Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Reverse (-)

81026965 .. 81029961

Gene Structure 2997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGAGCCGGAGAAGAGTTTGACTTGTCAAGCTTGAAGTCTCAACTGAGCCAAACACATGAAATGTGGAAGCTGGAGATGGAGCAGCGCCAGTCCCACGTGGATGTATTGCAAAAGAAGCTTATGGAGGTAGAGGCTTGTATAGAGGGGTCTGATGAAGACTCAAAAAAGGAATTAGAGGTTCTTTGGCGGAGAGTTAAGACAGCTGCCAGTTTGTTAACATACTTGAAATCAAAAGCAAGAATAATGGCTGTTCCTCATTTAGCCCATACAGCATGTGGCATCAAACAATCTGAAGGAGTGGGGCTTGTTGATAAAAATGGTACACTGTTGGCTGGATGGTCTCGGAATGTTGATCTTTCTTCCTTTGAAATTCCAGATGAAGATTCTTCAATTGGGATTGGCAAGCAACAGGACTCTTTAGATGAACAAGATGCAGCTTATATCAGTGAACTGCTTAAGTCTGTGCAGATGGTTACAGATGTAATGGAGGCTCTAGTTAAGAGAGTTATATTGGCAGAATCTGAAACGGCAGTTGAGAAGGAGAAGGTAACTTTTGGTCAGGAAGAAATTAAGAAAAAGTCCATCCAAATTGAGAACATGTCTTTGAAGTTGGAGGAGATGGAGCGGTTTGCTCTAGGTACAAATGGTATTCTAAATGAAATGCGGCAGAGAGTTGAGGATTTGGTTCAAGAGACATCTATACAGAGGGAACGAGCCACAGAAAATGAACAGGAGCTTAGCCGGGTGAAGCGGGACTTTGAGTCTCTAAAATCATATGTCAGCAGTCTCATCACTGTACGAGAAACATTGCTTTCGTCAGAGAAGCAGTTTCAAACTATTGAGAGGCTGTTTGAGCGGCTAGTTGCAAAAACAACACAGTTAGAGGGTGAGAAAACACAGAAAGAGGTGGAAGTTCAAAAACTTATGGAAGAGAATGTGAGGCTGAGTGCTCTTCTTGATAAGAAAGAAGCCCAACTCCATGCCATGAATGAACAATGCAAGGTGATGGCTTTGAGTGCTTCGAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

39.04

Weight (kDa)

