Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012121

Physical Location & Seq

Genomic Coordinates Forward (+)

5527005 .. 5527349

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCTCATAGAGTTTGGTACATACATAACTCTTCGGGTTGTATCGGAGCCCCGTCACGATTCTTCTGCTCTAACAATCCAAATAGTTGGGTTCAACAATGGCCCCCGATCGCTGAGCTCCAACTCCCCAAATAGATCCGATCAGATATATGGGCTTTGGGATTGGGGGAATTTGAACCGTTTGATCACCGCCGCGACGACCTTGCTGCGCCATCACCACCGCAACGAAACCTCGCTGCGTCATCACCGCTGCGACGACCTCGCTGCGTCATCACCGCTGCGACGACCTCGCTGCGTCATCACCGCTGCGACGACCTCGCCGCGTCATCACCGCCACCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

10.98

Isoelectric Point (pI)

62.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18969 AT4G30180
fragaria_vesca	FvH4_4g07800
prunus_persica	Prupe.1G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0400891
rosa_laevigata	RLG00000003757 RLG00000009169 RLG00000024970
rosa_multiflora	Rmu_sc0014690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272550 Rroxscaffold_5G00345790
rosa_rugosa	Rorug04G0026900
rosa_samantha	Rh4BG099800 Rh4CG113000 Rh4DG096800 Rh6DG346900 Rh7BG077700 Rh7DG290900
rosa_wichuraiana	Rw4G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	194, 322
AciI	CCGC	8 cut(s)	189, 192, 220, 247, 275, 303, 320, 331
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	169
AfaI	GTAC	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	94, 175
AluBI	AGCT	1 cut(s)	117
AluI	AGCT	1 cut(s)	117
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	7 cut(s)	205, 235, 249, 263, 277, 291, 305
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	6 cut(s)	178, 206, 236, 264, 292, 320
BanII	GRGCYC	2 cut(s)	51, 119
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	7 cut(s)	192, 222, 236, 250, 264, 278, 292
BccI	CCATC	1 cut(s)	219
BclI	TGATCA	1 cut(s)	183
BisI	GCNGC	9 cut(s)	192, 206, 236, 250, 264, 278, 292, 306, 320
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	9 cut(s)	193, 207, 237, 251, 265, 279, 293, 307, 321
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	48, 103
Bpu1102I	GCTNAGC	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	104
BseXI	GCAGC	7 cut(s)	192, 222, 236, 250, 264, 278, 292
Bsh1236I	CGCG	2 cut(s)	194, 322
Bsh1285I	CGRYCG	1 cut(s)	110
BshFI	GGCC	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	2 cut(s)	51, 119
Bsp143I	GATC	4 cut(s)	107, 134, 139, 183
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	8 cut(s)	189, 192, 220, 247, 275, 303, 320, 331
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	194, 322
BspLI	GGNNCC	2 cut(s)	48, 103
BspPI	GGATC	1 cut(s)	129
BssMI	GATC	4 cut(s)	107, 134, 139, 183
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	113
BstFNI	CGCG	2 cut(s)	194, 322
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	4 cut(s)	110, 137, 142, 186
BstMBI	GATC	4 cut(s)	107, 134, 139, 183
BstMCI	CGRYCG	1 cut(s)	110
BstUI	CGCG	2 cut(s)	194, 322
BstV1I	GCAGC	7 cut(s)	192, 222, 236, 250, 264, 278, 292
BstX2I	RGATCY	1 cut(s)	134
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	1 cut(s)	101
CseI	GACGC	4 cut(s)	227, 255, 283, 311
Csp6I	GTAC	1 cut(s)	18
CspCI	CAANNNNNGTGG	1 cut(s)	323
CviJI	RGCY	4 cut(s)	49, 102, 117, 154
CviKI_1	RGCY	4 cut(s)	49, 102, 117, 154
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	4 cut(s)	109, 136, 141, 185
DpnII	GATC	4 cut(s)	107, 134, 139, 183
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	51, 119
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoT38I	GRGCYC	2 cut(s)	51, 119
FaiI	YATR	5 cut(s)	8, 22, 26, 148, 150
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	9 cut(s)	192, 206, 236, 250, 264, 278, 292, 306, 320
FriOI	GRGCYC	2 cut(s)	51, 119
Fsp4HI	GCNGC	9 cut(s)	192, 206, 236, 250, 264, 278, 292, 306, 320
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	9 cut(s)	192, 206, 236, 250, 264, 278, 292, 306, 320
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	4 cut(s)	227, 255, 283, 311
HhaI	GCGC	1 cut(s)	210
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	59
HphI	GGTGA	6 cut(s)	178, 206, 236, 264, 292, 320
Hpy188I	TCNGA	3 cut(s)	46, 139, 144
Hpy188III	TCNNGA	1 cut(s)	56
Hpy99I	CGWCG	4 cut(s)	199, 257, 285, 313
HpyCH4III	ACNGT	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	208
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	107, 134, 139, 183
LmnI	GCTCC	2 cut(s)	46, 122
Lsp1109I	GCAGC	7 cut(s)	192, 222, 236, 250, 264, 278, 292
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	4 cut(s)	109, 136, 141, 185
MboI	GATC	4 cut(s)	107, 134, 139, 183
MboII	GAAGA	2 cut(s)	23, 54
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	51, 119
MluCI	AATT	1 cut(s)	169
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	241, 269, 297, 325
MspA1I	CMGCKG	3 cut(s)	249, 277, 305
MvnI	CGCG	2 cut(s)	194, 322
NdeII	GATC	4 cut(s)	107, 134, 139, 183
NlaIV	GGNNCC	2 cut(s)	48, 103
NmuCI	GTSAC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	59
PkrI	GCNGC	9 cut(s)	193, 207, 237, 251, 265, 279, 293, 307, 321
Ple19I	CGATCG	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	48, 103
PspPI	GGNCC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	134
PvuI	CGATCG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	119
SatI	GCNGC	9 cut(s)	192, 206, 236, 250, 264, 278, 292, 306, 320
Sau3AI	GATC	4 cut(s)	107, 134, 139, 183
Sau96I	GGNCC	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	51, 119
SetI	ASST	7 cut(s)	119, 203, 233, 261, 289, 317, 339
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	8 cut(s)	189, 192, 220, 247, 275, 303, 320, 331
SstI	GAGCTC	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	179
TasI	AATT	1 cut(s)	169
TauI	GCSGC	2 cut(s)	194, 322
TfiI	GAWTC	1 cut(s)	59
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	7 cut(s)	205, 235, 249, 263, 277, 291, 305
Tsp45I	GTSAC	1 cut(s)	53
XapI	RAATTY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.