Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Forward (+)

8985959 .. 8987302

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G20880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCTACTGCTAAGAACAAGGGAAAATCAATCAGGGTCCTTGGTACCAGTGAAGCAGAGAAAAAGGATGAGATGGAGTTGGAGGAGGAGTTCCAGTTTAGTAGCGGCAAGTATAAAGATTCGGGTCCTGGCTCGGACATGTGGTTAGGAGATGCTTCCTCTACGTCTCCAAGAAGTCTTAGGAAGACTAGAACCTTTGACCGACATAATCCCTATCTCGTATCTTCTTATGCTACTCCTCAGCCGCCAACAACAACTACATGCTCTGTCTCTTTTCCCTTTTACCTCCCTCCAGCGATTCAAAATCAACAACGATTTTTACACCCGAATGACCCTTCAGGACAAAGACAGCAACAAATGATCTCGTTTGATCCTCAACAACAGGTGCAACCATATGTTGCACAACAGCAGCAACAACAACAACATCTATTGCAGTACTGGAGAGACATTCTGAAGCTGAGTCCGAGCGGAAGAATGATGATGATGAACATGTTAAGACAAGAAAGCGATCTGCCACTGACGAGGCCACCGGTTCAACCCTTCAGCGCCACCAAGCTATATAGAGGTGTCAGGCAACGCCACTGGGGAAAATGGGTTGCCGAGATCCGTAAGCCACGAAACAGGACACGTCTCTGGCTAGGGACATTCGATACAGCAGAAGAAGCCGCCATGGCCTACGACCGCGAGGCCTTCAAGTTGAGGGGAGAGACCGCTAGGCTCAATTTCCCTGAACTTTTTCTCAATAAACAAGAGCCAACTCCCGTGCATCAGAAACAATGTGAGACGGGGACTACTAGTGAAGACTCAAGCAGAAGAGGAGAGGATGATTCGAGCACGGCATTGGCAGTAGGAGGGGTGAGTGAGGAGACGGGTTGGGCTGAGGCATGGTTCAATGCAATTCCAGAGGAATGGGGACCTGGAAGCCCTCTATGGGATGATTACCACTTTCCCATTTCTAACCATAAGGACGATCTTGACGCCACACAAAACTCTTCTTCTGATACAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

336

Amino Acids

38.4

Weight (kDa)

6.03

Isoelectric Point (pI)

