RLG00000009169

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012121
Physical Location & Seq
Reverse (-)
48008425 .. 48011845
3421 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009169

Sequence Viewer

Length: 1233 bp
ATGATGAGGCAAATGGGTAAACATCCGAAACGTGTTTACTCTCTGCAACCCAACAGATGGGTGCGTTCTTCTGTGTTTGCAAGAAGATATGTCAATTATTTGTTGCCAGCTCTGAAGAAGAACAAAGAAAACGAGGAGTGCTGTAACTCCGATATTCATGAGTTGGAGAAAATTGTTTGGTACCAAGTGAACATGGCAATGGTGCTGTCTGCATCAACCCAGCGCGAGTTTGCCTGGATGCGCGCTTTGAAACAGAAGCTCCAAACAAATTGTCTCAATGGTAAGAGCTTTCTGCTACCTCATCCTCGTGTCTCGAAGCCTTTGAGTTTTCGGCAAAACCCTAGCTGCAGTGCAAGTTATAAGAAGAAGAAGTACTGCTCCTCCAATATGCCTAGTACGGTGGGACCGCATTTCCGAGCAAGAACTTTAGCTATCACGGAAAATGCAAAGAAAGACGAAGAGGCAGAGATGACTAGCAGGAAGTTGGTATCACTAAGAAGGCTTTTACCAGGAGGGAATGAGATGGTTGACGATGAATTGCTGGAAGAAGTAGGAAGTTATGTAACTTGTCTCCAGCTGCAGGTGACCATTCTTCGCAAACCAACCAAAACAACAGGTGACAACATCAGACCACCCAAACTTAGGTTCCAAGAACATGGACCTGCCTACCACCGTGCCAAACTCCTCCGTCCTTACTGTCCTCCGTCGTCTAAAACCCAGATTTCGGCCAGCTTCACCAACACGCCTCTATCTGCCCAACAGGCCTCGATCTGCCTTAACCTAGAGCGACAACCAAGTCCCTCGCCAGCAACAAGCCATAAAACGCCTGCAACATCACACCAAGAACTTAGGGCAGCCATGTATCCACCAAGATCCTCTTCGCCATTATGCTCGATTCCAACAGCAGCAAAATACAAAAACCAAAACCAAATTCATAACTCCCCAAATAGATCCGATCAGATATGTGGGCTTTGGGATTGGGGGAATTTGAACCGTTTGATCACCGCCGCGACGACCTTGCTGCGCCATCACCACCACGACGAAACCTCGCTGCGTCATCACCGCCGCGACGACCTCAAGTTTCGTCTCTTCCACTTCAAAATTCTGGTCAAGCGCGGCGGAGTTCTTGGGACGGAGCGCGTACTATTTCAACACAAGGGTGGAGGAGTTGGAGTTTGGATGCGGTGGAGGAGGCGGTATAAGAGGGCGTGGTGGCCGGAATCTTGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

411

Amino Acids

47.33

Weight (kDa)

