Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006480

Physical Location & Seq

Genomic Coordinates Forward (+)

15739039 .. 15740844

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCAGCAGAGGAAGATGTTGACTTGTCAACCTTGAAGTCTCAGCTGGGTCAAACACATGAACCATGGAAGCAGGAGATAGAACAGCGCCATTCCCAAGTAGATGTATTACAAACAAAGCTTATGGAGGTAAAGCTTTGTATAGAGGGGTCAAAGGAAGATTCCAAAAAGGAACTGGAGATTCTTTGGCGGAGAGTTAAAACTACTGCAACGGTGTTAACATACTTGAAATCAAAATCAAGAGTAATGGCTGTTCCTCATTTAGCACATACATCATGTGGCATCAAACAATTAGAAGGGGTGGGCCTTGTTGATAAAAATGGTACACCATTGTCTGGTTGGTCTAGGAATGTTGATCTTACTTCCTTTGATAGTCCAGATGAAGAGACTTGGGTTGGGATTAGCAACCAGCATGGTCCTCTGGATGAACAAGATGCGGCTTATATTGGTGAACTACTTAAATCTGTTCAGATGGTTACGGATGTAATGGAAGCTCTTGTGAAGAGAGTTTTACTGGCAGAATCTGAAACTGCAATTGAGAAGGAGAAGGTGACTTTTGGTCAGGAAGAAATTAAAAAAAAGTCGGTTCAAATTGAGAACATGTCTGTGAAGCTAGAGGAGATGGAACACTTTGCACTAGGTACAAATGGTATTTTAAATGAAATGCGGCAGAGAGTTGAGGATTTGGTTGAAGAAACAACTAGGCAGAGGCTACGAGCTGCAGAAAATGAACAGGAGCTTTGCCGTGTCAAGCGGGACTTTGAGTCTCTGAAATCATATGTCAGCAGTCTTATAACTGTACGAGAAACTCTGCTTTCATCAGAGAAACAGTTTCAAACTATAGAGAGACTGTTTGAGCGGCTCGTTGCGAAAACAACACAGTTAGAGGGTGAGAAAGTCCAGAAAGAGACGGAAGTCCAGAAACTTATGGAAGAAAATGTGAAGCTGAGCGCTCTTCTTGACAAGAAAGAGGCCCAACTTCTGGCCATGAATGAACAATGCAAGGTGATGGCTTTGAGTGCCTCGAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

39.11

Weight (kDa)

