Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012121

Physical Location & Seq

Genomic Coordinates Forward (+)

6056763 .. 6058638

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G081900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGATGAGGCAAGTGAGTAAACAACATAGCCGAGGTTACTCTCTTCATCCCATCAAATTGGCAAGTTCTGTGTTTGCAAGAAAATATCTAAGTCACTTATTGCCGGCTCTGAAGAAGATGTTTGAAGAAAACACCATTTCTTCATCAAACAATAATGTTGATGAAGACTACTCTAAGTTAGAGAAACTTGTTGGGTACCAAGTGAACATGGCAATGGTATTCTCTGCCTCAACTTATCAGTTTGCATGGAGCCGTGCCTTGAAACAACAGCTCCAAACAAGACATGTACTCATATATGGTGAGGGATTATTGCCACGTCATCATGTTCCTAAGCCCTTGAACTTTCTCCCAAATCTCAGTGTTAGTGCCAGCAAGATGAAGAGGTACTCGAATCATAATATGTCTAATAAGGTCAGGCCACATTTTCTGAAAAGAAATTTAGCCATGAATGGAAAGACAAAGAAAAGCAAAGAGGCAGAGATTATTGAGAGGAAGTTGACATCTCTAAGACGGCTTTTACCAGGTGGGAATGAGATGGGTGAAGAAAATGAATTGTTGGCAGAAGTAGGAAGCTACATTTCTTGTCTCCAGTTACAGGGTAATCAACATCCTCCCAGGCGCTTTGTTTTGACTTATGGATATTCGACAACTATTGGCAGAGTTTTAAGTCCTTCGACTTCGACGTGTGTGTTCCGTGAAGCAAATATGGTAGCAGATGATCCTTGTATATGGTTTTGTAACTTTCCTAATTGTGTGGCTATAAAAGCTTTTATATTATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

