Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Forward (+)

20452819 .. 20454296

Gene Structure 1478 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1246600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAACACTTTGCACTAGGTACAAATGGTATTTTAAATGAAATGCGGCAGAGAGTTGAGGATTTGGTTGAAGAAACTACTAGGCAGAGGCTACGAGCTGCAGAAAATGAACAGGAGCTTTGCCGTGTCAAGCGGGACTTTGAGTCTCTGAAATCATATGTTAGCAGTCTTATAACTGTACGAGAAACTCTGCTTTCATCTGAGAAACAGTTTCAAACTATAGAGAGACTGTTTGAGCGGCTAGTTGCGAAAACAACACAGTTAGAGGGTGAGAAAATCCAGAAAGAGACGGAAGTCCAGAAACTTATGGAAGAAAATGTGAAGCTGAGCGCTCTTCTTGACAAGAAAGAGGCCCAACTTCTGGCCATGAATGAACAATGCAAGGTGATGGCTTTGAGTGCCTCGAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.88

Weight (kDa)

5.41

Isoelectric Point (pI)

32.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	173
AccB7I	CCANNNNNTGG	1 cut(s)	361
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	3 cut(s)	46, 133, 238
AcoI	YGGCCR	1 cut(s)	363
AfaI	GTAC	2 cut(s)	22, 180
AfeI	AGCGCT	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	2 cut(s)	71, 215
AhdI	GACNNNNNGTC	1 cut(s)	142
AluBI	AGCT	3 cut(s)	98, 118, 325
AluI	AGCT	3 cut(s)	98, 118, 325
Alw26I	GTCTC	3 cut(s)	150, 220, 281
Aor51HI	AGCGCT	1 cut(s)	331
AoxI	GGCC	2 cut(s)	351, 363
ApeKI	GCWGC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	281, 397
BalI	TGGCCA	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	108
BcoDI	GTCTC	3 cut(s)	150, 220, 281
BfaI	CTAG	3 cut(s)	17, 81, 242
BfmI	CTRYAG	2 cut(s)	99, 219
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	3 cut(s)	47, 99, 239
BlpI	GCTNAGC	1 cut(s)	326
BlsI	GCNGC	3 cut(s)	48, 100, 240
BmeRI	GACNNNNNGTC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	352
BoxI	GACNNNNGTC	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMII	CTCAG	2 cut(s)	192, 317
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	353, 365
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	3 cut(s)	150, 220, 281
BsmBI	CGTCTC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	2 cut(s)	353, 365
Bsp1720I	GCTNAGC	1 cut(s)	326
BspACI	CCGC	3 cut(s)	46, 133, 238
BspANI	GGCC	2 cut(s)	353, 365
BspCNI	CTCAG	2 cut(s)	193, 318
BspMAI	CTGCAG	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	339
BsrBI	CCGCTC	1 cut(s)	238
Bst4CI	ACNGT	4 cut(s)	178, 210, 231, 261
Bst6I	CTCTTC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	201, 326
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstMAI	GTCTC	3 cut(s)	150, 220, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	398
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSFI	CTRYAG	2 cut(s)	99, 219
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	353, 365
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	2 cut(s)	21, 179
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	8 cut(s)	91, 98, 118, 241, 325, 353, 365, 392
CviKI_1	RGCY	8 cut(s)	91, 98, 118, 241, 325, 353, 365, 392
CviQI	GTAC	2 cut(s)	21, 179
DdeI	CTNAG	2 cut(s)	201, 326
DraI	TTTAAA	1 cut(s)	36
DriI	GACNNNNNGTC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	339
Eam1105I	GACNNNNNGTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	339
Eco47III	AGCGCT	1 cut(s)	331
Esp3I	CGTCTC	1 cut(s)	281
FaeI	CATG	1 cut(s)	370
FaiI	YATR	6 cut(s)	157, 159, 173, 221, 308, 368
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	366
FauI	CCCGC	1 cut(s)	126
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	47, 99, 239
Fsp4HI	GCNGC	3 cut(s)	47, 99, 239
FspBI	CTAG	3 cut(s)	17, 81, 242
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	3 cut(s)	47, 99, 239
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	353, 365
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	370
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	2 cut(s)	281, 397
Hpy188I	TCNGA	2 cut(s)	150, 202
Hpy188III	TCNNGA	3 cut(s)	280, 298, 338
HpyCH4III	ACNGT	4 cut(s)	178, 210, 231, 261
HpyCH4V	TGCA	3 cut(s)	14, 101, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	398
HpyF3I	CTNAG	2 cut(s)	201, 326
Hsp92II	CATG	1 cut(s)	370
HspAI	GCGC	1 cut(s)	330
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	98, 293, 311, 347
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	3 cut(s)	17, 81, 242
MbiI	CCGCTC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	83, 323, 326
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	52, 81, 259, 343, 412
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	398
NdeI	CATATG	1 cut(s)	157
NlaIII	CATG	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	48, 100, 240
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PshAI	GACNNNNGTC	1 cut(s)	293
PsiI	TTATAA	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	22, 180
RsaNI	GTAC	2 cut(s)	21, 179
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	3 cut(s)	47, 99, 239
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	152
SetI	ASST	5 cut(s)	22, 100, 120, 327, 387
SfcI	CTRYAG	2 cut(s)	99, 219
SsiI	CCGC	3 cut(s)	46, 133, 238
SspMI	CTAG	3 cut(s)	17, 81, 242
TaaI	ACNGT	4 cut(s)	178, 210, 231, 261
TaqI	TCGA	1 cut(s)	404
TauI	GCSGC	2 cut(s)	49, 241
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	5 cut(s)	54, 123, 186, 383, 387
TspGWI	ACGGA	1 cut(s)	305
Van91I	CCANNNNNTGG	1 cut(s)	361
XspI	CTAG	3 cut(s)	17, 81, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.