59.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	186 - 235	9.3e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	44
AccB1I	GGYRCC	1 cut(s)	44
AccBSI	CCGCTC	1 cut(s)	468
AccII	CGCG	1 cut(s)	684
AciI	CCGC	6 cut(s)	105, 245, 468, 666, 682, 711
AclWI	GGATC	2 cut(s)	365, 598
AcuI	CTGAAG	3 cut(s)	321, 473, 526
AcyI	GRCGYC	1 cut(s)	978
AfaI	GTAC	2 cut(s)	46, 437
AfiI	CCNNNNNNNGG	1 cut(s)	931
AflIII	ACRYGT	3 cut(s)	138, 489, 626
AgeI	ACCGGT	1 cut(s)	529
AgsI	TTSAA	4 cut(s)	302, 536, 694, 892
AhlI	ACTAGT	1 cut(s)	794
AjiI	CACGTC	1 cut(s)	629
AjnI	CCWGG	2 cut(s)	127, 916
AloI	GAACNNNNNNTCC	2 cut(s)	74, 106
AluBI	AGCT	2 cut(s)	457, 556
AluI	AGCT	2 cut(s)	457, 556
Alw21I	GWGCWC	1 cut(s)	836
Alw26I	GTCTC	7 cut(s)	171, 274, 438, 635, 701, 776, 860
AlwI	GGATC	2 cut(s)	365, 598
AoxI	GGCC	3 cut(s)	524, 672, 687
ApeKI	GCWGC	1 cut(s)	409
AsiGI	ACCGGT	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	735
Asp718I	GGTACC	1 cut(s)	44
AspLEI	GCGC	1 cut(s)	548
AspS9I	GGNCC	3 cut(s)	37, 125, 914
AsuHPI	GGTGA	1 cut(s)	868
AvaII	GGWCC	3 cut(s)	37, 125, 914
BanI	GGYRCC	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	191, 807
Bbv12I	GWGCWC	1 cut(s)	836
BbvCI	CCTCAGC	2 cut(s)	240, 879
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	852
BciT130I	CCWGG	2 cut(s)	129, 918
BcoDI	GTCTC	7 cut(s)	171, 274, 438, 635, 701, 776, 860
BcuI	ACTAGT	1 cut(s)	794
BfaI	CTAG	4 cut(s)	189, 638, 714, 795
BfoI	RGCGCY	1 cut(s)	549
BglI	GCCNNNNNGGC	1 cut(s)	671
BisI	GCNGC	4 cut(s)	106, 245, 410, 666
BlsI	GCNGC	4 cut(s)	107, 246, 411, 667
BmcAI	AGTACT	1 cut(s)	437
Bme1390I	CCNGG	2 cut(s)	129, 918
Bme18I	GGWCC	3 cut(s)	37, 125, 914
BmgBI	CACGTC	1 cut(s)	629
BmgT120I	GGNCC	3 cut(s)	37, 125, 914
BmiI	GGNNCC	4 cut(s)	38, 46, 126, 915
BmrFI	CCNGG	2 cut(s)	129, 918
BmrI	ACTGGG	1 cut(s)	592
BmsI	GCATC	2 cut(s)	142, 775
BmuI	ACTGGG	1 cut(s)	592
BpiI	GAAGAC	2 cut(s)	191, 807
BpmI	CTGGAG	2 cut(s)	276, 460
Bpu10I	CCTNAGC	2 cut(s)	240, 879
BpuEI	CTTGAG	1 cut(s)	790
BsaHI	GRCGYC	1 cut(s)	978
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	40, 669
BsaWI	WCCGGW	1 cut(s)	529
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 80, 104, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	931
Bse118I	RCCGGY	1 cut(s)	529
Bse1I	ACTGG	4 cut(s)	48, 94, 443, 587
BseBI	CCWGG	2 cut(s)	129, 918
BseDI	CCNNGG	2 cut(s)	40, 669
BseGI	GGATG	3 cut(s)	73, 829, 940
BseLI	CCNNNNNNNGG	1 cut(s)	931
BseMII	CTCAG	3 cut(s)	254, 449, 870
BseNI	ACTGG	4 cut(s)	48, 94, 443, 587
BseRI	GAGGAG	5 cut(s)	98, 101, 228, 831, 878
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	684
Bsh1285I	CGRYCG	1 cut(s)	682
BshFI	GGCC	3 cut(s)	526, 674, 689
BshNI	GGYRCC	1 cut(s)	44
BshTI	ACCGGT	1 cut(s)	529
BsiEI	CGRYCG	1 cut(s)	682
BsiHKAI	GWGCWC	1 cut(s)	836
BsiSI	CCGG	1 cut(s)	530
BslFI	GGGAC	3 cut(s)	655, 802, 927
BslI	CCNNNNNNNGG	1 cut(s)	931
BsmAI	GTCTC	7 cut(s)	171, 274, 438, 635, 701, 776, 860
BsmBI	CGTCTC	4 cut(s)	171, 635, 776, 860
BsmFI	GGGAC	3 cut(s)	655, 802, 927
BsnI	GGCC	3 cut(s)	526, 674, 689
Bso31I	GGTCTC	1 cut(s)	701
Bsp1286I	GDGCHC	1 cut(s)	836
Bsp143I	GATC	5 cut(s)	360, 370, 508, 603, 970
Bsp19I	CCATGG	1 cut(s)	669
BspACI	CCGC	6 cut(s)	105, 245, 468, 666, 682, 711
BspANI	GGCC	3 cut(s)	526, 674, 689
