FvH4_4g07800

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012121
Physical Location & Seq
Forward (+)
7305118 .. 7306066
949 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g07800.t1

Sequence Viewer

Length: 639 bp
ATGGTGATGATGAGGCAAATGGGTAAACAACAGAAACGGGTTTACGCTCTGCAAGCCAACAGATGGGTGCATTCTTCTGTGTTTGCAAGAAGATATGTCAGTTACTTATTGCCAGCTCTGAAGAGCAACAAAGAAAACGAGGAGTGCTCTAACTCTGATGTTCATGAGTTGCAGAAAATTGTTGAGTACCAAGTGAACATGGCAATGGTGCTGTCTGCATCAACAGATGGCGAGTTTGCCTGGATGCGCGCTTTGAAACAGAAGCTCCAAAAAAGCTGTCTCAATGGTAAGAGCTTGTTTCTGCTACCTCATCCTCGTGTTTCGAGGCCTGCTTTGAGTTTTCTGCAAAACCCTAGCTGCAGTGCAAGTTATAATAAGATGAAGAAGTACTGCTCCTCTAGTAGGCCTAGGAGGGTGAGACCGCATTTCCGACCAAGAACTTTAGCTATCAAGGAAAATACAGAGAAAGACGAAGAGGCAGAGATGATTAGCCGGAAGCTAGTGTCGCTAGGAAGGCTTTTACCAGGAGGGAATGAGATGGTTGACGATGAATTGCTGGAAGAAGTAGGAAGTTATGTAACTTGTCTCCAGCTGCAGGTGACTATTCTTCGGTGCATAGTGGGATCAATGAGCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

24.26

Weight (kDa)

9.59

Isoelectric Point (pI)

