Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012121

Physical Location & Seq

Genomic Coordinates Forward (+)

52334893 .. 52335591

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGAGTTCTTCCCCAGCTGCTGGCAAACCAACCAAACAAACAGGTGACAACATCAGACCACCCAAACTCAGGTTCCAAGAACATGGATCTGCCTACCACCGTGCTAAACTCCTCCGTCCCTACTGTCCTCCGTCGTCTAAAACCCAGATTCCGGCGAGCCTCACCAACACGCCTCTATCTGCCCAACACACCTCGATCTGCCGTTACCTAGATAGACAACCAAGTCCCTCGCCGGCAACAAGCCATAAAACGCCTGCAACATCACACCAAGAACTGAGGGTCACCATGTATCCACCAGAATCCTCTACACCGTTGTGCTCGATTCTAAGATCCGATAAGAAATGCCACCGATCAGATATATGGGCTTTGGGATTGGCGGAATTTGAACCATTTGATCAACGCCGTGACAACCTTGTTGGGTCATCACCACCGCGACGACCTCACTGCATCATCACTGCCGCGACGACCTCGCTGCATCATCACCGCTCCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

166

Amino Acids

18.32

Weight (kDa)

9.92

Isoelectric Point (pI)

79.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18969 AT4G30180
fragaria_vesca	FvH4_4g07800
prunus_persica	Prupe.1G081900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0400891
rosa_laevigata	RLG00000003757 RLG00000009169 RLG00000024970
rosa_multiflora	Rmu_sc0014690.1_g000002
rosa_roxburghii	Rroxscaffold_3G00272550 Rroxscaffold_5G00345790
rosa_rugosa	Rorug04G0026900
rosa_samantha	Rh4BG099800 Rh4CG113000 Rh4DG096800 Rh6DG346900 Rh7BG077700 Rh7DG290900
rosa_wichuraiana	Rw4G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	20
AccBSI	CCGCTC	1 cut(s)	486
AccII	CGCG	2 cut(s)	433, 461
AciI	CCGC	4 cut(s)	377, 431, 459, 484
AclWI	GGATC	2 cut(s)	94, 324
AcsI	RAATTY	1 cut(s)	380
AfiI	CCNNNNNNNGG	3 cut(s)	20, 69, 151
AgsI	TTSAA	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AleI	CACNNNNGTG	1 cut(s)	313
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	94, 324
AlwNI	CAGNNNCTG	1 cut(s)	20
ApeKI	GCWGC	2 cut(s)	17, 472
ApoI	RAATTY	1 cut(s)	380
AsuHPI	GGTGA	5 cut(s)	56, 154, 274, 417, 473
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	4, 459
BceAI	ACGGC	2 cut(s)	186, 387
BcgI	CGANNNNNNTGC	4 cut(s)	426, 454, 460, 488
BciVI	GTATCC	1 cut(s)	300
BclI	TGATCA	1 cut(s)	394
BfaI	CTAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	300
BisI	GCNGC	3 cut(s)	18, 459, 473
BlsI	GCNGC	3 cut(s)	19, 460, 474
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	2 cut(s)	456, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 69, 151
Bse118I	RCCGGY	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	20, 69, 151
BseMII	CTCAG	2 cut(s)	82, 266
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	4, 459
BseYI	CCCAGC	1 cut(s)	13
Bsh1236I	CGCG	2 cut(s)	433, 461
BsiHKAI	GWGCWC	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	152, 233
BslFI	GGGAC	2 cut(s)	102, 210
BslI	CCNNNNNNNGG	3 cut(s)	20, 69, 151
BsmFI	GGGAC	2 cut(s)	102, 210
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	86, 195, 329, 350, 394
BspACI	CCGC	4 cut(s)	377, 431, 459, 484
BspCNI	CTCAG	2 cut(s)	81, 267
BspFNI	CGCG	2 cut(s)	433, 461
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	2 cut(s)	94, 324
BsrBI	CCGCTC	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssMI	GATC	5 cut(s)	86, 195, 329, 350, 394
Bst4CI	ACNGT	3 cut(s)	101, 125, 312
BstC8I	GCNNGC	4 cut(s)	22, 157, 234, 255
BstDEI	CTNAG	3 cut(s)	68, 275, 326
BstEII	GGTNACC	1 cut(s)	280
BstFNI	CGCG	2 cut(s)	433, 461
BstKTI	GATC	5 cut(s)	89, 198, 332, 353, 397
BstMBI	GATC	5 cut(s)	86, 195, 329, 350, 394
BstPI	GGTNACC	1 cut(s)	280
BstUI	CGCG	2 cut(s)	433, 461