BspCNI	CTCAG	3 cut(s)	253, 450, 871
BspFNI	CGCG	1 cut(s)	684
BspLI	GGNNCC	4 cut(s)	38, 46, 126, 915
BspPI	GGATC	2 cut(s)	365, 598
BspT107I	GGYRCC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	701
BsrBI	CCGCTC	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	529
BsrI	ACTGG	4 cut(s)	48, 94, 443, 587
BssAI	RCCGGY	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	40, 669
BssMI	GATC	5 cut(s)	360, 370, 508, 603, 970
BssNI	GRCGYC	1 cut(s)	978
BssT1I	CCWWGG	2 cut(s)	40, 669
Bst2UI	CCWGG	2 cut(s)	129, 918
Bst6I	CTCTTC	2 cut(s)	808, 997
BstACI	GRCGYC	1 cut(s)	978
BstDEI	CTNAG	5 cut(s)	12, 179, 240, 458, 879
BstDSI	CCRYGG	1 cut(s)	669
BstF5I	GGATG	3 cut(s)	73, 829, 940
BstFNI	CGCG	1 cut(s)	684
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	548
BstKTI	GATC	5 cut(s)	363, 373, 511, 606, 973
BstMAI	GTCTC	7 cut(s)	171, 274, 438, 635, 701, 776, 860
BstMBI	GATC	5 cut(s)	360, 370, 508, 603, 970
BstMCI	CGRYCG	1 cut(s)	682
BstMWI	GCNNNNNNNGC	2 cut(s)	662, 671
BstNI	CCWGG	2 cut(s)	129, 918
BstNSI	RCATGY	3 cut(s)	142, 264, 493
BstSCI	CCNGG	2 cut(s)	127, 916
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	421
BstV2I	GAAGAC	2 cut(s)	191, 807
BstX2I	RGATCY	1 cut(s)	603
BstXI	CCANNNNNNTGG	1 cut(s)	909
BstYI	RGATCY	1 cut(s)	603
BsuRI	GGCC	3 cut(s)	526, 674, 689
BtgI	CCRYGG	1 cut(s)	669
BtrI	CACGTC	1 cut(s)	629
BtsCI	GGATG	3 cut(s)	73, 829, 940
BtsIMutI	CAGTG	3 cut(s)	55, 515, 580
CfoI	GCGC	1 cut(s)	548
Cfr10I	RCCGGY	1 cut(s)	529
Cfr13I	GGNCC	3 cut(s)	37, 125, 914
CseI	GACGC	1 cut(s)	986
Csp6I	GTAC	2 cut(s)	45, 436
CspAI	ACCGGT	1 cut(s)	529
CviAII	CATG	5 cut(s)	139, 261, 490, 670, 885
CviQI	GTAC	2 cut(s)	45, 436
DdeI	CTNAG	5 cut(s)	12, 179, 240, 458, 879
DpnI	GATC	5 cut(s)	362, 372, 510, 605, 972
DpnII	GATC	5 cut(s)	360, 370, 508, 603, 970
Eam1104I	CTCTTC	2 cut(s)	808, 997
EarI	CTCTTC	2 cut(s)	808, 997
Eco130I	CCWWGG	2 cut(s)	40, 669
Eco147I	AGGCCT	1 cut(s)	689
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	3 cut(s)	37, 125, 914
Eco57I	CTGAAG	3 cut(s)	321, 473, 526
EcoO109I	RGGNCCY	3 cut(s)	37, 125, 914
EcoRII	CCWGG	2 cut(s)	127, 916
EcoT14I	CCWWGG	2 cut(s)	40, 669
ErhI	CCWWGG	2 cut(s)	40, 669
Esp3I	CGTCTC	4 cut(s)	171, 635, 776, 860
FaeI	CATG	5 cut(s)	142, 264, 493, 673, 888
FaqI	GGGAC	3 cut(s)	655, 802, 927
FatI	CATG	5 cut(s)	138, 260, 489, 669, 884
FauNDI	CATATG	1 cut(s)	394
Fnu4HI	GCNGC	4 cut(s)	106, 245, 410, 666
FokI	GGATG	3 cut(s)	80, 836, 947
Fsp4HI	GCNGC	4 cut(s)	106, 245, 410, 666
FspBI	CTAG	4 cut(s)	189, 638, 714, 795
GlaI	GCGC	1 cut(s)	547
GluI	GCNGC	4 cut(s)	106, 245, 410, 666
GsuI	CTGGAG	2 cut(s)	276, 460
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	3 cut(s)	526, 674, 689
HapII	CCGG	1 cut(s)	530
HgaI	GACGC	1 cut(s)	986
HhaI	GCGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	978
Hin1II	CATG	5 cut(s)	142, 264, 493, 673, 888
Hin6I	GCGC	1 cut(s)	546
HinP1I	GCGC	1 cut(s)	546
HinfI	GANTC	5 cut(s)	119, 298, 460, 803, 827
HpaII	CCGG	1 cut(s)	530
HphI	GGTGA	1 cut(s)	868
Hpy188I	TCNGA	5 cut(s)	136, 453, 465, 771, 1000
Hpy188III	TCNNGA	3 cut(s)	339, 902, 974
HpyAV	CCTTC	3 cut(s)	345, 550, 700
HpyCH4IV	ACGT	2 cut(s)	164, 628
HpyCH4V	TGCA	5 cut(s)	388, 401, 433, 766, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	662, 671
