Rh4BG099800

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012121
Physical Location & Seq
Forward (+)
17071770 .. 17074412
2643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG099800.1

Sequence Viewer

Length: 750 bp
ATGGTGATGATGAGGCAAATGGGTAAACATCCGAAACGTGTTTACTCTCTGCAACCCAACAGATGGGTGCGTTCTTCTGTGTTTGCAAGAAGATATGTCAATTACTTATTGCCAGCTCTGAAGAAGAACAAAGAAAACGAGGAGTGCTGTAACTCCGATATTCATGAGTTGGAGAAAATTGTTGGGTACCAAGTTAACATGGCAATGGTGCTGTCTGCATCAACGCAGCGCGAGTTTGCCTGGATGCGCGCTTTGAAACAGAAGCTCCAAACAAATTGTCTCAATGGTAAGAGCTTTCTGCTACCTCATCTTCGTGTTTCGAAGCCTTTGAGTTTTCTGCAAAACCCTAGCTGTAGTGCAAGTTATAAGAAGAAGAAGTACTGCTCCTCCAATATGCCTAGTACGGTGAGACCGCATTTCGGAGCAAGAACTTCAGCTATCAAGGAAAATGCAAAGAAAGACGAAGAGGCAGAGATGACTAGCAGGAAGTTGGTATCACTAAGAAGGCTTTTACCAGGAGGGAATGAGATGGTTGACGATGAATTGCTGGAAGAAGTAGGAAGTTATGTAACTTGTCTCCAGCTGCAGCCGGACGGCCAGATGCCGAGCGACAAGACCGTCGACCGTGGCGACGCCGCTTTCAACACCTTCTTCTCCGAGACTGGCGTCGGCAAGCACGTCCCATGCGCCATCTTCGTCCACCTCGAGCCCACCGTCATCGACGAGGTCCGCATCGGAACCTACTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.32

Weight (kDa)