10.21

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 24 - 91 1.2e-22 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AarI CACCTGC 1 cut(s) 571
AasI GACNNNNNNGTC 1 cut(s) 795
Acc36I ACCTGC 2 cut(s) 571, 670
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 57
AccII CGCG 6 cut(s) 225, 243, 1010, 1068, 1116, 1140
AciI CCGC 9 cut(s) 407, 1005, 1008, 1063, 1066, 1116, 1119, 1183, 1195
AclWI GGATC 2 cut(s) 867, 945
AcoI YGGCCR 2 cut(s) 726, 1214
AcsI RAATTY 3 cut(s) 930, 985, 1101
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 4 cut(s) 182, 374, 397, 1143
AfiI CCNNNNNNNGG 4 cut(s) 57, 580, 642, 724
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 250, 991, 1099, 1151
AjnI CCWGG 2 cut(s) 233, 508
AjuI GAANNNNNNNTTGG 6 cut(s) 629, 661, 862, 894, 915, 947
AleI CACNNNNGTG 1 cut(s) 1158
AluBI AGCT 7 cut(s) 110, 259, 288, 345, 431, 577, 732
AluI AGCT 7 cut(s) 110, 259, 288, 345, 431, 577, 732
Alw26I GTCTC 4 cut(s) 278, 316, 575, 1091
AlwI GGATC 2 cut(s) 867, 945
AoxI GGCC 3 cut(s) 726, 762, 1214
ApeKI GCWGC 6 cut(s) 345, 577, 854, 905, 1021, 1051
ApoI RAATTY 3 cut(s) 930, 985, 1101
ArsI GACNNNNNNTTYG 4 cut(s) 256, 288, 1092, 1124
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 6 cut(s) 225, 243, 245, 1026, 1116, 1140
AspS9I GGNCC 2 cut(s) 404, 659
AsuHPI GGTGA 6 cut(s) 595, 629, 727, 994, 1022, 1052
AvaII GGWCC 2 cut(s) 404, 659
BanI GGYRCC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BauI CACGAG 1 cut(s) 306
BbvI GCAGC 6 cut(s) 332, 564, 866, 917, 1008, 1038
BccI CCATC 3 cut(s) 51, 517, 1035
BcgI CGANNNNNNTGC 4 cut(s) 1000, 1003, 1034, 1037
BciT130I CCWGG 2 cut(s) 235, 510
BciVI GTATCC 1 cut(s) 873
BclI TGATCA 1 cut(s) 999
BcoDI GTCTC 4 cut(s) 278, 316, 575, 1091
BfaI CTAG 4 cut(s) 342, 393, 474, 782
BfmI CTRYAG 2 cut(s) 346, 578
BfuAI ACCTGC 2 cut(s) 571, 670
BfuI GTATCC 1 cut(s) 873
BglI GCCNNNNNGGC 1 cut(s) 761
BisI GCNGC 9 cut(s) 346, 578, 855, 906, 1008, 1022, 1052, 1066, 1117
BlsI GCNGC 9 cut(s) 347, 579, 856, 907, 1009, 1023, 1053, 1067, 1118
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 2 cut(s) 235, 510
Bme18I GGWCC 2 cut(s) 404, 659
BmgT120I GGNCC 2 cut(s) 404, 659
BmiI GGNNCC 3 cut(s) 182, 405, 647
BmrFI CCNGG 2 cut(s) 235, 510
BmsI GCATC 3 cut(s) 221, 228, 1170
BpmI CTGGAG 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 1061
BsaXI ACNNNNNCTCC 6 cut(s) 243, 273, 365, 395, 1158, 1188
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 580, 642, 724
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 235, 510
BseGI GGATG 4 cut(s) 22, 243, 301, 1185
BseLI CCNNNNNNNGG 4 cut(s) 57, 580, 642, 724
BseMI GCAATG 1 cut(s) 204
BsePI GCGCGC 1 cut(s) 241
BseRI GAGGAG 5 cut(s) 149, 370, 674, 1179, 1204
BseXI GCAGC 6 cut(s) 332, 564, 866, 917, 1008, 1038
BseYI CCCAGC 1 cut(s) 219
Bsh1236I CGCG 6 cut(s) 225, 243, 1010, 1068, 1116, 1140
BshFI GGCC 3 cut(s) 728, 764, 1216
BshNI GGYRCC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 1217
BslFI GGGAC 3 cut(s) 417, 783, 1144
BslI CCNNNNNNNGG 4 cut(s) 57, 580, 642, 724
BsmAI GTCTC 4 cut(s) 278, 316, 575, 1091
BsmBI CGTCTC 1 cut(s) 1091
BsmFI GGGAC 3 cut(s) 417, 783, 1144
BsnI GGCC 3 cut(s) 728, 764, 1216
Bsp143I GATC 5 cut(s) 768, 872, 950, 955, 999
BspACI CCGC 9 cut(s) 407, 1005, 1008, 1063, 1066, 1116, 1119, 1183, 1195
BspANI GGCC 3 cut(s) 728, 764, 1216
BspFNI CGCG 6 cut(s) 225, 243, 1010, 1068, 1116, 1140
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 3 cut(s) 182, 405, 647