59.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 26 - 93 5.3e-23 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AarI CACCTGC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 586
AccB7I CCANNNNNTGG 1 cut(s) 63
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 422
AclWI GGATC 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 140
AfaI GTAC 2 cut(s) 188, 389
AfiI CCNNNNNNNGG 3 cut(s) 63, 402, 595
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 239, 523
AluBI AGCT 9 cut(s) 116, 265, 276, 294, 357, 446, 499, 592, 633
AluI AGCT 9 cut(s) 116, 265, 276, 294, 357, 446, 499, 592, 633
Alw21I GWGCWC 2 cut(s) 149, 635
Alw26I GTCTC 3 cut(s) 284, 412, 590
AlwI GGATC 1 cut(s) 631
AoxI GGCC 2 cut(s) 326, 404
ApeKI GCWGC 2 cut(s) 357, 592
ArsI GACNNNNNNTTYG 2 cut(s) 262, 294
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 2 cut(s) 249, 251
AsuHPI GGTGA 3 cut(s) 16, 427, 610
AvrII CCTAGG 1 cut(s) 407
BanII GRGCYC 1 cut(s) 635
BauI CACGAG 1 cut(s) 315
Bbv12I GWGCWC 2 cut(s) 149, 635
BbvI GCAGC 2 cut(s) 344, 579
BccI CCATC 3 cut(s) 57, 221, 532
BciT130I CCWGG 2 cut(s) 241, 525
BcoDI GTCTC 3 cut(s) 284, 412, 590
BfaI CTAG 5 cut(s) 354, 399, 408, 500, 509
BfmI CTRYAG 2 cut(s) 358, 593
BfuAI ACCTGC 1 cut(s) 586
BisI GCNGC 2 cut(s) 358, 593
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 2 cut(s) 359, 594
BmcAI AGTACT 1 cut(s) 389
Bme1390I CCNGG 2 cut(s) 241, 525
BmrFI CCNGG 2 cut(s) 241, 525
BmsI GCATC 2 cut(s) 227, 234
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 572
BsaI GGTCTC 1 cut(s) 412
BsaJI CCNNGG 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 249, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 402, 595
Bse3DI GCAATG 1 cut(s) 210
BseBI CCWGG 2 cut(s) 241, 525
BseDI CCNNGG 1 cut(s) 407
BseGI GGATG 2 cut(s) 249, 310
BseLI CCNNNNNNNGG 3 cut(s) 63, 402, 595
BseMI GCAATG 1 cut(s) 210
BsePI GCGCGC 1 cut(s) 247
BseRI GAGGAG 2 cut(s) 155, 385
BseXI GCAGC 2 cut(s) 344, 579
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 328, 406
BsiHKAI GWGCWC 2 cut(s) 149, 635
BsiSI CCGG 1 cut(s) 493
BslI CCNNNNNNNGG 3 cut(s) 63, 402, 595
BsmAI GTCTC 3 cut(s) 284, 412, 590
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 2 cut(s) 328, 406
Bso31I GGTCTC 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 149, 635
Bsp143I GATC 1 cut(s) 623
BspACI CCGC 1 cut(s) 422
BspANI GGCC 2 cut(s) 328, 406
BspFNI CGCG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 163
BspMAI CTGCAG 2 cut(s) 362, 597
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 1 cut(s) 631
BspQI GCTCTTC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 407
BssHII GCGCGC 1 cut(s) 247
BssMI GATC 1 cut(s) 623
BssSI CACGAG 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 407
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 241, 525
Bst6I CTCTTC 2 cut(s) 116, 468
BstC8I GCNNGC 4 cut(s) 54, 114, 249, 330
BstENI CCTNNNNNAGG 1 cut(s) 400
BstF5I GGATG 2 cut(s) 249, 310
BstFNI CGCG 1 cut(s) 249
BstHHI GCGC 2 cut(s) 249, 251
BstKTI GATC 1 cut(s) 626
BstMAI GTCTC 3 cut(s) 284, 412, 590
BstMBI GATC 1 cut(s) 623
BstMWI GCNNNNNNNGC 3 cut(s) 53, 505, 514
BstNI CCWGG 2 cut(s) 241, 525
BstSCI CCNGG 2 cut(s) 239, 523
BstSFI CTRYAG 2 cut(s) 358, 593
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 2 cut(s) 344, 579
BsuRI GGCC 2 cut(s) 328, 406
BtsCI GGATG 2 cut(s) 249, 310
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 4 cut(s) 54, 114, 249, 330
CciI TCATGA 1 cut(s) 163
CfoI GCGC 2 cut(s) 249, 251
Csp6I GTAC 2 cut(s) 187, 388
CviAII CATG 2 cut(s) 164, 199
CviQI GTAC 2 cut(s) 187, 388
DpnI GATC 1 cut(s) 625
DpnII GATC 1 cut(s) 623
Eam1104I CTCTTC 2 cut(s) 116, 468
EarI CTCTTC 2 cut(s) 116, 468
Ecl136II GAGCTC 1 cut(s) 633