5.2

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17990 AT2G17990 AT2G17990
fragaria_vesca	FvH4_1g11960 FvH4_1g11960
malus_domestica	MD02G1133400.v1.1 MD15G1246600.v1.1
prunus_persica	Prupe.7G167200_v2.0.a1 Prupe.7G167200_v2.0.a1
pyrus_communis	pycom02g10510 pycom02g10520 pycom15g21700
rosa_chinensis	RchiOBHm_Chr2g0099581
rosa_laevigata	RLG00000016893
rosa_multiflora	Rmu_co8434585.1_g000001 Rmu_sc0005120.1_g000004
rosa_roxburghii	Rroxscaffold_2G00142960
rosa_rugosa	Rorug02G0080800 Rorug02G0080900 Rorug02G0081000 Rorug02G0081100
rosa_samantha	Rh2AG130700 Rh2BG133800 Rh2CG134600 Rh2DG135000
rosa_wichuraiana	Rw2G010090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
AccB7I	CCANNNNNTGG	2 cut(s)	335, 982
AccBSI	CCGCTC	1 cut(s)	859
AciI	CCGC	5 cut(s)	190, 437, 667, 754, 859
AcoI	YGGCCR	1 cut(s)	984
AfaI	GTAC	3 cut(s)	325, 643, 801
AfeI	AGCGCT	1 cut(s)	952
AfiI	CCNNNNNNNGG	2 cut(s)	335, 982
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	5 cut(s)	37, 229, 590, 692, 836
AhdI	GACNNNNNGTC	2 cut(s)	558, 763
AluBI	AGCT	8 cut(s)	46, 121, 136, 494, 613, 719, 739, 946
AluI	AGCT	8 cut(s)	46, 121, 136, 494, 613, 719, 739, 946
Alw26I	GTCTC	5 cut(s)	45, 380, 771, 841, 902
AlwNI	CAGNNNCTG	1 cut(s)	524
Aor51HI	AGCGCT	1 cut(s)	952
AoxI	GGCC	3 cut(s)	304, 972, 984
ApeKI	GCWGC	2 cut(s)	5, 719
AspLEI	GCGC	2 cut(s)	90, 953
AspS9I	GGNCC	3 cut(s)	304, 416, 973
AsuHPI	GGTGA	4 cut(s)	461, 562, 902, 1018
AvaII	GGWCC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	986
BbvI	GCAGC	2 cut(s)	17, 706
BccI	CCATC	3 cut(s)	466, 616, 1003
BceAI	ACGGC	1 cut(s)	729
BcoDI	GTCTC	5 cut(s)	45, 380, 771, 841, 902
BfaI	CTAG	4 cut(s)	345, 614, 638, 702
BfmI	CTRYAG	2 cut(s)	720, 840
BfoI	RGCGCY	2 cut(s)	91, 954
BisI	GCNGC	5 cut(s)	6, 438, 668, 720, 860
BlpI	GCTNAGC	1 cut(s)	947
BlsI	GCNGC	5 cut(s)	7, 439, 669, 721, 861
Bme18I	GGWCC	1 cut(s)	416
BmeRI	GACNNNNNGTC	2 cut(s)	558, 763
BmgT120I	GGNCC	3 cut(s)	304, 416, 973
BmsI	GCATC	2 cut(s)	291, 424
BoxI	GACNNNNGTC	1 cut(s)	914
BpmI	CTGGAG	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	947
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 982
Bse1I	ACTGG	2 cut(s)	180, 519
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	430, 487
BseLI	CCNNNNNNNGG	2 cut(s)	335, 982
BseMII	CTCAG	2 cut(s)	56, 938
BseNI	ACTGG	2 cut(s)	180, 519
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	2 cut(s)	17, 706
BseYI	CCCAGC	1 cut(s)	46
BshFI	GGCC	3 cut(s)	306, 974, 986
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	2 cut(s)	335, 982
BsmAI	GTCTC	5 cut(s)	45, 380, 771, 841, 902
BsmBI	CGTCTC	1 cut(s)	902
BsmFI	GGGAC	1 cut(s)	770
BsnI	GGCC	3 cut(s)	306, 974, 986
Bsp143I	GATC	1 cut(s)	355
Bsp1720I	GCTNAGC	1 cut(s)	947
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	5 cut(s)	190, 437, 667, 754, 859
BspANI	GGCC	3 cut(s)	306, 974, 986
BspCNI	CTCAG	2 cut(s)	55, 939
BspMAI	CTGCAG	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	960
BsrBI	CCGCTC	1 cut(s)	859
BsrI	ACTGG	2 cut(s)	180, 519
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	355
BssT1I	CCWWGG	1 cut(s)	65
Bst4CI	ACNGT	5 cut(s)	214, 799, 831, 852, 882
Bst6I	CTCTTC	3 cut(s)	378, 497, 960
BstDEI	CTNAG	2 cut(s)	42, 947
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	430, 487
BstH2I	RGCGCY	2 cut(s)	91, 954
BstHHI	GCGC	2 cut(s)	90, 953
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	5 cut(s)	45, 380, 771, 841, 902
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	1019
BstNSI	RCATGY	1 cut(s)	604
BstPAI	GACNNNNGTC	1 cut(s)	914
BstSFI	CTRYAG	2 cut(s)	720, 840
BstV1I	GCAGC	2 cut(s)	17, 706
BsuRI	GGCC	3 cut(s)	306, 974, 986
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	430, 487
CaiI	CAGNNNCTG	1 cut(s)	524
CfoI	GCGC	2 cut(s)	90, 953
Cfr13I	GGNCC	3 cut(s)	304, 416, 973
Csp6I	GTAC	3 cut(s)	324, 642, 800
CviAII	CATG	6 cut(s)	59, 66, 276, 413, 601, 988
CviQI	GTAC	3 cut(s)	324, 642, 800
DdeI	CTNAG	2 cut(s)	42, 947
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DraI	TTTAAA	1 cut(s)	657
DriI	GACNNNNNGTC	2 cut(s)	558, 763
EaeI	YGGCCR	1 cut(s)	984
Eam1104I	CTCTTC	3 cut(s)	378, 497, 960
Eam1105I	GACNNNNNGTC	2 cut(s)	558, 763
EarI	CTCTTC	3 cut(s)	378, 497, 960
EciI	GGCGGA	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	65
