RLG00000024970

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012121
Physical Location & Seq
Forward (+)
40869977 .. 40870643
667 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024970

Sequence Viewer

Length: 576 bp
ATGATCCTTTTCGCCGTTATGCTCGATTCCAACAGCAGCAAAATACAAAAACCAAAACCAAATTCAGAGGTGCTCATAGAGTTTGGTACATACATAACTCTTCGGGTTATACCGGAGCCCCTTCGCGCTTCTTCTCCTCTAACAATCCAAATAGTTGGGTTCAACAATGGCCCCCGATCGCTGAGCTCCAACTCCCCAAATAGATCTAATCAGATATATGGGCTTTGGGATTGGGGGAATTTGAACCATTTGATCACCGTCGCGACGACCTTGCTGCACCATCACCACCGCGACGAAACCTCGCTGCGTCATCATCGCCGCGACGACCTTAAGTTCCGCCTTTTCCACTTCAAAATTCTGGTCAAGCACGGCGGAGTTCTTGGGGCGGAGCGCGTACTATTTCAACACAAGGGTGGAGGAGTTGGAGTTTGGATGCGGTGGAGGAGGCGATGGTGCAGAGTGCGGGCTATGGTGGCCATTGTAGATGATGAGGAGGAGGATGAAGAGAGTGCGATGAAGGAGAAGAGGACGGCTGATGCGAAGTTGCGAACCATTAGGGGCACATTAGGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.97

Weight (kDa)

