249, 389
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 4 cut(s) 198, 240, 250, 390
BmeRI GACNNNNNGTC 2 cut(s) 87, 292
BmgT120I GGNCC 1 cut(s) 502
BoxI GACNNNNGTC 1 cut(s) 443
Bpu1102I GCTNAGC 1 cut(s) 476
BsaI GGTCTC 1 cut(s) 431
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 2 cut(s) 503, 515
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 3 cut(s) 300, 370, 431
BsnI GGCC 2 cut(s) 503, 515
Bso31I GGTCTC 1 cut(s) 431
Bsp1720I GCTNAGC 1 cut(s) 476
BspACI CCGC 3 cut(s) 196, 238, 388
BspANI GGCC 2 cut(s) 503, 515
BspCNI CTCAG 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 253
BspQI GCTCTTC 1 cut(s) 489
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 388
BsrI ACTGG 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 328, 381, 411
Bst6I CTCTTC 1 cut(s) 489
BstDEI CTNAG 1 cut(s) 476
BstF5I GGATG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 1 cut(s) 482
BstMAI GTCTC 3 cut(s) 300, 370, 431
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNSI RCATGY 1 cut(s) 133
BstPAI GACNNNNGTC 1 cut(s) 443
BstSFI CTRYAG 2 cut(s) 249, 369
BstV1I GCAGC 1 cut(s) 235
BsuRI GGCC 2 cut(s) 503, 515
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 482
Cfr13I GGNCC 1 cut(s) 502
CviAII CATG 2 cut(s) 130, 517
CviJI RGCY 9 cut(s) 23, 241, 248, 268, 391, 475, 503, 515, 542
CviKI_1 RGCY 9 cut(s) 23, 241, 248, 268, 391, 475, 503, 515, 542
DdeI CTNAG 1 cut(s) 476
DraI TTTAAA 1 cut(s) 186
DriI GACNNNNNGTC 2 cut(s) 87, 292
EaeI YGGCCR 1 cut(s) 513
Eam1104I CTCTTC 1 cut(s) 489
Eam1105I GACNNNNNGTC 2 cut(s) 87, 292
EarI CTCTTC 1 cut(s) 489
Eco31I GGTCTC 1 cut(s) 431
Eco47III AGCGCT 1 cut(s) 481
FaeI CATG 2 cut(s) 133, 520
FaiI YATR 6 cut(s) 131, 307, 309, 371, 458, 518
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FatI CATG 2 cut(s) 129, 516
FauNDI CATATG 1 cut(s) 307
Fnu4HI GCNGC 4 cut(s) 197, 239, 249, 389
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 4 cut(s) 197, 239, 249, 389
FspBI CTAG 3 cut(s) 167, 231, 392
GlaI GCGC 1 cut(s) 481
GluI GCNGC 4 cut(s) 197, 239, 249, 389
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 2 cut(s) 503, 515
HhaI GCGC 1 cut(s) 482
Hin1II CATG 2 cut(s) 133, 520
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HinfI GANTC 2 cut(s) 50, 293
HphI GGTGA 3 cut(s) 91, 431, 547
Hpy188I TCNGA 2 cut(s) 55, 352
Hpy188III TCNNGA 5 cut(s) 31, 92, 430, 448, 488
HpyAV CCTTC 2 cut(s) 64, 70
HpyCH4III ACNGT 3 cut(s) 328, 381, 411
HpyCH4V TGCA 4 cut(s) 62, 251, 398, 531
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 1 cut(s) 476
Hsp92II CATG 2 cut(s) 133, 520
HspAI GCGC 1 cut(s) 480
LguI GCTCTTC 1 cut(s) 489
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 7 cut(s) 29, 77, 248, 269, 443, 461, 497
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 3 cut(s) 167, 231, 392
MaeIII GTNAC 2 cut(s) 4, 79
MbiI CCGCTC 1 cut(s) 388
MboII GAAGA 4 cut(s) 107, 233, 473, 476
MfeI CAATTG 1 cut(s) 63
MlsI TGGCCA 1 cut(s) 515
MluCI AATT 3 cut(s) 63, 99, 120
MluNI TGGCCA 1 cut(s) 515
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 4 cut(s) 139, 202, 409, 493
Mox20I TGGCCA 1 cut(s) 515
MscI TGGCCA 1 cut(s) 515
MseI TTAA 2 cut(s) 102, 185
MslI CAYNNNNRTG 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 515
MspA1I CMGCKG 1 cut(s) 238
MunI CAATTG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 548
NdeI CATATG 1 cut(s) 307
NlaIII CATG 2 cut(s) 133, 520
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 133
PciI ACATGT 1 cut(s) 129
PciSI GCTCTTC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 50
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 4 cut(s) 198, 240, 250, 390
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 1 cut(s) 129
PshAI GACNNNNGTC 1 cut(s) 443
PspPI GGNCC 1 cut(s) 502
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 489
SaqAI TTAA 2 cut(s) 102, 185
SatI GCNGC 4 cut(s) 197, 239, 249, 389
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 1 cut(s) 302
SetI ASST 6 cut(s) 25, 81, 250, 270, 477, 537
SfcI CTRYAG 2 cut(s) 249, 369
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 3 cut(s) 63, 99, 120
SsiI CCGC 3 cut(s) 196, 238, 388
SspMI CTAG 3 cut(s) 167, 231, 392
TaaI ACNGT 3 cut(s) 328, 381, 411
TaqII GACCGA 1 cut(s) 455
TasI AATT 3 cut(s) 63, 99, 120
TauI GCSGC 3 cut(s) 199, 241, 391
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 102, 185
Tru9I TTAA 2 cut(s) 102, 185
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 1 cut(s) 248
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 4 cut(s) 204, 336, 533, 537
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 331
Van91I CCANNNNNTGG 1 cut(s) 511
XceI RCATGY 1 cut(s) 133
XspI CTAG 3 cut(s) 167, 231, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.