5.06

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	628, 859
AciI	CCGC	5 cut(s)	190, 628, 667, 754, 859
AcsI	RAATTY	1 cut(s)	372
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	100
AfaI	GTAC	3 cut(s)	325, 643, 801
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	8 cut(s)	37, 229, 371, 393, 610, 692, 836, 920
AhdI	GACNNNNNGTC	1 cut(s)	763
AluBI	AGCT	6 cut(s)	33, 73, 121, 206, 440, 739
AluI	AGCT	6 cut(s)	33, 73, 121, 206, 440, 739
Alw21I	GWGCWC	1 cut(s)	955
Alw26I	GTCTC	5 cut(s)	45, 348, 689, 771, 794
AlwNI	CAGNNNCTG	1 cut(s)	524
ApeKI	GCWGC	3 cut(s)	85, 206, 437
ApoI	RAATTY	1 cut(s)	372
AspLEI	GCGC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	3 cut(s)	760, 902, 1018
AsuII	TTCGAA	1 cut(s)	1025
BbrPI	CACGTG	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	955
BbvI	GCAGC	3 cut(s)	97, 193, 449
BccI	CCATC	6 cut(s)	73, 333, 466, 593, 616, 1003
BceAI	ACGGC	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BfaI	CTAG	3 cut(s)	497, 638, 863
BfoI	RGCGCY	1 cut(s)	91
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	5 cut(s)	86, 207, 438, 668, 860
BlpI	GCTNAGC	1 cut(s)	740
BlsI	GCNGC	5 cut(s)	87, 208, 439, 669, 861
Bme1390I	CCNGG	1 cut(s)	746
BmeRI	GACNNNNNGTC	1 cut(s)	763
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	746
BmsI	GCATC	2 cut(s)	291, 424
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	95
Bpu1102I	GCTNAGC	1 cut(s)	740
Bpu14I	TTCGAA	1 cut(s)	1025
BpuMI	CCSGG	1 cut(s)	746
BsaAI	YACGTR	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	91, 210
Bse3DI	GCAATG	1 cut(s)	809
BseGI	GGATG	3 cut(s)	109, 344, 585
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	2 cut(s)	38, 938
BseNI	ACTGG	2 cut(s)	91, 210
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	3 cut(s)	97, 193, 449
BsgI	GTGCAG	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	955
BsiSI	CCGG	2 cut(s)	9, 745
BslFI	GGGAC	2 cut(s)	79, 770
BsmAI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BsmFI	GGGAC	2 cut(s)	79, 770
Bso31I	GGTCTC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	1025
Bsp1286I	GDGCHC	1 cut(s)	955
Bsp143I	GATC	1 cut(s)	355
Bsp1720I	GCTNAGC	1 cut(s)	740
BspACI	CCGC	5 cut(s)	190, 628, 667, 754, 859
BspCNI	CTCAG	2 cut(s)	39, 939
BspLI	GGNNCC	1 cut(s)	7
BspQI	GCTCTTC	1 cut(s)	960
BspT104I	TTCGAA	1 cut(s)	1025
BspTI	CTTAAG	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	348
BsrBI	CCGCTC	2 cut(s)	628, 859
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	2 cut(s)	91, 210
BssMI	GATC	1 cut(s)	355
Bst4CI	ACNGT	3 cut(s)	330, 799, 882
Bst6I	CTCTTC	3 cut(s)	9, 927, 960
BstAFI	CTTAAG	1 cut(s)	458
BstBAI	YACGTR	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	1025
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	3 cut(s)	47, 740, 947
BstF5I	GGATG	3 cut(s)	109, 344, 585
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 272, 856, 1019
BstNSI	RCATGY	2 cut(s)	279, 604
BstSCI	CCNGG	1 cut(s)	744
BstV1I	GCAGC	3 cut(s)	97, 193, 449
BstV2I	GAAGAC	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	109, 344, 585
BtsIMutI	CAGTG	3 cut(s)	326, 454, 795
Cac8I	GCNNGC	1 cut(s)	407
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	324, 642, 800
CviAII	CATG	5 cut(s)	59, 276, 601, 983, 988
CviQI	GTAC	3 cut(s)	324, 642, 800
DdeI	CTNAG	3 cut(s)	47, 740, 947
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	763
Eam1104I	CTCTTC	3 cut(s)	9, 927, 960
Eam1105I	GACNNNNNGTC	1 cut(s)	763
EarI	CTCTTC	3 cut(s)	9, 927, 960
EciI	GGCGGA	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	348
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	100
FaeI	CATG	5 cut(s)	62, 279, 604, 986, 991
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	2 cut(s)	79, 770
FatI	CATG	5 cut(s)	58, 275, 600, 982, 987
FauI	CCCGC	1 cut(s)	747
FauNDI	CATATG	1 cut(s)	778
