Rroxscaffold_5G00345790

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012121
Physical Location & Seq
Forward (+)
16315204 .. 16315827
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00345790.1

Sequence Viewer

Length: 624 bp
ATGATGAGGCAAATGGGTAAACATCCGAAACGTGGTTACTCTCTGCAACCCAACAGATGGGTGCGTTCTTCTGTGTTTGCAAGAAGATATGTCAATTACTTATTGCCAGCTCTGAAGAAGAACAAAGAAAACGAGGAGTGCTGTAACTCCGATATTCATGAGTTGGAGAAAATTGTTGGGTACCAAGTGAACATGGCAATGGTGCTGTCTGCATCGACGCAGCGCGAGTTTGCCTGGATGCGCGCTTTGAAACAGAAGCTCCAAACAAATTGTCTCAATGGTAAGAGCTTTCTGCTACCTCATCCTCGTGTCTCGAAGCCTTTGAGTTTTCGGCAAAACCCTAGTTGCAGTGCAAGTTATAAGAAGAAGTACTGCTCCTCCAATATGCCTAGTACGGTGAGACCGCATTTCGGAGCAAGAACTTCAGCTATCAAGGAAAATGCAAAGAAAGACGAAGAGGCAGAGATGACTAGCAGGAAGTTGGTATCACTAAGAAGGCTTTTACCAGGAGGGAATGAGATGGTTGACGATGAATTGCTGGAAGAAGTAGGAAGTTATGTAACTTGTCTCCAGCTGCAGGTGACTATTCTTCGGTGTCTAGTGGGGATCGAACTCGTTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.72

Weight (kDa)

