AT2G18969

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012121
Physical Location & Seq
Reverse (-)
8229000 .. 8229574
575 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18969.1

Sequence Viewer

Length: 528 bp
ATGGAGAGGCAAATTATAAACAAGAGAAAGCGAGTCTTTTCTCTCCAACCAAACAAGAACCCTAAGGCAGTTTTCGCAAGAAGATACGTGAGTCACTTGGTTCCAGCTCTTAAAAAGATCAACATGAACAAATCCTCTTCAAAAACCAACAAACAAAGTTTAGAACAAACCGTGAAACATGAAGTAGACATGGCTTTCGCATTGTCTGCTCAAGAATTCGCGTGGAGCCGTTTCTTGCAACAGAAGCTATTATCTTCCCCTTATGATGATCCAATTAGCACTAGTAGTTCTCCTTCCGAGATTCTAGAAAGATCGAGCAAGAGACAAGGTGGAGAAAAACACCAAGACAGCGACGAAGAAGAAGAAGGAGGAGAGATCAAGAAGAGATTGAAGGAATTGCAGAAGCTTTTGCCAGGTGGAGAAGAGATGAACATGGAGGAGATTTTGAGTGAGATTGGAAGCTACATTGTATGTCTTGAATTGCAGATGATTGTTTTAAAATCTATTGTACAAGATAATACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.0

Weight (kDa)

8.57

Isoelectric Point (pI)

81.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 23 - 85 1.4e-26 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 17
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 221
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 215
AfaI GTAC 1 cut(s) 510
AgsI TTSAA 3 cut(s) 141, 391, 479
AhlI ACTAGT 1 cut(s) 281
AjnI CCWGG 1 cut(s) 412
AluBI AGCT 4 cut(s) 107, 247, 406, 462
AluI AGCT 4 cut(s) 107, 247, 406, 462
Alw26I GTCTC 1 cut(s) 316
AlwI GGATC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AxyI CCTNAGG 1 cut(s) 63
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BarI GAAGNNNNNNTAC 2 cut(s) 277, 309
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 316
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 2 cut(s) 282, 305
Bme1390I CCNGG 1 cut(s) 414
BmiI GGNNCC 2 cut(s) 102, 227
BmrFI CCNGG 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 63
BseBI CCWGG 1 cut(s) 414
BseRI GAGGAG 2 cut(s) 384, 452
Bsh1236I CGCG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 117, 268, 311, 375
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 102, 227
BspPI GGATC 1 cut(s) 263
BsrGI TGTACA 1 cut(s) 508
BssMI GATC 4 cut(s) 117, 268, 311, 375
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 3 cut(s) 142, 377, 417
BstAPI GCANNNNNTGC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 508
BstBAI YACGTR 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 4 cut(s) 120, 271, 314, 378
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 4 cut(s) 117, 268, 311, 375
BstMWI GCNNNNNNNGC 3 cut(s) 74, 206, 244
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 412
BstUI CGCG 1 cut(s) 221
Bsu36I CCTNAGG 1 cut(s) 63
Csp6I GTAC 1 cut(s) 509
CviAII CATG 4 cut(s) 124, 179, 190, 433
CviJI RGCY 6 cut(s) 107, 194, 228, 247, 406, 462
CviKI_1 RGCY 6 cut(s) 107, 194, 228, 247, 406, 462
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 1 cut(s) 63
DpnI GATC 4 cut(s) 119, 270, 313, 377
DpnII GATC 4 cut(s) 117, 268, 311, 375
DraI TTTAAA 1 cut(s) 498
Eam1104I CTCTTC 3 cut(s) 142, 377, 417
EarI CTCTTC 3 cut(s) 142, 377, 417
Eco81I CCTNAGG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 412
FaeI CATG 4 cut(s) 127, 182, 193, 436
FaiI YATR 7 cut(s) 17, 125, 180, 191, 264, 434, 472
FalI AAGNNNNNCTT 2 cut(s) 20, 52
FatI CATG 4 cut(s) 123, 178, 189, 432
FblI GTMKAC 1 cut(s) 186
FspBI CTAG 2 cut(s) 282, 305
Hin1II CATG 4 cut(s) 127, 182, 193, 436
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 33, 91, 301
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 298
Hpy188III TCNNGA 5 cut(s) 212, 305, 379, 476, 525
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 3 cut(s) 303, 359, 385
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 238, 400, 484
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 206, 244
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 4 cut(s) 127, 182, 193, 436
Kzo9I GATC 4 cut(s) 117, 268, 311, 375
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 3 cut(s) 117, 399, 426
MaeI CTAG 2 cut(s) 282, 305
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 92
MalI GATC 4 cut(s) 119, 270, 313, 377
MboI GATC 4 cut(s) 117, 268, 311, 375
MboII GAAGA 8 cut(s) 93, 129, 246, 368, 371, 374, 394, 434
MluCI AATT 5 cut(s) 12, 215, 273, 395, 479
MlyI GAGTC 2 cut(s) 42, 100
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 3 cut(s) 145, 362, 430
MseI TTAA 2 cut(s) 111, 497
MspR9I CCNGG 1 cut(s) 414
MvaI CCWGG 1 cut(s) 414
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 74, 206, 244
NdeII GATC 4 cut(s) 117, 268, 311, 375
NlaIII CATG 4 cut(s) 127, 182, 193, 436
NlaIV GGNNCC 2 cut(s) 102, 227
NmuCI GTSAC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 301
PleI GAGTC 2 cut(s) 41, 99
PpsI GAGTC 2 cut(s) 41, 99
Ppu21I YACGTR 1 cut(s) 88
PsiI TTATAA 1 cut(s) 17
Psp6I CCWGG 1 cut(s) 412
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 102, 227
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SaqAI TTAA 2 cut(s) 111, 497
Sau3AI GATC 4 cut(s) 117, 268, 311, 375
SchI GAGTC 2 cut(s) 42, 100
ScrFI CCNGG 1 cut(s) 414
SetI ASST 7 cut(s) 90, 109, 249, 331, 408, 418, 464
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 5 cut(s) 12, 215, 273, 395, 479
SspMI CTAG 2 cut(s) 282, 305
StyD4I CCNGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 314
TasI AATT 5 cut(s) 12, 215, 273, 395, 479
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 111, 497
Tru9I TTAA 2 cut(s) 111, 497
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 140, 195, 443
XapI RAATTY 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 282, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.