Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014690.1

Orthogroup ID

OG0012121

Physical Location & Seq

Genomic Coordinates Reverse (-)

2640 .. 3272

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014690.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggtgatgatgaggcaaatgggtaaacatccgaaacgtgtttactctctgcaacccaacagatgggtgcgttcttctgtgtttgcaagaagatatgtcaattacttattgccagctctgaagaagaacaaagaaaacgaggagtgctgtaactctgatattcatgagttggagaaaattgttgggtaccaagtgaacatggcaatggtgctgtctgcatcaacgcagcgcgagtttgcctggatgcgcgctttgaaacagaagctccaaacaaattgtctcaatggtaagagctttctgctacctcatcctcgtgtttcgaagcctttgagttttctgcaaaaccctagctgcagtgcaagttataagaagaagaagtactgctcctccaatatgcctagtacggtgagaccgcatttccgagcaagaactttagctatcacggaaaatgcaaagaaagacgaagaggcagagatgactagcaggaagttggtatcactaagaaggcttttaccaggagggaatgagatggttgacgatgaattgctggaagaagtaggaagttatgtaacttgtctccagctgcaggtgactattcttcggtgtctagtggggatcgaactcgttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

24.17

Weight (kDa)

9.56

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18969 AT4G30180
fragaria_vesca	FvH4_4g07800
prunus_persica	Prupe.1G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0400891
rosa_laevigata	RLG00000003757 RLG00000009169 RLG00000024970
rosa_multiflora	Rmu_sc0014690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272550 Rroxscaffold_5G00345790
rosa_rugosa	Rorug04G0026900
rosa_samantha	Rh4BG099800 Rh4CG113000 Rh4DG096800 Rh6DG346900 Rh7BG077700 Rh7DG290900
rosa_wichuraiana	Rw4G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	366
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
Acc65I	GGTACC	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	63
AccII	CGCG	2 cut(s)	231, 249
AciI	CCGC	1 cut(s)	413
AclWI	GGATC	1 cut(s)	623
AcuI	CTGAAG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	188, 380, 403
AfiI	CCNNNNNNNGG	2 cut(s)	63, 586
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	239, 514
AluBI	AGCT	6 cut(s)	116, 265, 294, 351, 437, 583
AluI	AGCT	6 cut(s)	116, 265, 294, 351, 437, 583
Alw26I	GTCTC	3 cut(s)	284, 403, 581
AlwI	GGATC	1 cut(s)	623
ApeKI	GCWGC	3 cut(s)	226, 351, 583
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
Asp718I	GGTACC	1 cut(s)	186
AspLEI	GCGC	3 cut(s)	231, 249, 251
AsuHPI	GGTGA	3 cut(s)	16, 418, 601
AsuII	TTCGAA	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	186
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BauI	CACGAG	1 cut(s)	312
BbvI	GCAGC	3 cut(s)	238, 338, 570
BccI	CCATC	2 cut(s)	57, 523
BciT130I	CCWGG	2 cut(s)	241, 516
BcoDI	GTCTC	3 cut(s)	284, 403, 581
BfaI	CTAG	4 cut(s)	348, 399, 480, 608
BfmI	CTRYAG	2 cut(s)	352, 584
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	3 cut(s)	227, 352, 584
BlsI	GCNGC	3 cut(s)	228, 353, 585
BmcAI	AGTACT	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	241, 516
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	241, 516
BmsI	GCATC	2 cut(s)	227, 234
BpmI	CTGGAG	1 cut(s)	563
Bpu14I	TTCGAA	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	403
BsaXI	ACNNNNNCTCC	4 cut(s)	249, 279, 371, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 586
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	241, 516
BseGI	GGATG	3 cut(s)	28, 249, 307
BseLI	CCNNNNNNNGG	2 cut(s)	63, 586
BseMI	GCAATG	1 cut(s)	210
BsePI	GCGCGC	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	155, 376
BseXI	GCAGC	3 cut(s)	238, 338, 570
Bsh1236I	CGCG	2 cut(s)	231, 249
BshNI	GGYRCC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	63, 586
BsmAI	GTCTC	3 cut(s)	284, 403, 581
Bso31I	GGTCTC	1 cut(s)	403
Bsp119I	TTCGAA	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	615
BspACI	CCGC	1 cut(s)	413
BspFNI	CGCG	2 cut(s)	231, 249
BspHI	TCATGA	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	188
BspMAI	CTGCAG	2 cut(s)	356, 588
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	623
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	186
BspTNI	GGTCTC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	210
BssHII	GCGCGC	1 cut(s)	247
BssMI	GATC	1 cut(s)	615
BssSI	CACGAG	1 cut(s)	312
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	2 cut(s)	241, 516
Bst4CI	ACNGT	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	459