9.56

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 24 - 91 1.2e-23 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AarI CACCTGC 1 cut(s) 568
Acc36I ACCTGC 1 cut(s) 568
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 180
AccB7I CCANNNNNTGG 1 cut(s) 57
AccII CGCG 2 cut(s) 225, 243
AciI CCGC 1 cut(s) 404
AclWI GGATC 1 cut(s) 614
AcuI CTGAAG 2 cut(s) 134, 408
AfaI GTAC 3 cut(s) 182, 371, 394
AfiI CCNNNNNNNGG 4 cut(s) 32, 57, 410, 577
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 2 cut(s) 233, 505
AluBI AGCT 5 cut(s) 110, 259, 288, 428, 574
AluI AGCT 5 cut(s) 110, 259, 288, 428, 574
Alw26I GTCTC 4 cut(s) 278, 316, 394, 572
AlwI GGATC 1 cut(s) 614
ApeKI GCWGC 2 cut(s) 220, 574
ArsI GACNNNNNNTTYG 2 cut(s) 256, 288
Asp718I GGTACC 1 cut(s) 180
AspLEI GCGC 3 cut(s) 225, 243, 245
AsuHPI GGTGA 2 cut(s) 409, 592
BanI GGYRCC 1 cut(s) 180
BauI CACGAG 1 cut(s) 306
BbvI GCAGC 2 cut(s) 232, 561
BccI CCATC 2 cut(s) 51, 514
BciT130I CCWGG 2 cut(s) 235, 507
BcoDI GTCTC 4 cut(s) 278, 316, 394, 572
BfaI CTAG 4 cut(s) 342, 390, 471, 599
BfmI CTRYAG 1 cut(s) 575
BfuAI ACCTGC 1 cut(s) 568
BisI GCNGC 2 cut(s) 221, 575
BlsI GCNGC 2 cut(s) 222, 576
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 2 cut(s) 235, 507
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 235, 507
BmsI GCATC 2 cut(s) 221, 228
BpmI CTGGAG 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 394
BsaXI ACNNNNNCTCC 4 cut(s) 243, 273, 362, 392
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 57, 410, 577
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 235, 507
BseGI GGATG 3 cut(s) 22, 243, 301
BseLI CCNNNNNNNGG 4 cut(s) 32, 57, 410, 577
BseMI GCAATG 1 cut(s) 204
BsePI GCGCGC 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 149, 367
BseXI GCAGC 2 cut(s) 232, 561
Bsh1236I CGCG 2 cut(s) 225, 243
BshNI GGYRCC 1 cut(s) 180
BslI CCNNNNNNNGG 4 cut(s) 32, 57, 410, 577
BsmAI GTCTC 4 cut(s) 278, 316, 394, 572
Bso31I GGTCTC 1 cut(s) 394
Bsp143I GATC 1 cut(s) 606
BspACI CCGC 1 cut(s) 404
BspFNI CGCG 2 cut(s) 225, 243
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 579
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 1 cut(s) 614
BspT107I GGYRCC 1 cut(s) 180
BspTNI GGTCTC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 204
BssHII GCGCGC 1 cut(s) 241
BssMI GATC 1 cut(s) 606
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 2 cut(s) 235, 507
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 108, 243
BstDEI CTNAG 1 cut(s) 491
BstF5I GGATG 3 cut(s) 22, 243, 301
BstFNI CGCG 2 cut(s) 225, 243
BstHHI GCGC 3 cut(s) 225, 243, 245
BstKTI GATC 1 cut(s) 609
BstMAI GTCTC 4 cut(s) 278, 316, 394, 572
BstMBI GATC 1 cut(s) 606
BstNI CCWGG 2 cut(s) 235, 507
BstSCI CCNGG 2 cut(s) 233, 505
BstSFI CTRYAG 1 cut(s) 575
BstUI CGCG 2 cut(s) 225, 243
BstV1I GCAGC 2 cut(s) 232, 561
BtsCI GGATG 3 cut(s) 22, 243, 301
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 2 cut(s) 108, 243
CciI TCATGA 1 cut(s) 157
CfoI GCGC 3 cut(s) 225, 243, 245
CseI GACGC 1 cut(s) 226
Csp6I GTAC 3 cut(s) 181, 370, 393
CviAII CATG 2 cut(s) 158, 193
CviJI RGCY 7 cut(s) 110, 259, 288, 319, 428, 499, 574
CviKI_1 RGCY 7 cut(s) 110, 259, 288, 319, 428, 499, 574
CviQI GTAC 3 cut(s) 181, 370, 393
DdeI CTNAG 1 cut(s) 491
DpnI GATC 1 cut(s) 608
DpnII GATC 1 cut(s) 606
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 134, 408
EcoRII CCWGG 2 cut(s) 233, 505
FaeI CATG 2 cut(s) 161, 196
FaiI YATR 6 cut(s) 90, 159, 194, 360, 386, 558
FatI CATG 2 cut(s) 157, 192
Fnu4HI GCNGC 2 cut(s) 221, 575
FokI GGATG 3 cut(s) 9, 250, 288
Fsp4HI GCNGC 2 cut(s) 221, 575
FspBI CTAG 4 cut(s) 342, 390, 471, 599
GlaI GCGC 3 cut(s) 224, 242, 244
GluI GCNGC 2 cut(s) 221, 575
GsuI CTGGAG 1 cut(s) 554
HgaI GACGC 1 cut(s) 226
HhaI GCGC 3 cut(s) 225, 243, 245
Hin1II CATG 2 cut(s) 161, 196
Hin6I GCGC 3 cut(s) 223, 241, 243
HinP1I GCGC 3 cut(s) 223, 241, 243
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HphI GGTGA 2 cut(s) 409, 592
Hpy166II GTNNAC 3 cut(s) 20, 190, 526
Hpy188I TCNGA 4 cut(s) 27, 114, 151, 413
Hpy188III TCNNGA 2 cut(s) 158, 313
Hpy8I GTNNAC 3 cut(s) 20, 190, 526
Hpy99I CGWCG 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 489
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 7 cut(s) 46, 80, 212, 348, 353, 443, 577
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 2 cut(s) 161, 196
HspAI GCGC 3 cut(s) 223, 241, 243
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 1 cut(s) 606
LmnI GCTCC 3 cut(s) 264, 380, 413
LpnPI CCDG 9 cut(s) 120, 220, 247, 460, 492, 519, 524, 563, 584
Lsp1109I GCAGC 2 cut(s) 232, 561
LweI GCATC 2 cut(s) 221, 228
MaeI CTAG 4 cut(s) 342, 390, 471, 599
MaeII ACGT 1 cut(s) 31
MaeIII GTNAC 4 cut(s) 35, 143, 559, 580
MalI GATC 1 cut(s) 608
MboI GATC 1 cut(s) 606
MboII GAAGA 8 cut(s) 60, 96, 127, 130, 376, 467, 554, 581
MluCI AATT 4 cut(s) 94, 171, 268, 533
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 6 cut(s) 127, 309, 315, 388, 451, 503
MslI CAYNNNNRTG 2 cut(s) 197, 306
MspA1I CMGCKG 1 cut(s) 574
MspR9I CCNGG 2 cut(s) 235, 507
MvaI CCWGG 2 cut(s) 235, 507
MvnI CGCG 2 cut(s) 225, 243
NdeII GATC 1 cut(s) 606
NlaIII CATG 2 cut(s) 161, 196
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 580
PagI TCATGA 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 568
PauI GCGCGC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 57
PkrI GCNGC 2 cut(s) 222, 576
PsiI TTATAA 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 233, 505
PspGI CCWGG 2 cut(s) 233, 505
PspN4I GGNNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 579
PteI GCGCGC 1 cut(s) 241
PvuII CAGCTG 1 cut(s) 574
RsaI GTAC 3 cut(s) 182, 371, 394
RsaNI GTAC 3 cut(s) 181, 370, 393
RseI CAYNNNNRTG 2 cut(s) 197, 306
SatI GCNGC 2 cut(s) 221, 575
Sau3AI GATC 1 cut(s) 606
ScaI AGTACT 1 cut(s) 371
ScrFI CCNGG 2 cut(s) 235, 507
SetI ASST 8 cut(s) 34, 112, 261, 290, 301, 430, 576, 582
SfaNI GCATC 2 cut(s) 221, 228
SfcI CTRYAG 1 cut(s) 575
SmiMI CAYNNNNRTG 2 cut(s) 197, 306
Sse9I AATT 4 cut(s) 94, 171, 268, 533
SsiI CCGC 1 cut(s) 404
SspMI CTAG 4 cut(s) 342, 390, 471, 599
StyD4I CCNGG 2 cut(s) 233, 505
TaaI ACNGT 1 cut(s) 397
TaiI ACGT 1 cut(s) 34
TaqI TCGA 3 cut(s) 215, 314, 609
TasI AATT 4 cut(s) 94, 171, 268, 533
TatI WGTACW 1 cut(s) 369
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 2 cut(s) 220, 574
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 2 cut(s) 146, 546
TspRI CASTG 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 57
XspI CTAG 4 cut(s) 342, 390, 471, 599
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.