Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Forward (+)

6539838 .. 6542945

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11960.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAGCCGGAGAAGAGTATGACTTGTCGTCCTTGAAGTCTCAACTAAACCAAACACATGAAATGTGGAAGCTGGAGATGGAGCAGCGCCAGTCCCAGGTGGATGTGTTACAACAAAAGCTTATAGAGGTAAAGGCTTGTATAGAGGGGTCTGATGAAGATTCAAAAAAGGAATTAGAGGTTCTTTGGCGGAGAGTTAAGACGGCTGCTAGTTTGTTAACATACTTGAAATCAAAAGCAAGAATAATGGCTGTTCCTCATTTAGCACATACTGCATGTGGCATCAAACAATCAGAAGGACTGGGGATTGTTGATAAAAACGGTACACCGTTGTCTGGATGGTCTCGGAATGTTGATCTTTCTTCCTTTGATATTCCGGATGAAGATTCTTCAATTGGGACTGGGAAGCAACGGGAAACTCTTGATGAACAAGATGCAGCTTATATTGGTGAACTGCTCAAGTCTGTGCAGATGGTTACAGATGTAATGGAAGCTCTAGTCAAGAGAGCTATATTGGCAGAAGCTGAAACTGCAGTTGAGAAGAAGAAGGTAACTTTTGGTCAGGAAGAAATCAAGAAAAAGTCCATCCAGATTGAGAACATGTCTATGAAATTAGAGGAGATGGAGCAGTTTGCGCTAGGTACAAACGGTATTCTAAATGAAATGCGGCAGAGAGTTGAGGATTTGGTTCTAGAGACATCCATACAGCGGGAACGAGCCACAGAAAATGAGCAGGAGCTTTGCCGGGTGAAGCGGGACTTTGAGTCTCTAAAATCGTATGTGAGCAGTCTCATCACTGTACGAGAAACATTGCTTTCATCAGAGAAGCAGTTTCAAACTATTGAGAGGCTTGTCGCAAAAACAACACAGTTAGAGGGTGAGAAAACACAGAAAGAGGTAGAAGTTCAGAAACTTATGGAAGAGAATGTAAGGCTGAGTGCTCTTCTTGACAAGAAAGAAGCACAACTTCATGCCATGAATGAACAATGCAAGGTGATGGCTTTGAGTGCTTCGAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

341

Amino Acids

38.49

Weight (kDa)

