RchiOBHm_Chr4g0400891

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012121
Physical Location & Seq
Forward (+)
18806617 .. 18807628
1012 bp
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UTR
Exon/CDS
Intron
PRQ37288

Sequence Viewer

Length: 633 bp
ATGGTGATGATGAGGCAAATGGGTAAACATCCGAAACGTGTTTACTCTCTGCAACCCAACAGATGGGTGCGCTCTTCTGTGTTTGCAAGAAGATATGTCAATTACTTATTGCCAGCTCTAAAGAAGAACAAAGAAAACGAGGAGTGCTGTAACTCTGATATTCATGAGTTGGAGAAAATTGTTGGGTACCAAGTGAACATGGCAATGGTGCTGTCTGCATCAACGCAGCGCGAGTTTGCCTGGATGCGCGCTTTGAAACAGAATCTCCAAACAAATTGTCTCAATGGTAAGAGCTTTCTGCTACCTCATCCTCGTGTTTCGAAGCCTTTGAGTTTTCTGCAAAACCCTAGCTGCAGTGCAAGTTATAAGAAGAAGAAGTACTGCTCCTCCAATATGCCTAGTACGGTGAGACCGCATTTCGGAGCAAGAACTTCAGCTATCAAGGAAAATGCAAAGAAAGACGAAGAGGCAGAGATGACTAGCAGGAAGTTGGTATCACTAAGAAGGCTTTTACCAGGAGGGAATGAGATGGTTGACGATGAATTGCTGGAAGAAGTAGGAAGTTATGTAACTTGTCTCCAGCTGCAGGTGACTATTCTTCGGTGTCTAGTGGGGATCGAACTCGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

24.06

Weight (kDa)