BstV1I	GCAGC	2 cut(s)	4, 459
BstX2I	RGATCY	2 cut(s)	86, 329
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	2 cut(s)	86, 329
BsuI	GTATCC	1 cut(s)	300
BtsI	GCAGTG	2 cut(s)	442, 453
BtsIMutI	CAGTG	2 cut(s)	442, 453
Cac8I	GCNNGC	4 cut(s)	22, 157, 234, 255
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	232
CviAII	CATG	2 cut(s)	83, 286
CviJI	RGCY	4 cut(s)	17, 159, 243, 365
CviKI_1	RGCY	4 cut(s)	17, 159, 243, 365
DdeI	CTNAG	3 cut(s)	68, 275, 326
DpnI	GATC	5 cut(s)	88, 197, 331, 352, 396
DpnII	GATC	5 cut(s)	86, 195, 329, 350, 394
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	392
Eco91I	GGTNACC	1 cut(s)	280
EcoO65I	GGTNACC	1 cut(s)	280
FaeI	CATG	2 cut(s)	86, 289
FaiI	YATR	5 cut(s)	84, 246, 287, 359, 361
FaqI	GGGAC	2 cut(s)	102, 210
FatI	CATG	2 cut(s)	82, 285
FbaI	TGATCA	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	18, 459, 473
Fsp4HI	GCNGC	3 cut(s)	18, 459, 473
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	3 cut(s)	18, 459, 473
GsaI	CCCAGC	1 cut(s)	17
HapII	CCGG	2 cut(s)	152, 233
Hin1II	CATG	2 cut(s)	86, 289
HinfI	GANTC	3 cut(s)	148, 299, 322
HpaII	CCGG	2 cut(s)	152, 233
HphI	GGTGA	5 cut(s)	56, 154, 274, 417, 473
Hpy188I	TCNGA	3 cut(s)	56, 334, 355
Hpy99I	CGWCG	3 cut(s)	136, 438, 466
HpyCH4III	ACNGT	3 cut(s)	101, 125, 312
HpyCH4V	TGCA	3 cut(s)	257, 447, 475
HpyF3I	CTNAG	3 cut(s)	68, 275, 326
Hsp92II	CATG	2 cut(s)	86, 289
KroI	GCCGGC	1 cut(s)	232
KroNI	GCCGGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	5 cut(s)	86, 195, 329, 350, 394
LmnI	GCTCC	1 cut(s)	491
LpnPI	CCDG	9 cut(s)	6, 27, 27, 55, 158, 165, 246, 267, 309
Lsp1109I	GCAGC	2 cut(s)	4, 459
LweI	GCATC	2 cut(s)	456, 484
MaeI	CTAG	1 cut(s)	209
MaeIII	GTNAC	4 cut(s)	44, 203, 280, 404
MalI	GATC	5 cut(s)	88, 197, 331, 352, 396
MbiI	CCGCTC	1 cut(s)	486
MboI	GATC	5 cut(s)	86, 195, 329, 350, 394
MflI	RGATCY	2 cut(s)	86, 329
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	17
MspI	CCGG	2 cut(s)	152, 233
MvnI	CGCG	2 cut(s)	433, 461
NaeI	GCCGGC	1 cut(s)	234
NdeII	GATC	5 cut(s)	86, 195, 329, 350, 394
NgoMIV	GCCGGC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	86, 289
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	3 cut(s)	44, 280, 404
OliI	CACNNNNGTG	1 cut(s)	313
PdiI	GCCGGC	1 cut(s)	234
PfeI	GAWTC	3 cut(s)	148, 299, 322
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	3 cut(s)	19, 460, 474
PspEI	GGTNACC	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	13
PspN4I	GGNNCC	1 cut(s)	74
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	86, 329
PvuII	CAGCTG	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	313
SatI	GCNGC	3 cut(s)	18, 459, 473
Sau3AI	GATC	5 cut(s)	86, 195, 329, 350, 394
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	8 cut(s)	19, 46, 74, 194, 210, 414, 442, 470
SfaNI	GCATC	2 cut(s)	456, 484
SmiMI	CAYNNNNRTG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	380
SsiI	CCGC	4 cut(s)	377, 431, 459, 484
SspMI	CTAG	1 cut(s)	209
TaaI	ACNGT	3 cut(s)	101, 125, 312
TaqI	TCGA	2 cut(s)	194, 320
TasI	AATT	1 cut(s)	380
TauI	GCSGC	1 cut(s)	461
TfiI	GAWTC	3 cut(s)	148, 299, 322
TscAI	CASTG	2 cut(s)	449, 460
TseFI	GTSAC	3 cut(s)	44, 280, 404
TseI	GCWGC	2 cut(s)	17, 472
Tsp45I	GTSAC	3 cut(s)	44, 280, 404
TspGWI	ACGGA	2 cut(s)	104, 120
TspRI	CASTG	2 cut(s)	449, 460
Van91I	CCANNNNNTGG	1 cut(s)	20
XapI	RAATTY	1 cut(s)	380
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.