Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012121

Physical Location & Seq

Genomic Coordinates Reverse (-)

54870794 .. 54871541

Gene Structure 748 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGTTCTTCCCCAGCTGCCAGCAAACCAACCAAACAAACAGGTGACAACATCAGACCACCCAAACTCAGGTTCCAAGAACATGGATCTGCCTACCACCGTGCTAAACTCCTCCGTCCCTACTGTCCTCCGTCGTCTAAAACCCAGATTCCGGCGAGCCTCACCAACACGCCTCTATCTGCCCAACACACCTCGATCTGCCGTAACCTAGATCGACAACCAAGTCCCTCGCCGGCAACAAGCCATAAAACGCCTGCAACATCACACCAAGAACTGAGGGCCGCCATGTATCCACCAGAATCCTCTACACCGTTGTGCTCGATTCCAAGGTTTGAAGAATCCACAGCAGCAAAATACAAAAACCAAAACCAAATTCAGATGCTCACAGAGTTTGGTGCACACATAACTCTTCGGGTTGTACGTCGGCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.96

Weight (kDa)

10.15

Isoelectric Point (pI)

70.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18969 AT4G30180
fragaria_vesca	FvH4_4g07800
prunus_persica	Prupe.1G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0400891
rosa_laevigata	RLG00000003757 RLG00000009169 RLG00000024970
rosa_multiflora	Rmu_sc0014690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272550 Rroxscaffold_5G00345790
rosa_rugosa	Rorug04G0026900
rosa_samantha	Rh4BG099800 Rh4CG113000 Rh4DG096800 Rh6DG346900 Rh7BG077700 Rh7DG290900
rosa_wichuraiana	Rw4G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	222
AciI	CCGC	1 cut(s)	282
AclWI	GGATC	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	372
AfaI	GTAC	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	69, 151
AgsI	TTSAA	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	4 cut(s)	56, 88, 357, 389
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	2 cut(s)	320, 400
Alw44I	GTGCAC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	17, 347
ApoI	RAATTY	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	56, 154
BaeGI	GKGCMC	1 cut(s)	400
Bbv12I	GWGCWC	2 cut(s)	320, 400
BbvI	GCAGC	2 cut(s)	4, 359
BceAI	ACGGC	1 cut(s)	186
BciVI	GTATCC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	209, 428
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	18, 282, 348
BlsI	GCNGC	3 cut(s)	19, 283, 349
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	1 cut(s)	369
BsaJI	CCNNGG	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 151
Bse118I	RCCGGY	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	69, 151
BseMII	CTCAG	2 cut(s)	82, 266
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	4, 359
BseYI	CCCAGC	1 cut(s)	13
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	320, 400
BsiSI	CCGG	2 cut(s)	152, 233
BslFI	GGGAC	2 cut(s)	102, 210
BslI	CCNNNNNNNGG	2 cut(s)	69, 151
BsmFI	GGGAC	2 cut(s)	102, 210
BsnI	GGCC	1 cut(s)	281
Bsp1286I	GDGCHC	2 cut(s)	320, 400
Bsp143I	GATC	3 cut(s)	86, 195, 211
BspACI	CCGC	1 cut(s)	282
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	81, 267
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	3 cut(s)	86, 195, 211
BssT1I	CCWWGG	1 cut(s)	326
Bst4CI	ACNGT	3 cut(s)	101, 125, 312
Bst6I	CTCTTC	1 cut(s)	414
BstC8I	GCNNGC	4 cut(s)	22, 157, 234, 255
BstDEI	CTNAG	2 cut(s)	68, 275
BstKTI	GATC	3 cut(s)	89, 198, 214
BstMBI	GATC	3 cut(s)	86, 195, 211
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	4, 359
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	1 cut(s)	86