9.22

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 26 - 93 1.7e-23 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AasI GACNNNNNNGTC 1 cut(s) 617
Acc65I GGTACC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 186
AccB7I CCANNNNNTGG 1 cut(s) 63
AccI GTMKAC 1 cut(s) 621
AccII CGCG 2 cut(s) 231, 249
AciI CCGC 3 cut(s) 413, 636, 730
AcoI YGGCCR 1 cut(s) 595
AcuI CTGAAG 2 cut(s) 140, 417
AcyI GRCGYC 2 cut(s) 633, 666
AfaI GTAC 3 cut(s) 188, 380, 403
AfiI CCNNNNNNNGG 2 cut(s) 63, 419
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 2 cut(s) 256, 643
AjiI CACGTC 1 cut(s) 679
AjnI CCWGG 2 cut(s) 239, 514
AluBI AGCT 6 cut(s) 116, 265, 294, 351, 437, 583
AluI AGCT 6 cut(s) 116, 265, 294, 351, 437, 583
Alw26I GTCTC 4 cut(s) 284, 403, 581, 653
Ama87I CYCGRG 1 cut(s) 704
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 3 cut(s) 226, 583, 586
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
Asp718I GGTACC 1 cut(s) 186
AspLEI GCGC 4 cut(s) 231, 249, 251, 689
AspS9I GGNCC 1 cut(s) 727
AsuHPI GGTGA 2 cut(s) 16, 418
AsuII TTCGAA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 704
AvaII GGWCC 1 cut(s) 727
BanI GGYRCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 711
BarI GAAGNNNNNNTAC 2 cut(s) 362, 394
BbvI GCAGC 3 cut(s) 238, 570, 598
BccI CCATC 3 cut(s) 57, 523, 698
BceAI ACGGC 1 cut(s) 610
BciT130I CCWGG 2 cut(s) 241, 516
BcoDI GTCTC 4 cut(s) 284, 403, 581, 653
BfaI CTAG 4 cut(s) 348, 399, 480, 748
BfmI CTRYAG 2 cut(s) 352, 584
BisI GCNGC 4 cut(s) 227, 584, 587, 636
BlsI GCNGC 4 cut(s) 228, 585, 588, 637
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 2 cut(s) 241, 516
Bme18I GGWCC 1 cut(s) 727
BmeT110I CYCGRG 1 cut(s) 704
BmgBI CACGTC 1 cut(s) 679
BmgT120I GGNCC 1 cut(s) 727
BmiI GGNNCC 2 cut(s) 188, 739
BmrFI CCNGG 2 cut(s) 241, 516
BmsI GCATC 4 cut(s) 227, 234, 591, 741
BoxI GACNNNNGTC 1 cut(s) 665
BpmI CTGGAG 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 320
BsaHI GRCGYC 2 cut(s) 633, 666
BsaI GGTCTC 1 cut(s) 403
BsaJI CCNNGG 1 cut(s) 625
BsaXI ACNNNNNCTCC 4 cut(s) 249, 279, 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 63, 419
Bse1I ACTGG 1 cut(s) 667
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 241, 516
BseDI CCNNGG 1 cut(s) 625
BseGI GGATG 2 cut(s) 28, 249
BseLI CCNNNNNNNGG 2 cut(s) 63, 419
BseMI GCAATG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 667
BsePI GCGCGC 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 155, 376
BseXI GCAGC 3 cut(s) 238, 570, 598
Bsh1236I CGCG 2 cut(s) 231, 249
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 1 cut(s) 597
BshNI GGYRCC 1 cut(s) 186
BsiEI CGRYCG 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 704
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 665
BslI CCNNNNNNNGG 2 cut(s) 63, 419
BsmAI GTCTC 4 cut(s) 284, 403, 581, 653
BsmFI GGGAC 1 cut(s) 665
BsnI GGCC 1 cut(s) 597
Bso31I GGTCTC 1 cut(s) 403
BsoBI CYCGRG 1 cut(s) 704
Bsp119I TTCGAA 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 711
BspACI CCGC 3 cut(s) 413, 636, 730
BspANI GGCC 1 cut(s) 597
BspFNI CGCG 2 cut(s) 231, 249
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 188, 739
BspMAI CTGCAG 1 cut(s) 588
BspT104I TTCGAA 1 cut(s) 320
BspT107I GGYRCC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 210
BsrI ACTGG 1 cut(s) 667
BssECI CCNNGG 1 cut(s) 625
BssHII GCGCGC 1 cut(s) 247
BssNI GRCGYC 2 cut(s) 633, 666
Bst2UI CCWGG 2 cut(s) 241, 516
Bst4CI ACNGT 4 cut(s) 406, 619, 626, 715
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 2 cut(s) 633, 666
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 114, 249, 674
BstDEI CTNAG 1 cut(s) 500
BstDSI CCRYGG 1 cut(s) 625
BstF5I GGATG 2 cut(s) 28, 249
BstFNI CGCG 2 cut(s) 231, 249
BstHHI GCGC 4 cut(s) 231, 249, 251, 689
BstMAI GTCTC 4 cut(s) 284, 403, 581, 653
BstMCI CGRYCG 1 cut(s) 625
BstNI CCWGG 2 cut(s) 241, 516
BstPAI GACNNNNGTC 1 cut(s) 665
BstSCI CCNGG 2 cut(s) 239, 514
BstSFI CTRYAG 2 cut(s) 352, 584
BstUI CGCG 2 cut(s) 231, 249
BstV1I GCAGC 3 cut(s) 238, 570, 598
BsuRI GGCC 1 cut(s) 597
BtgI CCRYGG 1 cut(s) 625
BtrI CACGTC 1 cut(s) 679
BtsCI GGATG 2 cut(s) 28, 249
Cac8I GCNNGC 3 cut(s) 114, 249, 674
CciI TCATGA 1 cut(s) 163
CfoI GCGC 4 cut(s) 231, 249, 251, 689
Cfr13I GGNCC 1 cut(s) 727
CseI GACGC 2 cut(s) 641, 655
Csp6I GTAC 3 cut(s) 187, 379, 402
CviAII CATG 3 cut(s) 164, 199, 684
CviQI GTAC 3 cut(s) 187, 379, 402
DdeI CTNAG 1 cut(s) 500
