Rorug02G0080800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006480
Physical Location & Seq
Reverse (-)
6511438 .. 6512067
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0080800.1

Sequence Viewer

Length: 444 bp
ATGGCTGGCGATGATCTGCGTATGAAACTCTTGTACCTTGAGAACAGAGTTGGACTGGCAAGGTACCTGTTCCCCATGGAAGCAAAGATTGTAATGGATATTACTCAACTTGATGAAACTTCAGCGTTTCCATTAGCCTGCCTGATCCCGAATAATCTTGCCGGTTCCCAGAGAACAACTGTGGACTTGAACGAGGCACCCTTCAAGATTAAGGAAGAACACCTTGCCAGACTAAGAGCACTGTGCCGATCTACGGAAATTGGGAAACGGTTCTTTCCTCGTTGTTCAGAAGTACTGAACAAGATCATGGATGGTGATGAAGTGTCACAGCTTACATACACACGGAATGACACTCCAGAAATAAGGCTCTCAAAGAGAAAAAGGTACATGGAAATCCAAGAAGTACTAAGTAAGGCTTTTGATGAAGATAACACAGGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.92

Weight (kDa)

5.93

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_like_C PF12313 1 - 145 1.3e-59 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 63
AccB1I GGYRCC 2 cut(s) 63, 196
AclWI GGATC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 5 cut(s) 35, 65, 294, 386, 405
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 2 cut(s) 190, 205
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw21I GWGCWC 1 cut(s) 241
AlwI GGATC 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 17, 50
BanI GGYRCC 2 cut(s) 63, 196
Bbv12I GWGCWC 1 cut(s) 241
BccI CCATC 1 cut(s) 305
BmcAI AGTACT 2 cut(s) 294, 405
BmiI GGNNCC 3 cut(s) 65, 166, 198
BpmI CTGGAG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 1 cut(s) 60
BshNI GGYRCC 2 cut(s) 63, 196
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 4 cut(s) 13, 144, 248, 303
Bsp19I CCATGG 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 65, 166, 198
BspPI GGATC 1 cut(s) 139
BspT107I GGYRCC 2 cut(s) 63, 196
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 4 cut(s) 13, 144, 248, 303
BssT1I CCWWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 181, 243, 270
BstC8I GCNNGC 2 cut(s) 7, 139
BstDEI CTNAG 2 cut(s) 233, 407
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 4 cut(s) 16, 147, 251, 306
BstMBI GATC 4 cut(s) 13, 144, 248, 303
BtgI CCRYGG 1 cut(s) 75
BtgZI GCGATG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 2 cut(s) 7, 139
Cfr10I RCCGGY 1 cut(s) 161
Csp6I GTAC 5 cut(s) 34, 64, 293, 385, 404
CviAII CATG 3 cut(s) 76, 307, 388
CviJI RGCY 5 cut(s) 5, 137, 331, 367, 416
CviKI_1 RGCY 5 cut(s) 5, 137, 331, 367, 416
CviQI GTAC 5 cut(s) 34, 64, 293, 385, 404
DdeI CTNAG 2 cut(s) 233, 407
DpnI GATC 4 cut(s) 15, 146, 250, 305
DpnII GATC 4 cut(s) 13, 144, 248, 303
Eco130I CCWWGG 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 3 cut(s) 79, 310, 391
FaiI YATR 5 cut(s) 23, 77, 308, 337, 389
FalI AAGNNNNNCTT 4 cut(s) 207, 239, 400, 432
FatI CATG 3 cut(s) 75, 306, 387
FokI GGATG 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 339
HapII CCGG 1 cut(s) 162
Hin1II CATG 3 cut(s) 79, 310, 391
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 3 cut(s) 148, 205, 356
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 3 cut(s) 181, 243, 270
HpyF3I CTNAG 2 cut(s) 233, 407
Hsp92II CATG 3 cut(s) 79, 310, 391
KpnI GGTACC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 13, 144, 248, 303
LpnPI CCDG 9 cut(s) 41, 80, 151, 155, 175, 182, 241, 369, 420
MaeIII GTNAC 1 cut(s) 324
MalI GATC 4 cut(s) 15, 146, 250, 305
MboI GATC 4 cut(s) 13, 144, 248, 303
MboII GAAGA 2 cut(s) 227, 437
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 2 cut(s) 258, 439
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 187, 288
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 1 cut(s) 210
MspI CCGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 75
NdeII GATC 4 cut(s) 13, 144, 248, 303
NlaIII CATG 3 cut(s) 79, 310, 391
NlaIV GGNNCC 3 cut(s) 65, 166, 198
NmuCI GTSAC 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 269
PspN4I GGNNCC 3 cut(s) 65, 166, 198
RsaI GTAC 5 cut(s) 35, 65, 294, 386, 405
RsaNI GTAC 5 cut(s) 34, 64, 293, 385, 404
SaqAI TTAA 1 cut(s) 210
Sau3AI GATC 4 cut(s) 13, 144, 248, 303
ScaI AGTACT 2 cut(s) 294, 405
SduI GDGCHC 1 cut(s) 241
SetI ASST 6 cut(s) 39, 65, 69, 225, 333, 386
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
Sse9I AATT 2 cut(s) 258, 439
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 3 cut(s) 181, 243, 270
TasI AATT 2 cut(s) 258, 439
TatI WGTACW 2 cut(s) 292, 403
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 324
Tsp45I GTSAC 1 cut(s) 324
TspDTI ATGAA 4 cut(s) 38, 129, 333, 438
TspGWI ACGGA 2 cut(s) 269, 358
TspRI CASTG 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 269
ZrmI AGTACT 2 cut(s) 294, 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.