5.15

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	4 cut(s)	190, 667, 709, 754
AfaI	GTAC	3 cut(s)	325, 643, 801
AfiI	CCNNNNNNNGG	3 cut(s)	97, 335, 708
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	5 cut(s)	37, 165, 229, 393, 836
AhdI	GACNNNNNGTC	2 cut(s)	28, 763
AjnI	CCWGG	1 cut(s)	96
AluBI	AGCT	7 cut(s)	73, 121, 440, 494, 509, 524, 739
AluI	AGCT	7 cut(s)	73, 121, 440, 494, 509, 524, 739
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	5 cut(s)	45, 348, 689, 771, 794
AlwNI	CAGNNNCTG	1 cut(s)	524
Aor13HI	TCCGGA	1 cut(s)	376
ApeKI	GCWGC	4 cut(s)	5, 85, 206, 437
AspLEI	GCGC	2 cut(s)	90, 637
AsuC2I	CCSGG	1 cut(s)	746
AsuHPI	GGTGA	4 cut(s)	461, 760, 890, 1006
AsuII	TTCGAA	1 cut(s)	1013
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	4 cut(s)	17, 97, 193, 449
BccI	CCATC	6 cut(s)	73, 333, 466, 593, 616, 991
BceAI	ACGGC	1 cut(s)	219
BciT130I	CCWGG	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	746
BcoDI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BfaI	CTAG	4 cut(s)	210, 497, 638, 692
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	91
BisI	GCNGC	5 cut(s)	6, 86, 207, 438, 668
BlsI	GCNGC	5 cut(s)	7, 87, 208, 439, 669
Bme1390I	CCNGG	2 cut(s)	98, 746
BmeRI	GACNNNNNGTC	2 cut(s)	28, 763
BmrFI	CCNGG	2 cut(s)	98, 746
BmrI	ACTGGG	2 cut(s)	311, 411
BmsI	GCATC	2 cut(s)	291, 424
BmuI	ACTGGG	2 cut(s)	311, 411
BpmI	CTGGAG	1 cut(s)	95
Bpu14I	TTCGAA	1 cut(s)	1013
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	746
BsaI	GGTCTC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 335, 708
Bse1I	ACTGG	3 cut(s)	91, 306, 406
Bse3DI	GCAATG	1 cut(s)	809
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	98
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	5 cut(s)	109, 344, 385, 585, 698
BseLI	CCNNNNNNNGG	3 cut(s)	97, 335, 708
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	1 cut(s)	926
BseNI	ACTGG	3 cut(s)	91, 306, 406
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	4 cut(s)	17, 97, 193, 449
BsgI	GTGCAG	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	943
BsiSI	CCGG	3 cut(s)	9, 377, 745
BslFI	GGGAC	3 cut(s)	79, 412, 770
BslI	CCNNNNNNNGG	3 cut(s)	97, 335, 708
BsmAI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BsmFI	GGGAC	3 cut(s)	79, 412, 770
Bso31I	GGTCTC	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	1013
Bsp1286I	GDGCHC	1 cut(s)	943
Bsp13I	TCCGGA	1 cut(s)	376
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	4 cut(s)	190, 667, 709, 754
BspCNI	CTCAG	1 cut(s)	927
BspEI	TCCGGA	1 cut(s)	376
BspMAI	CTGCAG	1 cut(s)	535
BspQI	GCTCTTC	1 cut(s)	948
BspT104I	TTCGAA	1 cut(s)	1013
BspTNI	GGTCTC	1 cut(s)	348
BsrDI	GCAATG	1 cut(s)	809
BsrI	ACTGG	3 cut(s)	91, 306, 406
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	5 cut(s)	323, 330, 650, 799, 870
Bst6I	CTCTTC	3 cut(s)	9, 915, 948
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstBI	TTCGAA	1 cut(s)	1013
BstDEI	CTNAG	1 cut(s)	935
BstF5I	GGATG	5 cut(s)	109, 344, 385, 585, 698
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	2 cut(s)	90, 637
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	5 cut(s)	45, 348, 689, 771, 794
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 515, 530, 634, 1007
BstNI	CCWGG	1 cut(s)	98
BstNSI	RCATGY	2 cut(s)	279, 604
BstSCI	CCNGG	2 cut(s)	96, 744
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	4 cut(s)	17, 97, 193, 449
BtsCI	GGATG	5 cut(s)	109, 344, 385, 585, 698
BtsIMutI	CAGTG	1 cut(s)	795
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	2 cut(s)	90, 637
Csp6I	GTAC	3 cut(s)	324, 642, 800
CviAII	CATG	5 cut(s)	59, 276, 601, 971, 976
CviQI	GTAC	3 cut(s)	324, 642, 800
DdeI	CTNAG	1 cut(s)	935
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DriI	GACNNNNNGTC	2 cut(s)	28, 763