9.82

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18969 AT4G30180
fragaria_vesca	FvH4_4g07800
prunus_persica	Prupe.1G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0400891
rosa_laevigata	RLG00000003757 RLG00000009169 RLG00000024970
rosa_multiflora	Rmu_sc0014690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272550 Rroxscaffold_5G00345790
rosa_rugosa	Rorug04G0026900
rosa_samantha	Rh4BG099800 Rh4CG113000 Rh4DG096800 Rh6DG346900 Rh7BG077700 Rh7DG290900
rosa_wichuraiana	Rw4G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	198
AccB1I	GGYRCC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	716
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	3 cut(s)	200, 291, 389
AfiI	CCNNNNNNNGG	1 cut(s)	598
AflIII	ACRYGT	2 cut(s)	286, 686
AgsI	TTSAA	3 cut(s)	128, 265, 343
AjiI	CACGTC	2 cut(s)	320, 687
AjnI	CCWGG	2 cut(s)	523, 617
AluBI	AGCT	3 cut(s)	274, 576, 770
AluI	AGCT	3 cut(s)	274, 576, 770
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	1 cut(s)	419
ApoI	RAATTY	1 cut(s)	439
Asp718I	GGTACC	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	624
AsuHPI	GGTGA	3 cut(s)	16, 314, 554
BanI	GGYRCC	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	174
BccI	CCATC	2 cut(s)	62, 532
BceAI	ACGGC	2 cut(s)	240, 530
BciT130I	CCWGG	2 cut(s)	525, 619
BcoDI	GTCTC	1 cut(s)	593
BfaI	CTAG	1 cut(s)	784
BfoI	RGCGCY	1 cut(s)	625
Bme1390I	CCNGG	2 cut(s)	525, 619
BmgBI	CACGTC	2 cut(s)	320, 687
BmiI	GGNNCC	2 cut(s)	200, 254
BmrFI	CCNGG	2 cut(s)	525, 619
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	575
Bpu10I	CCTNAGC	1 cut(s)	333
BsaJI	CCNNGG	2 cut(s)	34, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse118I	RCCGGY	1 cut(s)	106
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	525, 619
BseDI	CCNNGG	2 cut(s)	34, 617
BseGI	GGATG	2 cut(s)	49, 610
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	373
BseNI	ACTGG	1 cut(s)	592
BshFI	GGCC	1 cut(s)	421
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	593
BsnI	GGCC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	721
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	200, 254
BspPI	GGATC	1 cut(s)	716
BspT107I	GGYRCC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	34, 617
BssMI	GATC	1 cut(s)	721
Bst2UI	CCWGG	2 cut(s)	525, 619
Bst6I	CTCTTC	2 cut(s)	51, 377
BstC8I	GCNNGC	2 cut(s)	108, 373
BstDEI	CTNAG	5 cut(s)	92, 177, 333, 359, 509
BstF5I	GGATG	2 cut(s)	49, 610
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	1 cut(s)	724
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	1 cut(s)	721
BstMWI	GCNNNNNNNGC	1 cut(s)	767
BstNI	CCWGG	2 cut(s)	525, 619
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	523, 617
BstV2I	GAAGAC	1 cut(s)	174
BstXI	CCANNNNNNTGG	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	421
BtrI	CACGTC	2 cut(s)	320, 687
BtsCI	GGATG	2 cut(s)	49, 610
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	108, 373
CfoI	GCGC	1 cut(s)	624
Cfr10I	RCCGGY	1 cut(s)	106
CsiI	ACCWGGT	1 cut(s)	523
Csp6I	GTAC	3 cut(s)	199, 290, 388
CviAII	CATG	5 cut(s)	211, 249, 287, 326, 448
CviQI	GTAC	3 cut(s)	199, 290, 388
DdeI	CTNAG	5 cut(s)	92, 177, 333, 359, 509
DpnI	GATC	1 cut(s)	723
DpnII	GATC	1 cut(s)	721
Eam1104I	CTCTTC	2 cut(s)	51, 377
EarI	CTCTTC	2 cut(s)	51, 377
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	523, 617
FaeI	CATG	5 cut(s)	214, 252, 290, 329, 451
FatI	CATG	5 cut(s)	210, 248, 286, 325, 447
FokI	GGATG	2 cut(s)	36, 597
FspBI	CTAG	1 cut(s)	784
GlaI	GCGC	1 cut(s)	623
GsuI	CTGGAG	1 cut(s)	575
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	5 cut(s)	214, 252, 290, 329, 451
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HincII	GTYRAC	1 cut(s)	501
HindII	GTYRAC	1 cut(s)	501
HindIII	AAGCTT	1 cut(s)	768
HinfI	GANTC	1 cut(s)	394
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	3 cut(s)	16, 314, 554
Hpy166II	GTNNAC	3 cut(s)	23, 208, 501
Hpy188I	TCNGA	2 cut(s)	114, 432
Hpy8I	GTNNAC	3 cut(s)	23, 208, 501
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	1 cut(s)	684
HpyCH4IV	ACGT	2 cut(s)	319, 686
HpyCH4V	TGCA	2 cut(s)	80, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	767
HpyF3I	CTNAG	5 cut(s)	92, 177, 333, 359, 509
HpySE526I	ACGT	2 cut(s)	319, 686
Hsp92II	CATG	5 cut(s)	214, 252, 290, 329, 451
HspAI	GCGC	1 cut(s)	622
KpnI	GGTACC	1 cut(s)	202
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	721
LmnI	GCTCC	2 cut(s)	252, 279
LpnPI	CCDG	9 cut(s)	120, 385, 403, 510, 537, 584, 604, 605, 631
MabI	ACCWGGT	1 cut(s)	523
MaeI	CTAG	1 cut(s)	784
MaeII	ACGT	2 cut(s)	319, 686
MaeIII	GTNAC	4 cut(s)	38, 95, 594, 740
MalI	GATC	1 cut(s)	723
MboI	GATC	1 cut(s)	721
MboII	GAAGA	8 cut(s)	38, 127, 130, 135, 140, 179, 394, 557
MluCI	AATT	4 cut(s)	59, 439, 554, 751
MnlI	CCTC	8 cut(s)	3, 29, 241, 298, 378, 469, 486, 624
MroNI	GCCGGC	1 cut(s)	106
MseI	TTAA	1 cut(s)	668
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	525, 619
MvaI	CCWGG	2 cut(s)	525, 619
MwoI	GCNNNNNNNGC	1 cut(s)	767
NaeI	GCCGGC	1 cut(s)	108
NdeII	GATC	1 cut(s)	721
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	5 cut(s)	214, 252, 290, 329, 451
NlaIV	GGNNCC	2 cut(s)	200, 254
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	290
PciI	ACATGT	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	683
PdiI	GCCGGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	394
PscI	ACATGT	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	523, 617
PspGI	CCWGG	2 cut(s)	523, 617
PspN4I	GGNNCC	2 cut(s)	200, 254
RsaI	GTAC	3 cut(s)	200, 291, 389
RsaNI	GTAC	3 cut(s)	199, 290, 388
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	668
Sau3AI	GATC	1 cut(s)	721
ScrFI	CCNGG	2 cut(s)	525, 619
SetI	ASST	9 cut(s)	40, 276, 322, 389, 417, 529, 578, 689, 772
SexAI	ACCWGGT	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	4 cut(s)	59, 439, 554, 751
SspMI	CTAG	1 cut(s)	784
StyD4I	CCNGG	2 cut(s)	523, 617
TaiI	ACGT	2 cut(s)	322, 689
TaqI	TCGA	4 cut(s)	392, 647, 677, 683
TasI	AATT	4 cut(s)	59, 439, 554, 751
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	394
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	6 cut(s)	38, 135, 180, 395, 464, 567
TspGWI	ACGGA	1 cut(s)	686
TspRI	CASTG	1 cut(s)	367
XapI	RAATTY	1 cut(s)	439
XceI	RCATGY	1 cut(s)	290
XspI	CTAG	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.