Fnu4HI	GCNGC	5 cut(s)	86, 207, 438, 668, 860
FokI	GGATG	3 cut(s)	116, 351, 572
Fsp4HI	GCNGC	5 cut(s)	86, 207, 438, 668, 860
FspBI	CTAG	3 cut(s)	497, 638, 863
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	5 cut(s)	86, 207, 438, 668, 860
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	91
HapII	CCGG	2 cut(s)	9, 745
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	62, 279, 604, 986, 991
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	2 cut(s)	31, 119
HinfI	GANTC	5 cut(s)	161, 386, 416, 521, 764
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	2 cut(s)	9, 745
HphI	GGTGA	3 cut(s)	760, 902, 1018
Hpy166II	GTNNAC	3 cut(s)	219, 326, 452
Hpy188I	TCNGA	5 cut(s)	154, 295, 348, 526, 823
Hpy188III	TCNNGA	4 cut(s)	377, 563, 692, 959
Hpy8I	GTNNAC	3 cut(s)	219, 326, 452
HpyAV	CCTTC	3 cut(s)	290, 535, 541
HpyCH4III	ACNGT	3 cut(s)	330, 799, 882
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	112, 437, 469, 869, 1002
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 272, 856, 1019
HpyF3I	CTNAG	3 cut(s)	47, 740, 947
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	62, 279, 604, 986, 991
HspAI	GCGC	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	960
LmnI	GCTCC	4 cut(s)	5, 82, 625, 736
Lsp1109I	GCAGC	3 cut(s)	97, 193, 449
LweI	GCATC	2 cut(s)	291, 424
MaeI	CTAG	3 cut(s)	497, 638, 863
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	2 cut(s)	475, 550
MalI	GATC	1 cut(s)	357
MbiI	CCGCTC	2 cut(s)	628, 859
MboI	GATC	1 cut(s)	355
MboII	GAAGA	8 cut(s)	26, 170, 354, 381, 395, 578, 944, 947
MfeI	CAATTG	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	955
MluCI	AATT	5 cut(s)	173, 372, 393, 570, 591
MlyI	GAGTC	3 cut(s)	155, 410, 773
MmeI	TCCRAC	1 cut(s)	594
MseI	TTAA	5 cut(s)	198, 218, 459, 501, 573
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	206
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	2 cut(s)	9, 745
MspR9I	CCNGG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	393
MwoI	GCNNNNNNNGC	4 cut(s)	118, 272, 856, 1019
NciI	CCSGG	1 cut(s)	746
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	62, 279, 604, 986, 991
NlaIV	GGNNCC	1 cut(s)	7
NspI	RCATGY	2 cut(s)	279, 604
NspV	TTCGAA	1 cut(s)	1025
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	960
PfeI	GAWTC	2 cut(s)	386, 521
PkrI	GCNGC	5 cut(s)	87, 208, 439, 669, 861
PleI	GAGTC	3 cut(s)	155, 410, 772
PmaCI	CACGTG	1 cut(s)	100
PmlI	CACGTG	1 cut(s)	100
PpsI	GAGTC	3 cut(s)	155, 410, 772
Ppu21I	YACGTR	1 cut(s)	100
PscI	ACATGT	1 cut(s)	600
PspCI	CACGTG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	3 cut(s)	325, 643, 801
RsaNI	GTAC	3 cut(s)	324, 642, 800
RseI	CAYNNNNRTG	1 cut(s)	102
SapI	GCTCTTC	1 cut(s)	960
SaqAI	TTAA	5 cut(s)	198, 218, 459, 501, 573
SatI	GCNGC	5 cut(s)	86, 207, 438, 668, 860
Sau3AI	GATC	1 cut(s)	355
SchI	GAGTC	3 cut(s)	155, 410, 773
ScrFI	CCNGG	1 cut(s)	746
SduI	GDGCHC	1 cut(s)	955
SfaNI	GCATC	2 cut(s)	291, 424
SfuI	TTCGAA	1 cut(s)	1025
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	173, 372, 393, 570, 591
SsiI	CCGC	5 cut(s)	190, 628, 667, 754, 859
SspMI	CTAG	3 cut(s)	497, 638, 863
StyD4I	CCNGG	1 cut(s)	744
TaaI	ACNGT	3 cut(s)	330, 799, 882
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	1025
TasI	AATT	5 cut(s)	173, 372, 393, 570, 591
TauI	GCSGC	2 cut(s)	670, 862
TfiI	GAWTC	2 cut(s)	386, 521
Tru1I	TTAA	5 cut(s)	198, 218, 459, 501, 573
Tru9I	TTAA	5 cut(s)	198, 218, 459, 501, 573
TscAI	CASTG	3 cut(s)	333, 454, 802
TseI	GCWGC	3 cut(s)	85, 206, 437
TspDTI	ATGAA	8 cut(s)	75, 171, 396, 441, 675, 744, 1004, 1008
TspRI	CASTG	3 cut(s)	333, 454, 802
Vha464I	CTTAAG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	372
XceI	RCATGY	2 cut(s)	279, 604
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	3 cut(s)	497, 638, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.