Eam1104I	CTCTTC	3 cut(s)	9, 915, 948
Eam1105I	GACNNNNNGTC	2 cut(s)	28, 763
EarI	CTCTTC	3 cut(s)	9, 915, 948
EciI	GGCGGA	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	5 cut(s)	62, 279, 604, 974, 979
FalI	AAGNNNNNCTT	4 cut(s)	743, 775, 951, 983
FaqI	GGGAC	3 cut(s)	79, 412, 770
FatI	CATG	5 cut(s)	58, 275, 600, 970, 975
FauI	CCCGC	2 cut(s)	702, 747
Fnu4HI	GCNGC	5 cut(s)	6, 86, 207, 438, 668
FokI	GGATG	5 cut(s)	116, 351, 392, 572, 685
Fsp4HI	GCNGC	5 cut(s)	6, 86, 207, 438, 668
FspBI	CTAG	4 cut(s)	210, 497, 638, 692
GlaI	GCGC	2 cut(s)	89, 636
GluI	GCNGC	5 cut(s)	6, 86, 207, 438, 668
GsuI	CTGGAG	1 cut(s)	95
HaeII	RGCGCY	1 cut(s)	91
HapII	CCGG	3 cut(s)	9, 377, 745
HhaI	GCGC	2 cut(s)	90, 637
Hin1II	CATG	5 cut(s)	62, 279, 604, 974, 979
Hin6I	GCGC	2 cut(s)	88, 635
HinP1I	GCGC	2 cut(s)	88, 635
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	3 cut(s)	161, 386, 764
HpaI	GTTAAC	1 cut(s)	219
HpaII	CCGG	3 cut(s)	9, 377, 745
HphI	GGTGA	4 cut(s)	461, 760, 890, 1006
Hpy166II	GTNNAC	3 cut(s)	219, 326, 452
Hpy188I	TCNGA	5 cut(s)	154, 295, 348, 823, 909
Hpy188III	TCNNGA	9 cut(s)	336, 377, 422, 502, 563, 574, 589, 692, 947
Hpy8I	GTNNAC	3 cut(s)	219, 326, 452
HpyAV	CCTTC	2 cut(s)	290, 541
HpyCH4III	ACNGT	5 cut(s)	323, 330, 650, 799, 870
HpyCH4V	TGCA	5 cut(s)	275, 437, 469, 533, 990
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 515, 530, 634, 1007
HpyF3I	CTNAG	1 cut(s)	935
Hsp92II	CATG	5 cut(s)	62, 279, 604, 974, 979
HspAI	GCGC	2 cut(s)	88, 635
Kpn2I	TCCGGA	1 cut(s)	376
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	948
LmnI	GCTCC	3 cut(s)	82, 625, 736
Lsp1109I	GCAGC	4 cut(s)	17, 97, 193, 449
LweI	GCATC	2 cut(s)	291, 424
MaeI	CTAG	4 cut(s)	210, 497, 638, 692
MaeIII	GTNAC	3 cut(s)	108, 475, 550
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MfeI	CAATTG	1 cut(s)	393
MhlI	GDGCHC	1 cut(s)	943
MluCI	AATT	3 cut(s)	173, 393, 611
MlyI	GAGTC	1 cut(s)	773
MnlI	CCTC	9 cut(s)	121, 139, 172, 267, 610, 673, 840, 868, 889
MroI	TCCGGA	1 cut(s)	376
MseI	TTAA	2 cut(s)	198, 218
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	709
MspI	CCGG	3 cut(s)	9, 377, 745
MspR9I	CCNGG	2 cut(s)	98, 746
MunI	CAATTG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	5 cut(s)	272, 515, 530, 634, 1007
NciI	CCSGG	1 cut(s)	746
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	62, 279, 604, 974, 979
NspI	RCATGY	2 cut(s)	279, 604
NspV	TTCGAA	1 cut(s)	1013
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	948
PfeI	GAWTC	2 cut(s)	161, 386
PkrI	GCNGC	5 cut(s)	7, 87, 208, 439, 669
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
PscI	ACATGT	1 cut(s)	600
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	535
PstNI	CAGNNNCTG	1 cut(s)	524
RsaI	GTAC	3 cut(s)	325, 643, 801
RsaNI	GTAC	3 cut(s)	324, 642, 800
RseI	CAYNNNNRTG	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	948
SaqAI	TTAA	2 cut(s)	198, 218
SatI	GCNGC	5 cut(s)	6, 86, 207, 438, 668
Sau3AI	GATC	1 cut(s)	355
SchI	GAGTC	1 cut(s)	773
ScrFI	CCNGG	2 cut(s)	98, 746
SduI	GDGCHC	1 cut(s)	943
SfaNI	GCATC	2 cut(s)	291, 424
SfcI	CTRYAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	1013
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	3 cut(s)	173, 393, 611
SsiI	CCGC	4 cut(s)	190, 667, 709, 754
SspMI	CTAG	4 cut(s)	210, 497, 638, 692
StyD4I	CCNGG	2 cut(s)	96, 744
TaaI	ACNGT	5 cut(s)	323, 330, 650, 799, 870
TaqI	TCGA	1 cut(s)	1013
TasI	AATT	3 cut(s)	173, 393, 611
TauI	GCSGC	1 cut(s)	670
TfiI	GAWTC	2 cut(s)	161, 386
Tru1I	TTAA	2 cut(s)	198, 218
Tru9I	TTAA	2 cut(s)	198, 218
TscAI	CASTG	1 cut(s)	802
TseI	GCWGC	4 cut(s)	5, 85, 206, 437
TspRI	CASTG	1 cut(s)	802
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	2 cut(s)	279, 604
XspI	CTAG	4 cut(s)	210, 497, 638, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.