HpyF3I	CTNAG	5 cut(s)	12, 179, 240, 458, 879
HpySE526I	ACGT	2 cut(s)	164, 628
Hsp92I	GRCGYC	1 cut(s)	978
Hsp92II	CATG	5 cut(s)	142, 264, 493, 673, 888
HspAI	GCGC	1 cut(s)	546
KpnI	GGTACC	1 cut(s)	48
Kzo9I	GATC	5 cut(s)	360, 370, 508, 603, 970
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	2 cut(s)	142, 775
MaeI	CTAG	4 cut(s)	189, 638, 714, 795
MaeII	ACGT	2 cut(s)	164, 628
MalI	GATC	5 cut(s)	362, 372, 510, 605, 972
MbiI	CCGCTC	1 cut(s)	468
MboI	GATC	5 cut(s)	360, 370, 508, 603, 970
MboII	GAAGA	8 cut(s)	196, 216, 483, 671, 812, 825, 984, 987
MflI	RGATCY	1 cut(s)	603
MhlI	GDGCHC	1 cut(s)	836
MluCI	AATT	3 cut(s)	721, 897, 1005
MlyI	GAGTC	2 cut(s)	469, 797
MmeI	TCCRAC	1 cut(s)	60
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	1 cut(s)	494
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	1 cut(s)	530
MspR9I	CCNGG	2 cut(s)	129, 918
MvaI	CCWGG	2 cut(s)	129, 918
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	2 cut(s)	662, 671
NcoI	CCATGG	1 cut(s)	669
NdeI	CATATG	1 cut(s)	394
NdeII	GATC	5 cut(s)	360, 370, 508, 603, 970
NlaIII	CATG	5 cut(s)	142, 264, 493, 673, 888
NlaIV	GGNNCC	4 cut(s)	38, 46, 126, 915
NmeAIII	GCCGAG	1 cut(s)	625
NspI	RCATGY	3 cut(s)	142, 264, 493
PceI	AGGCCT	1 cut(s)	689
PciI	ACATGT	2 cut(s)	138, 489
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	3 cut(s)	119, 298, 827
PinAI	ACCGGT	1 cut(s)	529
PkrI	GCNGC	4 cut(s)	107, 246, 411, 667
PleI	GAGTC	2 cut(s)	468, 797
PpsI	GAGTC	2 cut(s)	468, 797
PpuMI	RGGWCCY	3 cut(s)	37, 125, 914
PscI	ACATGT	2 cut(s)	138, 489
Psp5II	RGGWCCY	3 cut(s)	37, 125, 914
Psp6I	CCWGG	2 cut(s)	127, 916
PspGI	CCWGG	2 cut(s)	127, 916
PspN4I	GGNNCC	4 cut(s)	38, 46, 126, 915
PspPI	GGNCC	3 cut(s)	37, 125, 914
PspPPI	RGGWCCY	3 cut(s)	37, 125, 914
PsuI	RGATCY	1 cut(s)	603
RsaI	GTAC	2 cut(s)	46, 437
RsaNI	GTAC	2 cut(s)	45, 436
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	4 cut(s)	106, 245, 410, 666
Sau3AI	GATC	5 cut(s)	360, 370, 508, 603, 970
Sau96I	GGNCC	3 cut(s)	37, 125, 914
ScaI	AGTACT	1 cut(s)	437
SchI	GAGTC	2 cut(s)	469, 797
ScrFI	CCNGG	2 cut(s)	129, 918
SduI	GDGCHC	1 cut(s)	836
SetI	ASST	9 cut(s)	167, 197, 288, 387, 459, 558, 568, 631, 919
SfaNI	GCATC	2 cut(s)	142, 775
SinI	GGWCC	3 cut(s)	37, 125, 914
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	805
SmoI	CTYRAG	1 cut(s)	805
SpeI	ACTAGT	1 cut(s)	794
Sse9I	AATT	3 cut(s)	721, 897, 1005
SseBI	AGGCCT	1 cut(s)	689
SsiI	CCGC	6 cut(s)	105, 245, 468, 666, 682, 711
SspMI	CTAG	4 cut(s)	189, 638, 714, 795
StuI	AGGCCT	1 cut(s)	689
StyD4I	CCNGG	2 cut(s)	127, 916
StyI	CCWWGG	2 cut(s)	40, 669
TaiI	ACGT	2 cut(s)	167, 631
TaqI	TCGA	2 cut(s)	648, 830
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	3 cut(s)	721, 897, 1005
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	3 cut(s)	108, 247, 668
TfiI	GAWTC	3 cut(s)	119, 298, 827
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	3 cut(s)	55, 522, 587
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	3 cut(s)	55, 522, 587
VpaK11BI	GGWCC	3 cut(s)	37, 125, 914
XceI	RCATGY	3 cut(s)	142, 264, 493
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	4 cut(s)	189, 638, 714, 795
ZrmI	AGTACT	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.