DrdI GACNNNNNNGTC 1 cut(s) 617
DseDI GACNNNNNNGTC 1 cut(s) 617
EaeI YGGCCR 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco24I GRGCYC 1 cut(s) 711
Eco31I GGTCTC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 727
Eco57I CTGAAG 2 cut(s) 140, 417
Eco88I CYCGRG 1 cut(s) 704
EcoRII CCWGG 2 cut(s) 239, 514
EcoT38I GRGCYC 1 cut(s) 711
FaeI CATG 3 cut(s) 167, 202, 687
FaiI YATR 7 cut(s) 96, 165, 200, 366, 395, 567, 685
FaqI GGGAC 1 cut(s) 665
FatI CATG 3 cut(s) 163, 198, 683
FblI GTMKAC 1 cut(s) 621
Fnu4HI GCNGC 4 cut(s) 227, 584, 587, 636
FokI GGATG 2 cut(s) 15, 256
FriOI GRGCYC 1 cut(s) 711
Fsp4HI GCNGC 4 cut(s) 227, 584, 587, 636
FspBI CTAG 4 cut(s) 348, 399, 480, 748
GlaI GCGC 4 cut(s) 230, 248, 250, 688
GluI GCNGC 4 cut(s) 227, 584, 587, 636
GsuI CTGGAG 1 cut(s) 563
HaeIII GGCC 1 cut(s) 597
HapII CCGG 1 cut(s) 590
HgaI GACGC 2 cut(s) 641, 655
HhaI GCGC 4 cut(s) 231, 249, 251, 689
Hin1I GRCGYC 2 cut(s) 633, 666
Hin1II CATG 3 cut(s) 167, 202, 687
Hin6I GCGC 4 cut(s) 229, 247, 249, 687
HinP1I GCGC 4 cut(s) 229, 247, 249, 687
HincII GTYRAC 3 cut(s) 196, 535, 622
HindII GTYRAC 3 cut(s) 196, 535, 622
HpaI GTTAAC 1 cut(s) 196
HpaII CCGG 1 cut(s) 590
HphI GGTGA 2 cut(s) 16, 418
Hpy166II GTNNAC 6 cut(s) 26, 43, 196, 535, 622, 700
Hpy188I TCNGA 6 cut(s) 33, 120, 157, 422, 658, 737
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 6 cut(s) 26, 43, 196, 535, 622, 700
Hpy99I CGWCG 4 cut(s) 623, 635, 671, 725
HpyAV CCTTC 2 cut(s) 498, 658
HpyCH4III ACNGT 4 cut(s) 406, 619, 626, 715
HpyCH4IV ACGT 2 cut(s) 37, 678
HpyCH4V TGCA 7 cut(s) 52, 86, 218, 340, 359, 452, 586
HpyF3I CTNAG 1 cut(s) 500
HpySE526I ACGT 2 cut(s) 37, 678
Hsp92I GRCGYC 2 cut(s) 633, 666
Hsp92II CATG 3 cut(s) 167, 202, 687
HspAI GCGC 4 cut(s) 229, 247, 249, 687
KpnI GGTACC 1 cut(s) 190
KspAI GTTAAC 1 cut(s) 196
LmnI GCTCC 3 cut(s) 270, 389, 422
Lsp1109I GCAGC 3 cut(s) 238, 570, 598
LweI GCATC 4 cut(s) 227, 234, 591, 741
MaeI CTAG 4 cut(s) 348, 399, 480, 748
MaeII ACGT 2 cut(s) 37, 678
MaeIII GTNAC 2 cut(s) 149, 568
MhlI GDGCHC 1 cut(s) 711
MluCI AATT 4 cut(s) 100, 177, 274, 542
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 8 cut(s) 6, 133, 315, 397, 460, 512, 713, 718
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 203, 312
MspA1I CMGCKG 1 cut(s) 583
MspI CCGG 1 cut(s) 590
MspR9I CCNGG 2 cut(s) 241, 516
MvaI CCWGG 2 cut(s) 241, 516
MvnI CGCG 2 cut(s) 231, 249
NlaIII CATG 3 cut(s) 167, 202, 687
NlaIV GGNNCC 2 cut(s) 188, 739
NmeAIII GCCGAG 1 cut(s) 630
NspV TTCGAA 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 704
PagI TCATGA 1 cut(s) 163
PauI GCGCGC 1 cut(s) 247
PcsI WCGNNNNNNNCGW 4 cut(s) 627, 675, 702, 711
PflFI GACNNNGTC 1 cut(s) 725
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 4 cut(s) 228, 585, 588, 637
PshAI GACNNNNGTC 1 cut(s) 665
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 2 cut(s) 239, 514
PspGI CCWGG 2 cut(s) 239, 514
PspN4I GGNNCC 2 cut(s) 188, 739
PspPI GGNCC 1 cut(s) 727
PspXI VCTCGAGB 1 cut(s) 704
PstI CTGCAG 1 cut(s) 588
PsyI GACNNNGTC 1 cut(s) 725
PteI GCGCGC 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 583
RsaI GTAC 3 cut(s) 188, 380, 403
RsaNI GTAC 3 cut(s) 187, 379, 402
RseI CAYNNNNRTG 2 cut(s) 203, 312
SalI GTCGAC 1 cut(s) 620
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 4 cut(s) 227, 584, 587, 636
Sau96I GGNCC 1 cut(s) 727
ScaI AGTACT 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 241, 516
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 4 cut(s) 227, 234, 591, 741
SfcI CTRYAG 2 cut(s) 352, 584
Sfr274I CTCGAG 1 cut(s) 704
SfuI TTCGAA 1 cut(s) 320
SinI GGWCC 1 cut(s) 727
SlaI CTCGAG 1 cut(s) 704
SmiMI CAYNNNNRTG 2 cut(s) 203, 312
SmlI CTYRAG 1 cut(s) 704
SmoI CTYRAG 1 cut(s) 704
Sse9I AATT 4 cut(s) 100, 177, 274, 542
SsiI CCGC 3 cut(s) 413, 636, 730
SspMI CTAG 4 cut(s) 348, 399, 480, 748
StyD4I CCNGG 2 cut(s) 239, 514
TaaI ACNGT 4 cut(s) 406, 619, 626, 715
TaiI ACGT 2 cut(s) 40, 681
TaqI TCGA 4 cut(s) 320, 621, 705, 720
TasI AATT 4 cut(s) 100, 177, 274, 542
TatI WGTACW 1 cut(s) 378
TauI GCSGC 1 cut(s) 638
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 3 cut(s) 226, 583, 586
TspDTI ATGAA 2 cut(s) 152, 555
Tth111I GACNNNGTC 1 cut(s) 725
Van91I CCANNNNNTGG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 727
XhoI CTCGAG 1 cut(s) 704
XmiI GTMKAC 1 cut(s) 621
XspI CTAG 4 cut(s) 348, 399, 480, 748
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.