9.49

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 26 - 93 2.6e-23 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AarI CACCTGC 1 cut(s) 577
Acc36I ACCTGC 1 cut(s) 577
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 63
AccII CGCG 2 cut(s) 231, 249
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 3 cut(s) 188, 380, 403
AfiI CCNNNNNNNGG 3 cut(s) 63, 419, 586
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 239, 514
AluBI AGCT 5 cut(s) 116, 294, 351, 437, 583
AluI AGCT 5 cut(s) 116, 294, 351, 437, 583
Alw26I GTCTC 3 cut(s) 284, 403, 581
AlwI GGATC 1 cut(s) 623
ApeKI GCWGC 3 cut(s) 226, 351, 583
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp718I GGTACC 1 cut(s) 186
AspLEI GCGC 4 cut(s) 72, 231, 249, 251
AsuHPI GGTGA 3 cut(s) 16, 418, 601
AsuII TTCGAA 1 cut(s) 320
BanI GGYRCC 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BauI CACGAG 1 cut(s) 312
BbvI GCAGC 3 cut(s) 238, 338, 570
BccI CCATC 2 cut(s) 57, 523
BciT130I CCWGG 2 cut(s) 241, 516
BcoDI GTCTC 3 cut(s) 284, 403, 581
BfaI CTAG 4 cut(s) 348, 399, 480, 608
BfmI CTRYAG 2 cut(s) 352, 584
BfuAI ACCTGC 1 cut(s) 577
BisI GCNGC 3 cut(s) 227, 352, 584
BlsI GCNGC 3 cut(s) 228, 353, 585
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 241, 516
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 241, 516
BmsI GCATC 2 cut(s) 227, 234
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 320
BsaI GGTCTC 1 cut(s) 403
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 371, 401
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 419, 586
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 241, 516
BseGI GGATG 3 cut(s) 28, 249, 307
BseLI CCNNNNNNNGG 3 cut(s) 63, 419, 586
BseMI GCAATG 1 cut(s) 210
BsePI GCGCGC 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 155, 376
BseXI GCAGC 3 cut(s) 238, 338, 570
Bsh1236I CGCG 2 cut(s) 231, 249
BshNI GGYRCC 1 cut(s) 186
BslI CCNNNNNNNGG 3 cut(s) 63, 419, 586
BsmAI GTCTC 3 cut(s) 284, 403, 581
Bso31I GGTCTC 1 cut(s) 403
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 1 cut(s) 615
BspACI CCGC 1 cut(s) 413
BspFNI CGCG 2 cut(s) 231, 249
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 188
BspMAI CTGCAG 2 cut(s) 356, 588
BspMI ACCTGC 1 cut(s) 577
BspPI GGATC 1 cut(s) 623
BspQI GCTCTTC 1 cut(s) 79
BspT104I TTCGAA 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 210
BssHII GCGCGC 1 cut(s) 247
BssMI GATC 1 cut(s) 615
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst2UI CCWGG 2 cut(s) 241, 516
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 79, 459
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 114, 249
BstDEI CTNAG 1 cut(s) 500
BstF5I GGATG 3 cut(s) 28, 249, 307
BstFNI CGCG 2 cut(s) 231, 249
BstHHI GCGC 4 cut(s) 72, 231, 249, 251
BstKTI GATC 1 cut(s) 618
BstMAI GTCTC 3 cut(s) 284, 403, 581
BstMBI GATC 1 cut(s) 615
BstNI CCWGG 2 cut(s) 241, 516
BstSCI CCNGG 2 cut(s) 239, 514
BstSFI CTRYAG 2 cut(s) 352, 584
BstUI CGCG 2 cut(s) 231, 249
BstV1I GCAGC 3 cut(s) 238, 338, 570
BtsCI GGATG 3 cut(s) 28, 249, 307
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 1 cut(s) 361
BveI ACCTGC 1 cut(s) 577
Cac8I GCNNGC 2 cut(s) 114, 249
CciI TCATGA 1 cut(s) 163
CfoI GCGC 4 cut(s) 72, 231, 249, 251
Csp6I GTAC 3 cut(s) 187, 379, 402
CviAII CATG 2 cut(s) 164, 199
CviJI RGCY 7 cut(s) 116, 294, 325, 351, 437, 508, 583
CviKI_1 RGCY 7 cut(s) 116, 294, 325, 351, 437, 508, 583
CviQI GTAC 3 cut(s) 187, 379, 402
DdeI CTNAG 1 cut(s) 500
DpnI GATC 1 cut(s) 617
DpnII GATC 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 79, 459
EarI CTCTTC 2 cut(s) 79, 459
Eco31I GGTCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 417
EcoRII CCWGG 2 cut(s) 239, 514
FaeI CATG 2 cut(s) 167, 202
FaiI YATR 6 cut(s) 96, 165, 200, 366, 395, 567
FatI CATG 2 cut(s) 163, 198
Fnu4HI GCNGC 3 cut(s) 227, 352, 584
FokI GGATG 3 cut(s) 15, 256, 294
Fsp4HI GCNGC 3 cut(s) 227, 352, 584
FspBI CTAG 4 cut(s) 348, 399, 480, 608
GlaI GCGC 4 cut(s) 71, 230, 248, 250
GluI GCNGC 3 cut(s) 227, 352, 584
GsuI CTGGAG 1 cut(s) 563
HhaI GCGC 4 cut(s) 72, 231, 249, 251
Hin1II CATG 2 cut(s) 167, 202
Hin6I GCGC 4 cut(s) 70, 229, 247, 249
HinP1I GCGC 4 cut(s) 70, 229, 247, 249
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 1 cut(s) 262
HphI GGTGA 3 cut(s) 16, 418, 601
Hpy166II GTNNAC 4 cut(s) 26, 43, 196, 535
Hpy188I TCNGA 3 cut(s) 33, 157, 422
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 4 cut(s) 26, 43, 196, 535
HpyAV CCTTC 1 cut(s) 498
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 1 cut(s) 37
HpyCH4V TGCA 8 cut(s) 52, 86, 218, 340, 354, 359, 452, 586
HpyF3I CTNAG 1 cut(s) 500
HpySE526I ACGT 1 cut(s) 37
Hsp92II CATG 2 cut(s) 167, 202
HspAI GCGC 4 cut(s) 70, 229, 247, 249
KpnI GGTACC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 615
LguI GCTCTTC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 389, 422
LpnPI CCDG 9 cut(s) 126, 226, 253, 469, 501, 528, 533, 572, 593
Lsp1109I GCAGC 3 cut(s) 238, 338, 570
LweI GCATC 2 cut(s) 227, 234
MaeI CTAG 4 cut(s) 348, 399, 480, 608
MaeII ACGT 1 cut(s) 37
MaeIII GTNAC 3 cut(s) 149, 568, 589
MalI GATC 1 cut(s) 617
MboI GATC 1 cut(s) 615
MboII GAAGA 8 cut(s) 66, 102, 136, 382, 385, 476, 563, 590
MluCI AATT 4 cut(s) 100, 177, 274, 542
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 7 cut(s) 6, 133, 315, 321, 397, 460, 512
MslI CAYNNNNRTG 2 cut(s) 203, 312
MspA1I CMGCKG 1 cut(s) 583
MspR9I CCNGG 2 cut(s) 241, 516
MvaI CCWGG 2 cut(s) 241, 516
MvnI CGCG 2 cut(s) 231, 249
NdeII GATC 1 cut(s) 615
NlaIII CATG 2 cut(s) 167, 202
NlaIV GGNNCC 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 589
NspV TTCGAA 1 cut(s) 320
PagI TCATGA 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 577
PauI GCGCGC 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 262
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 3 cut(s) 228, 353, 585
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 239, 514
PspGI CCWGG 2 cut(s) 239, 514
PspN4I GGNNCC 1 cut(s) 188
PstI CTGCAG 2 cut(s) 356, 588
PteI GCGCGC 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 3 cut(s) 188, 380, 403
RsaNI GTAC 3 cut(s) 187, 379, 402
RseI CAYNNNNRTG 2 cut(s) 203, 312
SapI GCTCTTC 1 cut(s) 79
SatI GCNGC 3 cut(s) 227, 352, 584
Sau3AI GATC 1 cut(s) 615
ScaI AGTACT 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 241, 516
SetI ASST 8 cut(s) 40, 118, 296, 307, 353, 439, 585, 591
SfaNI GCATC 2 cut(s) 227, 234
SfcI CTRYAG 2 cut(s) 352, 584
SfuI TTCGAA 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 203, 312
Sse9I AATT 4 cut(s) 100, 177, 274, 542
SsiI CCGC 1 cut(s) 413
SspMI CTAG 4 cut(s) 348, 399, 480, 608
StyD4I CCNGG 2 cut(s) 239, 514
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 1 cut(s) 40
TaqI TCGA 2 cut(s) 320, 618
TasI AATT 4 cut(s) 100, 177, 274, 542
TatI WGTACW 1 cut(s) 378
TfiI GAWTC 1 cut(s) 262
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 3 cut(s) 226, 351, 583
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 2 cut(s) 152, 555
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 63
XspI CTAG 4 cut(s) 348, 399, 480, 608
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.