AT4G30180

Transcription factor transcription regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012121
Physical Location & Seq
Forward (+)
14768784 .. 14769771
988 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30180.1

Sequence Viewer

Length: 477 bp
ATGGAGAGGCAAATCATAAACAGGAAGAAACGAGTGTTTTCTCTTGAACCAAACAAGAACCCTAGTGCAGTTTTCACGAGAAAATACACAAGCCACTTGGTTCCTGCACTCAAGAAGCTCAACATGAACAAGAACTCTTCAAAACAAACCGTGAAGCATGAAGTAGATATGGCTTTGGCTTTGTCTGCTCAAGAATTTGCATGGAGCCGTTTCTTGCTGCAGAAGCTATCGTCCTCATCGAATCCAACCACTACCACTAGTTCTTCTTCCGATGGAATTCGGATTCTTGAAAGACCCGATAAAGAAGGCGGAAACGAAGAAGGAGGGATAGAGGAGAGACTGAGGGAATTGAAGAAGCTTTTGCCAGGTGGGGAAGAGATGAATGTGGAAGAAATGTTGAGTGAGATTGGTAACTACATTAAATGTCTTGAGTTGCAGACGATTGCTCTCAAGTCCATTGTTCAAGATAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

8.99

Isoelectric Point (pI)

52.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 23 - 79 3.1e-22 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 309
AcsI RAATTY 2 cut(s) 194, 276
AfaI GTAC 1 cut(s) 472
AgsI TTSAA 5 cut(s) 47, 141, 290, 352, 464
AhlI ACTAGT 1 cut(s) 257
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 118, 226, 358
AluI AGCT 3 cut(s) 118, 226, 358
Alw26I GTCTC 1 cut(s) 331
ApeKI GCWGC 1 cut(s) 217
ApoI RAATTY 2 cut(s) 194, 276
BauI CACGAG 1 cut(s) 76
BbvI GCAGC 1 cut(s) 204
BccI CCATC 1 cut(s) 266
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 331
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 2 cut(s) 63, 258
BfmI CTRYAG 1 cut(s) 218
BisI GCNGC 1 cut(s) 218
BlsI GCNGC 1 cut(s) 219
BmcAI AGTACT 1 cut(s) 472
Bme1390I CCNGG 1 cut(s) 366
BmiI GGNNCC 2 cut(s) 102, 206
BmrFI CCNGG 1 cut(s) 366
BpuEI CTTGAG 4 cut(s) 95, 174, 434, 449
BseBI CCWGG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 1 cut(s) 204
BsgI GTGCAG 2 cut(s) 87, 90
BsmAI GTCTC 1 cut(s) 331
BspACI CCGC 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 333
BspLI GGNNCC 2 cut(s) 102, 206
BspMAI CTGCAG 1 cut(s) 222
BssSI CACGAG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 2 cut(s) 142, 369
BstDEI CTNAG 1 cut(s) 341
BstMAI GTCTC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 185, 223
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 471
CviAII CATG 3 cut(s) 124, 158, 201
CviJI RGCY 7 cut(s) 93, 118, 173, 179, 207, 226, 358
CviKI_1 RGCY 7 cut(s) 93, 118, 173, 179, 207, 226, 358
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 1 cut(s) 341
Eam1104I CTCTTC 2 cut(s) 142, 369
EarI CTCTTC 2 cut(s) 142, 369
EciI GGCGGA 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 3 cut(s) 127, 161, 204
FaiI YATR 5 cut(s) 17, 125, 159, 170, 202
FatI CATG 3 cut(s) 123, 157, 200
Fnu4HI GCNGC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 218
FspBI CTAG 2 cut(s) 63, 258
GluI GCNGC 1 cut(s) 218
Hin1II CATG 3 cut(s) 127, 161, 204
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 241, 283
Hpy188I TCNGA 2 cut(s) 271, 282
Hpy188III TCNNGA 7 cut(s) 44, 76, 112, 191, 287, 428, 464
HpyAV CCTTC 2 cut(s) 299, 314
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 5 cut(s) 68, 107, 200, 220, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 223
HpyF3I CTNAG 1 cut(s) 341
Hsp92II CATG 3 cut(s) 127, 161, 204
LmnI GCTCC 1 cut(s) 204
LpnPI CCDG 4 cut(s) 7, 117, 351, 378
Lsp1109I GCAGC 1 cut(s) 204
MaeI CTAG 2 cut(s) 63, 258
MaeIII GTNAC 1 cut(s) 410
MboII GAAGA 8 cut(s) 37, 129, 255, 258, 329, 364, 386, 401
MluCI AATT 3 cut(s) 194, 276, 347
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 4 cut(s) 244, 317, 325, 336
MseI TTAA 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 2 cut(s) 185, 223
NlaIII CATG 3 cut(s) 127, 161, 204
NlaIV GGNNCC 2 cut(s) 102, 206
PcsI WCGNNNNNNNCGW 1 cut(s) 236
PfeI GAWTC 2 cut(s) 241, 283
PkrI GCNGC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 102, 206
PstI CTGCAG 1 cut(s) 222
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 218
ScaI AGTACT 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 366
SetI ASST 4 cut(s) 120, 228, 360, 370
SfcI CTRYAG 1 cut(s) 218
SmlI CTYRAG 4 cut(s) 110, 189, 428, 449
SmoI CTYRAG 4 cut(s) 110, 189, 428, 449
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 3 cut(s) 194, 276, 347
SsiI CCGC 1 cut(s) 309
SspMI CTAG 2 cut(s) 63, 258
StyD4I CCNGG 1 cut(s) 364
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 239
TasI AATT 3 cut(s) 194, 276, 347
TatI WGTACW 1 cut(s) 470
TfiI GAWTC 2 cut(s) 241, 283
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 3 cut(s) 140, 174, 395
XapI RAATTY 2 cut(s) 194, 276
XspI CTAG 2 cut(s) 63, 258
ZrmI AGTACT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.