10.12

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 126, 263, 291, 321, 393
AciI CCGC 7 cut(s) 289, 319, 337, 372, 386, 436, 463
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 4 cut(s) 61, 238, 354, 570
AfaI GTAC 2 cut(s) 88, 396
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 4 cut(s) 163, 244, 352, 404
AjuI GAANNNNNNNTTGG 2 cut(s) 46, 78
AleI CACNNNNGTG 1 cut(s) 411
AluBI AGCT 1 cut(s) 186
AluI AGCT 1 cut(s) 186
Alw21I GWGCWC 2 cut(s) 75, 188
AoxI GGCC 2 cut(s) 169, 474
ApeKI GCWGC 3 cut(s) 36, 274, 304
ApoI RAATTY 4 cut(s) 61, 238, 354, 570
ArsI GACNNNNNNTTYG 2 cut(s) 345, 377
AspLEI GCGC 2 cut(s) 128, 393
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 2 cut(s) 247, 275
BaeGI GKGCMC 1 cut(s) 563
BalI TGGCCA 1 cut(s) 476
BanII GRGCYC 2 cut(s) 120, 188
Bbv12I GWGCWC 2 cut(s) 75, 188
BbvI GCAGC 3 cut(s) 48, 261, 291
BccI CCATC 2 cut(s) 288, 444
BceAI ACGGC 2 cut(s) 385, 546
BcgI CGANNNNNNTGC 4 cut(s) 253, 256, 287, 290
BclI TGATCA 1 cut(s) 252
BfrI CTTAAG 1 cut(s) 329
BglII AGATCT 1 cut(s) 203
BisI GCNGC 4 cut(s) 37, 275, 305, 319
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 4 cut(s) 38, 276, 306, 320
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 117, 172
BmsI GCATC 2 cut(s) 423, 526
Bpu1102I GCTNAGC 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
BseGI GGATG 2 cut(s) 438, 505
BseMII CTCAG 1 cut(s) 173
BseRI GAGGAG 5 cut(s) 126, 432, 457, 506, 509
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 3 cut(s) 48, 261, 291
BsgI GTGCAG 2 cut(s) 260, 475
Bsh1236I CGCG 5 cut(s) 126, 263, 291, 321, 393
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 2 cut(s) 171, 476
BsiEI CGRYCG 1 cut(s) 179
BsiHKAI GWGCWC 2 cut(s) 75, 188
BsiSI CCGG 1 cut(s) 113
BsnI GGCC 2 cut(s) 171, 476
Bsp1286I GDGCHC 4 cut(s) 75, 120, 188, 563
Bsp143I GATC 4 cut(s) 3, 176, 203, 252
Bsp1720I GCTNAGC 1 cut(s) 182
Bsp68I TCGCGA 1 cut(s) 263
BspACI CCGC 7 cut(s) 289, 319, 337, 372, 386, 436, 463
BspANI GGCC 2 cut(s) 171, 476
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 5 cut(s) 126, 263, 291, 321, 393
BspLI GGNNCC 2 cut(s) 117, 172
BspTI CTTAAG 1 cut(s) 329
BssMI GATC 4 cut(s) 3, 176, 203, 252
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 3 cut(s) 105, 498, 518
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 2 cut(s) 438, 505
BstFNI CGCG 5 cut(s) 126, 263, 291, 321, 393
BstHHI GCGC 2 cut(s) 128, 393
BstKTI GATC 4 cut(s) 6, 179, 206, 255
BstMBI GATC 4 cut(s) 3, 176, 203, 252
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstSLI GKGCMC 1 cut(s) 563
BstUI CGCG 5 cut(s) 126, 263, 291, 321, 393
BstV1I GCAGC 3 cut(s) 48, 261, 291
BstX2I RGATCY 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 2 cut(s) 171, 476
BtgZI GCGATG 3 cut(s) 299, 463, 527
BtsCI GGATG 2 cut(s) 438, 505
BtuMI TCGCGA 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 465
CfoI GCGC 2 cut(s) 128, 393
Cfr13I GGNCC 1 cut(s) 170
CseI GACGC 1 cut(s) 296
Csp6I GTAC 2 cut(s) 87, 395
CviJI RGCY 7 cut(s) 118, 171, 186, 223, 467, 476, 533
CviKI_1 RGCY 7 cut(s) 118, 171, 186, 223, 467, 476, 533
CviQI GTAC 2 cut(s) 87, 395
DdeI CTNAG 1 cut(s) 182
DpnI GATC 4 cut(s) 5, 178, 205, 254
DpnII GATC 4 cut(s) 3, 176, 203, 252
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 3 cut(s) 105, 498, 518
EarI CTCTTC 3 cut(s) 105, 498, 518
EciI GGCGGA 3 cut(s) 326, 387, 401
Ecl136II GAGCTC 1 cut(s) 186
Eco24I GRGCYC 2 cut(s) 120, 188
Eco53kI GAGCTC 1 cut(s) 186
EcoICRI GAGCTC 1 cut(s) 186
EcoT38I GRGCYC 2 cut(s) 120, 188
FaiI YATR 8 cut(s) 20, 77, 91, 95, 110, 217, 219, 470
FauI CCCGC 1 cut(s) 456
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 4 cut(s) 37, 275, 305, 319
FokI GGATG 2 cut(s) 445, 512
FriOI GRGCYC 2 cut(s) 120, 188
Fsp4HI GCNGC 4 cut(s) 37, 275, 305, 319
GlaI GCGC 2 cut(s) 127, 392
GluI GCNGC 4 cut(s) 37, 275, 305, 319
HaeIII GGCC 2 cut(s) 171, 476
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 296
HhaI GCGC 2 cut(s) 128, 393
Hin6I GCGC 2 cut(s) 126, 391
HinP1I GCGC 2 cut(s) 126, 391
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 247, 275
Hpy188I TCNGA 2 cut(s) 67, 213
Hpy188III TCNNGA 1 cut(s) 262
Hpy99I CGWCG 4 cut(s) 263, 268, 296, 326
HpyAV CCTTC 2 cut(s) 131, 511
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 277, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 1 cut(s) 182
HspAI GCGC 2 cut(s) 126, 391
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 3, 176, 203, 252
LmnI GCTCC 3 cut(s) 115, 191, 388
LpnPI CCDG 2 cut(s) 126, 344
Lsp1109I GCAGC 3 cut(s) 48, 261, 291
LweI GCATC 2 cut(s) 423, 526
MalI GATC 4 cut(s) 5, 178, 205, 254
MboI GATC 4 cut(s) 3, 176, 203, 252
MboII GAAGA 4 cut(s) 92, 123, 515, 535
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 4 cut(s) 75, 120, 188, 563
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 4 cut(s) 61, 238, 354, 570
MluNI TGGCCA 1 cut(s) 476
MmeI TCCRAC 3 cut(s) 54, 213, 403
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
MseI TTAA 2 cut(s) 330, 574
MslI CAYNNNNRTG 1 cut(s) 411
Msp20I TGGCCA 1 cut(s) 476
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 1 cut(s) 113
MvnI CGCG 5 cut(s) 126, 263, 291, 321, 393
MwoI GCNNNNNNNGC 1 cut(s) 473
NdeII GATC 4 cut(s) 3, 176, 203, 252
NlaIV GGNNCC 2 cut(s) 117, 172
NruI TCGCGA 1 cut(s) 263
OliI CACNNNNGTG 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 536
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 4 cut(s) 38, 276, 306, 320
Ple19I CGATCG 1 cut(s) 179
Psp124BI GAGCTC 1 cut(s) 188
PspN4I GGNNCC 2 cut(s) 117, 172
PspPI GGNCC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 203
PvuI CGATCG 1 cut(s) 179
RruI TCGCGA 1 cut(s) 263
RsaI GTAC 2 cut(s) 88, 396
RsaNI GTAC 2 cut(s) 87, 395
RseI CAYNNNNRTG 1 cut(s) 411
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 330, 574
SatI GCNGC 4 cut(s) 37, 275, 305, 319
Sau3AI GATC 4 cut(s) 3, 176, 203, 252
Sau96I GGNCC 1 cut(s) 170
SduI GDGCHC 4 cut(s) 75, 120, 188, 563
SetI ASST 5 cut(s) 72, 188, 272, 302, 330
SfaNI GCATC 2 cut(s) 423, 526
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 4 cut(s) 61, 238, 354, 570
SsiI CCGC 7 cut(s) 289, 319, 337, 372, 386, 436, 463
SstI GAGCTC 1 cut(s) 188
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 24
TasI AATT 4 cut(s) 61, 238, 354, 570
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 330, 574
Tru9I TTAA 2 cut(s) 330, 574
TseI GCWGC 3 cut(s) 36, 274, 304
TspDTI ATGAA 2 cut(s) 516, 530
Vha464I CTTAAG 1 cut(s) 329
XapI RAATTY 4 cut(s) 61, 238, 354, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.