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	114, 249
BstDEI	CTNAG	1 cut(s)	500
BstF5I	GGATG	3 cut(s)	28, 249, 307
BstFNI	CGCG	2 cut(s)	231, 249
BstHHI	GCGC	3 cut(s)	231, 249, 251
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	3 cut(s)	284, 403, 581
BstMBI	GATC	1 cut(s)	615
BstNI	CCWGG	2 cut(s)	241, 516
BstSCI	CCNGG	2 cut(s)	239, 514
BstSFI	CTRYAG	2 cut(s)	352, 584
BstUI	CGCG	2 cut(s)	231, 249
BstV1I	GCAGC	3 cut(s)	238, 338, 570
BtsCI	GGATG	3 cut(s)	28, 249, 307
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	2 cut(s)	114, 249
CciI	TCATGA	1 cut(s)	163
CfoI	GCGC	3 cut(s)	231, 249, 251
Csp6I	GTAC	3 cut(s)	187, 379, 402
CviAII	CATG	2 cut(s)	164, 199
CviJI	RGCY	8 cut(s)	116, 265, 294, 325, 351, 437, 508, 583
CviKI_1	RGCY	8 cut(s)	116, 265, 294, 325, 351, 437, 508, 583
CviQI	GTAC	3 cut(s)	187, 379, 402
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco31I	GGTCTC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	239, 514
FaeI	CATG	2 cut(s)	167, 202
FaiI	YATR	6 cut(s)	96, 165, 200, 366, 395, 567
FatI	CATG	2 cut(s)	163, 198
Fnu4HI	GCNGC	3 cut(s)	227, 352, 584
FokI	GGATG	3 cut(s)	15, 256, 294
Fsp4HI	GCNGC	3 cut(s)	227, 352, 584
FspBI	CTAG	4 cut(s)	348, 399, 480, 608
GlaI	GCGC	3 cut(s)	230, 248, 250
GluI	GCNGC	3 cut(s)	227, 352, 584
GsuI	CTGGAG	1 cut(s)	563
HhaI	GCGC	3 cut(s)	231, 249, 251
Hin1II	CATG	2 cut(s)	167, 202
Hin6I	GCGC	3 cut(s)	229, 247, 249
HinP1I	GCGC	3 cut(s)	229, 247, 249
HincII	GTYRAC	1 cut(s)	535
HindII	GTYRAC	1 cut(s)	535
HphI	GGTGA	3 cut(s)	16, 418, 601
Hpy166II	GTNNAC	4 cut(s)	26, 43, 196, 535
Hpy188I	TCNGA	4 cut(s)	33, 120, 157, 422
Hpy188III	TCNNGA	1 cut(s)	164
Hpy8I	GTNNAC	4 cut(s)	26, 43, 196, 535
HpyAV	CCTTC	1 cut(s)	498
HpyCH4III	ACNGT	1 cut(s)	406
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	8 cut(s)	52, 86, 218, 340, 354, 359, 452, 586
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	1 cut(s)	37
Hsp92II	CATG	2 cut(s)	167, 202
HspAI	GCGC	3 cut(s)	229, 247, 249
KpnI	GGTACC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	615
LmnI	GCTCC	2 cut(s)	270, 389
LpnPI	CCDG	9 cut(s)	126, 226, 253, 469, 501, 528, 533, 572, 593
Lsp1109I	GCAGC	3 cut(s)	238, 338, 570
LweI	GCATC	2 cut(s)	227, 234
MaeI	CTAG	4 cut(s)	348, 399, 480, 608
MaeII	ACGT	1 cut(s)	37
MaeIII	GTNAC	3 cut(s)	149, 568, 589
MalI	GATC	1 cut(s)	617
MboI	GATC	1 cut(s)	615
MboII	GAAGA	9 cut(s)	66, 102, 133, 136, 382, 385, 476, 563, 590
MluCI	AATT	4 cut(s)	100, 177, 274, 542
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	7 cut(s)	6, 133, 315, 321, 397, 460, 512
MslI	CAYNNNNRTG	2 cut(s)	203, 312
MspA1I	CMGCKG	1 cut(s)	583
MspR9I	CCNGG	2 cut(s)	241, 516
MvaI	CCWGG	2 cut(s)	241, 516
MvnI	CGCG	2 cut(s)	231, 249
NdeII	GATC	1 cut(s)	615
NlaIII	CATG	2 cut(s)	167, 202
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	589
NspV	TTCGAA	1 cut(s)	320
PagI	TCATGA	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	577
PauI	GCGCGC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	63
PkrI	GCNGC	3 cut(s)	228, 353, 585
PsiI	TTATAA	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	239, 514
PspGI	CCWGG	2 cut(s)	239, 514
PspN4I	GGNNCC	1 cut(s)	188
PstI	CTGCAG	2 cut(s)	356, 588
PteI	GCGCGC	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	3 cut(s)	188, 380, 403
RsaNI	GTAC	3 cut(s)	187, 379, 402
RseI	CAYNNNNRTG	2 cut(s)	203, 312
SatI	GCNGC	3 cut(s)	227, 352, 584
Sau3AI	GATC	1 cut(s)	615
ScaI	AGTACT	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	241, 516
SetI	ASST	9 cut(s)	40, 118, 267, 296, 307, 353, 439, 585, 591
SfaNI	GCATC	2 cut(s)	227, 234
SfcI	CTRYAG	2 cut(s)	352, 584
SfuI	TTCGAA	1 cut(s)	320
SmiMI	CAYNNNNRTG	2 cut(s)	203, 312
Sse9I	AATT	4 cut(s)	100, 177, 274, 542
SsiI	CCGC	1 cut(s)	413
SspMI	CTAG	4 cut(s)	348, 399, 480, 608
StyD4I	CCNGG	2 cut(s)	239, 514
TaaI	ACNGT	1 cut(s)	406
TaiI	ACGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	320, 618
TasI	AATT	4 cut(s)	100, 177, 274, 542
TatI	WGTACW	1 cut(s)	378
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	3 cut(s)	226, 351, 583
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	152, 555
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	63
XspI	CTAG	4 cut(s)	348, 399, 480, 608
ZrmI	AGTACT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.