BsuI	GTATCC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	281
Cac8I	GCNNGC	4 cut(s)	22, 157, 234, 255
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	419
CviAII	CATG	2 cut(s)	83, 286
CviJI	RGCY	5 cut(s)	17, 159, 243, 281, 427
CviKI_1	RGCY	5 cut(s)	17, 159, 243, 281, 427
CviQI	GTAC	1 cut(s)	419
DdeI	CTNAG	2 cut(s)	68, 275
DpnI	GATC	3 cut(s)	88, 197, 213
DpnII	GATC	3 cut(s)	86, 195, 211
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	326
EcoT14I	CCWWGG	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	2 cut(s)	86, 289
FaiI	YATR	4 cut(s)	84, 246, 287, 404
FaqI	GGGAC	2 cut(s)	102, 210
FatI	CATG	2 cut(s)	82, 285
Fnu4HI	GCNGC	3 cut(s)	18, 282, 348
Fsp4HI	GCNGC	3 cut(s)	18, 282, 348
FspBI	CTAG	2 cut(s)	209, 428
GluI	GCNGC	3 cut(s)	18, 282, 348
GsaI	CCCAGC	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	2 cut(s)	152, 233
Hin1II	CATG	2 cut(s)	86, 289
HinfI	GANTC	4 cut(s)	148, 299, 322, 338
HpaII	CCGG	2 cut(s)	152, 233
HphI	GGTGA	2 cut(s)	56, 154
Hpy166II	GTNNAC	1 cut(s)	398
Hpy188I	TCNGA	2 cut(s)	56, 378
Hpy8I	GTNNAC	1 cut(s)	398
Hpy99I	CGWCG	2 cut(s)	136, 426
HpyCH4III	ACNGT	3 cut(s)	101, 125, 312
HpyCH4IV	ACGT	1 cut(s)	421
HpyCH4V	TGCA	2 cut(s)	257, 398
HpyF3I	CTNAG	2 cut(s)	68, 275
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	2 cut(s)	86, 289
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Kzo9I	GATC	3 cut(s)	86, 195, 211
LpnPI	CCDG	9 cut(s)	27, 27, 34, 55, 158, 165, 246, 267, 309
Lsp1109I	GCAGC	2 cut(s)	4, 359
LweI	GCATC	1 cut(s)	369
MaeI	CTAG	2 cut(s)	209, 428
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	2 cut(s)	44, 203
MalI	GATC	3 cut(s)	88, 197, 213
MboI	GATC	3 cut(s)	86, 195, 211
MboII	GAAGA	2 cut(s)	347, 401
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	320, 400
MluCI	AATT	1 cut(s)	372
MnlI	CCTC	8 cut(s)	122, 138, 170, 183, 202, 238, 270, 313
MroNI	GCCGGC	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	152, 233
NaeI	GCCGGC	1 cut(s)	234
NdeII	GATC	3 cut(s)	86, 195, 211
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	86, 289
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	4 cut(s)	148, 299, 322, 338
PkrI	GCNGC	3 cut(s)	19, 283, 349
PspFI	CCCAGC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	74
PspPI	GGNCC	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	420
RsaNI	GTAC	1 cut(s)	419
RseI	CAYNNNNRTG	1 cut(s)	313
SatI	GCNGC	3 cut(s)	18, 282, 348
Sau3AI	GATC	3 cut(s)	86, 195, 211
Sau96I	GGNCC	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	320, 400
SetI	ASST	7 cut(s)	19, 46, 74, 194, 210, 332, 424
SfaNI	GCATC	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	1 cut(s)	282
SspMI	CTAG	2 cut(s)	209, 428
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	3 cut(s)	101, 125, 312
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	3 cut(s)	194, 214, 320
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	284
TfiI	GAWTC	4 cut(s)	148, 299, 322, 338
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	17, 347
Tsp45I	GTSAC	1 cut(s)	44
TspGWI	ACGGA	2 cut(s)	104, 120
VneI	GTGCAC	1 cut(s)	396
XapI	RAATTY	1 cut(s)	372
XspI	CTAG	2 cut(s)	209, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.