BspMAI CTGCAG 2 cut(s) 350, 582
BspMI ACCTGC 2 cut(s) 571, 670
BspPI GGATC 2 cut(s) 867, 945
BspT107I GGYRCC 1 cut(s) 180
BsrDI GCAATG 1 cut(s) 204
BssHII GCGCGC 1 cut(s) 241
BssMI GATC 5 cut(s) 768, 872, 950, 955, 999
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 235, 510
Bst4CI ACNGT 4 cut(s) 400, 674, 698, 995
Bst6I CTCTTC 3 cut(s) 453, 883, 1094
BstC8I GCNNGC 5 cut(s) 108, 243, 730, 807, 828
BstDEI CTNAG 3 cut(s) 494, 641, 848
BstEII GGTNACC 1 cut(s) 583
BstF5I GGATG 4 cut(s) 22, 243, 301, 1185
BstFNI CGCG 6 cut(s) 225, 243, 1010, 1068, 1116, 1140
BstHHI GCGC 6 cut(s) 225, 243, 245, 1026, 1116, 1140
BstKTI GATC 5 cut(s) 771, 875, 953, 958, 1002
BstMAI GTCTC 4 cut(s) 278, 316, 575, 1091
BstMBI GATC 5 cut(s) 768, 872, 950, 955, 999
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNI CCWGG 2 cut(s) 235, 510
BstPI GGTNACC 1 cut(s) 583
BstSCI CCNGG 2 cut(s) 233, 508
BstSFI CTRYAG 2 cut(s) 346, 578
BstUI CGCG 6 cut(s) 225, 243, 1010, 1068, 1116, 1140
BstV1I GCAGC 6 cut(s) 332, 564, 866, 917, 1008, 1038
BstX2I RGATCY 2 cut(s) 872, 950
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 2 cut(s) 872, 950
BsuI GTATCC 1 cut(s) 873
BsuRI GGCC 3 cut(s) 728, 764, 1216
BtsCI GGATG 4 cut(s) 22, 243, 301, 1185
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 2 cut(s) 571, 670
Cac8I GCNNGC 5 cut(s) 108, 243, 730, 807, 828
CciI TCATGA 1 cut(s) 157
CfoI GCGC 6 cut(s) 225, 243, 245, 1026, 1116, 1140
Cfr13I GGNCC 2 cut(s) 404, 659
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 4 cut(s) 181, 373, 396, 1142
CviAII CATG 4 cut(s) 158, 193, 656, 859
CviQI GTAC 4 cut(s) 181, 373, 396, 1142
DdeI CTNAG 3 cut(s) 494, 641, 848
DpnI GATC 5 cut(s) 770, 874, 952, 957, 1001
DpnII GATC 5 cut(s) 768, 872, 950, 955, 999
DrdI GACNNNNNNGTC 1 cut(s) 795
DseDI GACNNNNNNGTC 1 cut(s) 795
EaeI YGGCCR 2 cut(s) 726, 1214
Eam1104I CTCTTC 3 cut(s) 453, 883, 1094
EarI CTCTTC 3 cut(s) 453, 883, 1094
EciI GGCGGA 1 cut(s) 1134
Eco147I AGGCCT 1 cut(s) 764
Eco47I GGWCC 2 cut(s) 404, 659
Eco57I CTGAAG 1 cut(s) 134
Eco91I GGTNACC 1 cut(s) 583
EcoO65I GGTNACC 1 cut(s) 583
EcoRII CCWGG 2 cut(s) 233, 508
Esp3I CGTCTC 1 cut(s) 1091
FaeI CATG 4 cut(s) 161, 196, 659, 862
FalI AAGNNNNNCTT 2 cut(s) 862, 894
FaqI GGGAC 3 cut(s) 417, 783, 1144
FatI CATG 4 cut(s) 157, 192, 655, 858
FbaI TGATCA 1 cut(s) 999
Fnu4HI GCNGC 9 cut(s) 346, 578, 855, 906, 1008, 1022, 1052, 1066, 1117
FokI GGATG 4 cut(s) 9, 250, 288, 1192
Fsp4HI GCNGC 9 cut(s) 346, 578, 855, 906, 1008, 1022, 1052, 1066, 1117
FspBI CTAG 4 cut(s) 342, 393, 474, 782
GlaI GCGC 6 cut(s) 224, 242, 244, 1025, 1115, 1139
GluI GCNGC 9 cut(s) 346, 578, 855, 906, 1008, 1022, 1052, 1066, 1117
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 557
HaeIII GGCC 3 cut(s) 728, 764, 1216
HapII CCGG 1 cut(s) 1217
HgaI GACGC 1 cut(s) 1043
HhaI GCGC 6 cut(s) 225, 243, 245, 1026, 1116, 1140
Hin1II CATG 4 cut(s) 161, 196, 659, 862
Hin6I GCGC 6 cut(s) 223, 241, 243, 1024, 1114, 1138
HinP1I GCGC 6 cut(s) 223, 241, 243, 1024, 1114, 1138
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 2 cut(s) 895, 1220
HpaII CCGG 1 cut(s) 1217
HphI GGTGA 6 cut(s) 595, 629, 727, 994, 1022, 1052
Hpy166II GTNNAC 4 cut(s) 20, 37, 190, 529
Hpy188I TCNGA 7 cut(s) 27, 114, 151, 416, 629, 955, 960
Hpy188III TCNNGA 2 cut(s) 158, 313
Hpy8I GTNNAC 4 cut(s) 20, 37, 190, 529
Hpy99I CGWCG 4 cut(s) 709, 1015, 1043, 1073
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 4 cut(s) 400, 674, 698, 995