Eco47I	GGWCC	1 cut(s)	416
Eco47III	AGCGCT	1 cut(s)	952
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	902
FaeI	CATG	6 cut(s)	62, 69, 279, 416, 604, 991
FalI	AAGNNNNNCTT	2 cut(s)	743, 775
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	6 cut(s)	58, 65, 275, 412, 600, 987
FauI	CCCGC	1 cut(s)	747
FauNDI	CATATG	1 cut(s)	778
Fnu4HI	GCNGC	5 cut(s)	6, 438, 668, 720, 860
FokI	GGATG	2 cut(s)	437, 494
Fsp4HI	GCNGC	5 cut(s)	6, 438, 668, 720, 860
FspBI	CTAG	4 cut(s)	345, 614, 638, 702
GlaI	GCGC	2 cut(s)	89, 952
GluI	GCNGC	5 cut(s)	6, 438, 668, 720, 860
GsaI	CCCAGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	197
HaeII	RGCGCY	2 cut(s)	91, 954
HaeIII	GGCC	3 cut(s)	306, 974, 986
HhaI	GCGC	2 cut(s)	90, 953
Hin1II	CATG	6 cut(s)	62, 69, 279, 416, 604, 991
Hin6I	GCGC	2 cut(s)	88, 951
HinP1I	GCGC	2 cut(s)	88, 951
HincII	GTYRAC	3 cut(s)	22, 30, 219
HindII	GTYRAC	3 cut(s)	22, 30, 219
HindIII	AAGCTT	2 cut(s)	119, 134
HinfI	GANTC	4 cut(s)	161, 181, 521, 764
HpaI	GTTAAC	1 cut(s)	219
HphI	GGTGA	4 cut(s)	461, 562, 902, 1018
Hpy166II	GTNNAC	5 cut(s)	22, 30, 219, 326, 452
Hpy188I	TCNGA	4 cut(s)	471, 526, 771, 823
Hpy188III	TCNNGA	7 cut(s)	240, 377, 422, 563, 901, 919, 959
Hpy8I	GTNNAC	5 cut(s)	22, 30, 219, 326, 452
HpyAV	CCTTC	3 cut(s)	290, 535, 541
HpyCH4III	ACNGT	5 cut(s)	214, 799, 831, 852, 882
HpyCH4V	TGCA	5 cut(s)	209, 533, 635, 722, 1002
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1019
HpyF3I	CTNAG	2 cut(s)	42, 947
Hsp92II	CATG	6 cut(s)	62, 69, 279, 416, 604, 991
HspAI	GCGC	2 cut(s)	88, 951
KspAI	GTTAAC	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	960
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	2 cut(s)	17, 706
LweI	GCATC	2 cut(s)	291, 424
MaeI	CTAG	4 cut(s)	345, 614, 638, 702
MaeIII	GTNAC	2 cut(s)	475, 550
MalI	GATC	1 cut(s)	357
MbiI	CCGCTC	1 cut(s)	859
MboI	GATC	1 cut(s)	355
MboII	GAAGA	8 cut(s)	26, 170, 395, 514, 578, 704, 944, 947
MfeI	CAATTG	1 cut(s)	534
MlsI	TGGCCA	1 cut(s)	986
MluCI	AATT	4 cut(s)	290, 534, 570, 591
MluNI	TGGCCA	1 cut(s)	986
MlyI	GAGTC	1 cut(s)	773
Mox20I	TGGCCA	1 cut(s)	986
MscI	TGGCCA	1 cut(s)	986
MseI	TTAA	5 cut(s)	198, 218, 459, 573, 656
MslI	CAYNNNNRTG	1 cut(s)	605
Msp20I	TGGCCA	1 cut(s)	986
MspA1I	CMGCKG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	534
MwoI	GCNNNNNNNGC	1 cut(s)	1019
NcoI	CCATGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	6 cut(s)	62, 69, 279, 416, 604, 991
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	604
PciI	ACATGT	1 cut(s)	600
PciSI	GCTCTTC	1 cut(s)	960
PfeI	GAWTC	3 cut(s)	161, 181, 521
PflMI	CCANNNNNTGG	2 cut(s)	335, 982
PkrI	GCNGC	5 cut(s)	7, 439, 669, 721, 861
PleI	GAGTC	1 cut(s)	772
PpsI	GAGTC	1 cut(s)	772
PscI	ACATGT	1 cut(s)	600
PshAI	GACNNNNGTC	1 cut(s)	914
PsiI	TTATAA	1 cut(s)	794
PspFI	CCCAGC	1 cut(s)	46
PspPI	GGNCC	3 cut(s)	304, 416, 973
PsrI	GAACNNNNNNTAC	2 cut(s)	237, 269
PstI	CTGCAG	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	46
RsaI	GTAC	3 cut(s)	325, 643, 801
RsaNI	GTAC	3 cut(s)	324, 642, 800
RseI	CAYNNNNRTG	1 cut(s)	605
SapI	GCTCTTC	1 cut(s)	960
SaqAI	TTAA	5 cut(s)	198, 218, 459, 573, 656
SatI	GCNGC	5 cut(s)	6, 438, 668, 720, 860
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	3 cut(s)	304, 416, 973
SchI	GAGTC	1 cut(s)	773
SfaNI	GCATC	2 cut(s)	291, 424
SfcI	CTRYAG	2 cut(s)	720, 840
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	605
Sse9I	AATT	4 cut(s)	290, 534, 570, 591
SsiI	CCGC	5 cut(s)	190, 437, 667, 754, 859
SspMI	CTAG	4 cut(s)	345, 614, 638, 702
StyI	CCWWGG	1 cut(s)	65
TaaI	ACNGT	5 cut(s)	214, 799, 831, 852, 882
TaqI	TCGA	1 cut(s)	1025
TasI	AATT	4 cut(s)	290, 534, 570, 591
TauI	GCSGC	3 cut(s)	440, 670, 862
TfiI	GAWTC	3 cut(s)	161, 181, 521
Tru1I	TTAA	5 cut(s)	198, 218, 459, 573, 656
Tru9I	TTAA	5 cut(s)	198, 218, 459, 573, 656
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	2 cut(s)	5, 719
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	8 cut(s)	75, 396, 441, 675, 744, 807, 1004, 1008
TspGWI	ACGGA	2 cut(s)	494, 926
Van91I	CCANNNNNTGG	2 cut(s)	335, 982
VpaK11BI	GGWCC	1 cut(s)	416
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	2 cut(s)	172, 336
XspI	CTAG	4 cut(s)	345, 614, 638, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.