Eco130I CCWWGG 1 cut(s) 407
Eco147I AGGCCT 2 cut(s) 328, 406
Eco24I GRGCYC 1 cut(s) 635
Eco31I GGTCTC 1 cut(s) 412
Eco53kI GAGCTC 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 140
EcoICRI GAGCTC 1 cut(s) 633
EcoNI CCTNNNNNAGG 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 239, 523
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 2 cut(s) 167, 202
FaiI YATR 6 cut(s) 96, 165, 200, 372, 576, 617
FatI CATG 2 cut(s) 163, 198
Fnu4HI GCNGC 2 cut(s) 358, 593
FokI GGATG 2 cut(s) 256, 297
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 2 cut(s) 358, 593
FspBI CTAG 5 cut(s) 354, 399, 408, 500, 509
GlaI GCGC 2 cut(s) 248, 250
GluI GCNGC 2 cut(s) 358, 593
GsuI CTGGAG 1 cut(s) 572
HaeIII GGCC 2 cut(s) 328, 406
HapII CCGG 1 cut(s) 493
HhaI GCGC 2 cut(s) 249, 251
Hin1II CATG 2 cut(s) 167, 202
Hin6I GCGC 2 cut(s) 247, 249
HinP1I GCGC 2 cut(s) 247, 249
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HpaII CCGG 1 cut(s) 493
HphI GGTGA 3 cut(s) 16, 427, 610
Hpy166II GTNNAC 4 cut(s) 26, 43, 196, 544
Hpy188I TCNGA 3 cut(s) 120, 157, 431
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 4 cut(s) 26, 43, 196, 544
HpyAV CCTTC 1 cut(s) 507
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 505, 514
Hsp92II CATG 2 cut(s) 167, 202
HspAI GCGC 2 cut(s) 247, 249
Kzo9I GATC 1 cut(s) 623
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 270, 398
Lsp1109I GCAGC 2 cut(s) 344, 579
LweI GCATC 2 cut(s) 227, 234
MaeI CTAG 5 cut(s) 354, 399, 408, 500, 509
MaeIII GTNAC 3 cut(s) 101, 577, 598
MalI GATC 1 cut(s) 625
MboI GATC 1 cut(s) 623
MboII GAAGA 7 cut(s) 66, 102, 133, 394, 485, 572, 599
MhlI GDGCHC 2 cut(s) 149, 635
MluCI AATT 2 cut(s) 177, 551
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 9 cut(s) 6, 133, 318, 318, 324, 405, 406, 469, 521
MslI CAYNNNNRTG 2 cut(s) 203, 315
MspA1I CMGCKG 1 cut(s) 592
MspI CCGG 1 cut(s) 493
MspR9I CCNGG 2 cut(s) 241, 525
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 2 cut(s) 241, 525
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 3 cut(s) 53, 505, 514
NdeII GATC 1 cut(s) 623
NlaIII CATG 2 cut(s) 167, 202
NmuCI GTSAC 1 cut(s) 598
PagI TCATGA 1 cut(s) 163
PaqCI CACCTGC 1 cut(s) 586
PauI GCGCGC 1 cut(s) 247
PceI AGGCCT 2 cut(s) 328, 406
PciSI GCTCTTC 1 cut(s) 116
PctI GAATGC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 63
PkrI GCNGC 2 cut(s) 359, 594
PsiI TTATAA 1 cut(s) 372
Psp124BI GAGCTC 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 239, 523
PspGI CCWGG 2 cut(s) 239, 523
PstI CTGCAG 2 cut(s) 362, 597
PteI GCGCGC 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 592
RsaI GTAC 2 cut(s) 188, 389
RsaNI GTAC 2 cut(s) 187, 388
RseI CAYNNNNRTG 2 cut(s) 203, 315
SacI GAGCTC 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 116
SatI GCNGC 2 cut(s) 358, 593
Sau3AI GATC 1 cut(s) 623
ScaI AGTACT 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 241, 525
SduI GDGCHC 2 cut(s) 149, 635
SfaNI GCATC 2 cut(s) 227, 234
SfcI CTRYAG 2 cut(s) 358, 593
SmiMI CAYNNNNRTG 2 cut(s) 203, 315
Sse9I AATT 2 cut(s) 177, 551
SseBI AGGCCT 2 cut(s) 328, 406
SsiI CCGC 1 cut(s) 422
SspMI CTAG 5 cut(s) 354, 399, 408, 500, 509
SstI GAGCTC 1 cut(s) 635
StuI AGGCCT 2 cut(s) 328, 406
StyD4I CCNGG 2 cut(s) 239, 523
StyI CCWWGG 1 cut(s) 407
TaqI TCGA 1 cut(s) 323
TasI AATT 2 cut(s) 177, 551
TatI WGTACW 1 cut(s) 387
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 2 cut(s) 357, 592
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 3 cut(s) 152, 395, 564
TspRI CASTG 1 cut(s) 367
Van91I CCANNNNNTGG 1 cut(s) 63
XagI CCTNNNNNAGG 1 cut(s) 400
XmaJI CCTAGG 1 cut(s) 407
XspI CTAG 5 cut(s) 354, 399, 408, 500, 509
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.