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 8 cut(s) 46, 80, 212, 348, 353, 446, 580, 830
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 3 cut(s) 494, 641, 848
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 4 cut(s) 161, 196, 659, 862
HspAI GCGC 6 cut(s) 223, 241, 243, 1024, 1114, 1138
KpnI GGTACC 1 cut(s) 184
Ksp22I TGATCA 1 cut(s) 999
Kzo9I GATC 5 cut(s) 768, 872, 950, 955, 999
LmnI GCTCC 3 cut(s) 264, 383, 1135
Lsp1109I GCAGC 6 cut(s) 332, 564, 866, 917, 1008, 1038
LweI GCATC 3 cut(s) 221, 228, 1170
MaeI CTAG 4 cut(s) 342, 393, 474, 782
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 4 cut(s) 143, 562, 583, 617
MalI GATC 5 cut(s) 770, 874, 952, 957, 1001
MboI GATC 5 cut(s) 768, 872, 950, 955, 999
MflI RGATCY 2 cut(s) 872, 950
MluCI AATT 7 cut(s) 94, 171, 268, 536, 930, 985, 1101
MmeI TCCRAC 3 cut(s) 144, 923, 1150
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 3 cut(s) 197, 306, 1158
MspA1I CMGCKG 1 cut(s) 577
MspI CCGG 1 cut(s) 1217
MspR9I CCNGG 2 cut(s) 235, 510
MvaI CCWGG 2 cut(s) 235, 510
MvnI CGCG 6 cut(s) 225, 243, 1010, 1068, 1116, 1140
MwoI GCNNNNNNNGC 1 cut(s) 761
NdeII GATC 5 cut(s) 768, 872, 950, 955, 999
NlaIII CATG 4 cut(s) 161, 196, 659, 862
NlaIV GGNNCC 3 cut(s) 182, 405, 647
NmuCI GTSAC 2 cut(s) 583, 617
OliI CACNNNNGTG 1 cut(s) 1158
PagI TCATGA 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 571
PauI GCGCGC 1 cut(s) 241
PceI AGGCCT 1 cut(s) 764
PfeI GAWTC 2 cut(s) 895, 1220
PflMI CCANNNNNTGG 1 cut(s) 57
PkrI GCNGC 9 cut(s) 347, 579, 856, 907, 1009, 1023, 1053, 1067, 1118
PsiI TTATAA 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 233, 508
PspEI GGTNACC 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 2 cut(s) 233, 508
PspN4I GGNNCC 3 cut(s) 182, 405, 647
PspPI GGNCC 2 cut(s) 404, 659
PstI CTGCAG 2 cut(s) 350, 582
PsuI RGATCY 2 cut(s) 872, 950
PteI GCGCGC 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 577
RsaI GTAC 4 cut(s) 182, 374, 397, 1143
RsaNI GTAC 4 cut(s) 181, 373, 396, 1142
RseI CAYNNNNRTG 3 cut(s) 197, 306, 1158
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 9 cut(s) 346, 578, 855, 906, 1008, 1022, 1052, 1066, 1117
Sau3AI GATC 5 cut(s) 768, 872, 950, 955, 999
Sau96I GGNCC 2 cut(s) 404, 659
ScaI AGTACT 1 cut(s) 374
ScrFI CCNGG 2 cut(s) 235, 510
SfaNI GCATC 3 cut(s) 221, 228, 1170
SfcI CTRYAG 2 cut(s) 346, 578
SinI GGWCC 2 cut(s) 404, 659
SmiMI CAYNNNNRTG 3 cut(s) 197, 306, 1158
SmlI CTYRAG 1 cut(s) 1076
SmoI CTYRAG 1 cut(s) 1076
Sse9I AATT 7 cut(s) 94, 171, 268, 536, 930, 985, 1101
SseBI AGGCCT 1 cut(s) 764
SsiI CCGC 9 cut(s) 407, 1005, 1008, 1063, 1066, 1116, 1119, 1183, 1195
SspMI CTAG 4 cut(s) 342, 393, 474, 782
StuI AGGCCT 1 cut(s) 764
StyD4I CCNGG 2 cut(s) 233, 508
TaaI ACNGT 4 cut(s) 400, 674, 698, 995
TaiI ACGT 1 cut(s) 34
TaqI TCGA 3 cut(s) 314, 767, 893
TasI AATT 7 cut(s) 94, 171, 268, 536, 930, 985, 1101
TatI WGTACW 1 cut(s) 372
TauI GCSGC 3 cut(s) 1010, 1068, 1119
TfiI GAWTC 2 cut(s) 895, 1220
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 2 cut(s) 583, 617
TseI GCWGC 6 cut(s) 345, 577, 854, 905, 1021, 1051
Tsp45I GTSAC 2 cut(s) 583, 617
TspDTI ATGAA 3 cut(s) 146, 549, 923
TspGWI ACGGA 4 cut(s) 452, 677, 693, 1148
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 57
VpaK11BI GGWCC 2 cut(s) 404, 659
XapI RAATTY 3 cut(s) 930, 985, 1101
XspI CTAG 4 cut(s) 342, 393, 474, 782
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.