Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

42465656 .. 42467071

Gene Structure 1416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018898

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGCCACAGCAAAAAGGAGTGGAGAGTCAAACATTGAAACTGGGATGGAAACAAGCGGAGATTGTGACCTTGACAAGGGCAAGGAACGTGATTTTTTCTTGGAGAGTTGTCAATGGAAGCCGGTTTTTGATGAAGCTTCAATGTCACATAGACCTCTTAAGAAGATCAAGAGCCCTGAACGTAGTCATCAGCACCAATCCTCTGCTTTTCCCCCTGAATTTCATATCCCATCTTCTCCTCCTCGTAGTTCATCAGATACATCATCAATCACTTCTTGTTGTCCACCTTCTTCCAGAATAGTTTTTCCTTTTGCTTTTGATGGGTCCCTGCCACAGCAGCAGCAGCAACCTATACAATTTCCCCACCAATTCCAGACCACAGGTCTGCAGCCTATACAATTCCCGCCAAGTACACATGTTGTAGAGCAGCAGCAGCAACAAAATCAGCAGCAGATGATATCGTTCGCATCGCAGCAGCAACAAATGATATCTTGGCGGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAAATGCTTCAGTATTGGAGTGATGCTTTGAATCTGAGTCCAAGAGGAAGGATGATGATGATGAACAGGTTTGGAGGAGCTAATAGTAGTGGTGGTATTAGGCCAGCGGCGATGCCTGTAAGTACTAGTAAGCTTTACAGGGGAGTAAGGCAAAGGCATTGGGGCAAATGGGTAGCTGAAATTCGTCTTCCTCGAAACAGGACTCGCCTCTGGCTGGGGACCTTCGACACCGCTGAAGATGCTGCCATGGCTTATGACCGTGAGGCTTTCAAGTTGAGAGGAGAGAATGCTAGGCTTAATTTCCCTGAGCTTTTCCTCAACAAAGACAAAGATAATAATAATGCTGCAGCTGTTTCCGCAGCTCCAAGTTCAACCGAAACTGCTTCTGTGCCGACTCAACAAGTTTCAAAGCCATCCAGGCACCAGGGTAACCCGCAACTGAAAAACCTTGATTTACAATTACAGGTTCCAATTTCAGATAGGGAAACAATTGCACCTCCACCAGCGCCATATTCACATCCCCAGGAAGACGATGACGCTGGTGAAAGTGATTTGGCCAATGCCAGCCAGCAATCTGAGGTTGAAAATCATGGCGAAGGAGGAGGGATCATTTCAGATGCCCCAACGCAGGAAATGGTTTGGGGAGAAATGGCAGAGGCTTGGATGAATGCAATTCCACAAGGTTGGGGTCCTGGTAGTCCTGTCTGGGATGATTTAGAGTTGGACATGACTTCCAACAATCTTGTGCTGCAATCTCATGATTATCACCATTTTACGGCCAATAATCCGAATCGGCATGAACTTCCGCAGCAGGAAGACAACTCTTGTTCTGCTTCATCTTCATATCCCATGCAGCCCTTCTTTTGGAAAGATCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

472

Amino Acids

53.06

Weight (kDa)

5.46

Isoelectric Point (pI)

68.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	223 - 272	1.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	954
AciI	CCGC	8 cut(s)	57, 404, 496, 641, 765, 891, 968, 1340
AclWI	GGATC	1 cut(s)	1148
AcoI	YGGCCR	3 cut(s)	3, 1089, 1311
AcsI	RAATTY	2 cut(s)	218, 714
AcuI	CTGAAG	2 cut(s)	527, 789
AfaI	GTAC	2 cut(s)	412, 658
AfiI	CCNNNNNNNGG	5 cut(s)	76, 748, 1162, 1309, 1398
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	415
AgsI	TTSAA	7 cut(s)	38, 141, 565, 805, 906, 942, 1118
AhdI	GACNNNNNGTC	1 cut(s)	381
AhlI	ACTAGT	1 cut(s)	659
AjnI	CCWGG	4 cut(s)	950, 957, 1056, 1225
AluBI	AGCT	7 cut(s)	137, 614, 667, 710, 844, 884, 896
AluI	AGCT	7 cut(s)	137, 614, 667, 710, 844, 884, 896
AlwI	GGATC	1 cut(s)	1148
AoxI	GGCC	4 cut(s)	3, 635, 1089, 1311
ApoI	RAATTY	2 cut(s)	218, 714
AspLEI	GCGC	1 cut(s)	1042
AspS9I	GGNCC	3 cut(s)	324, 753, 1223
AsuHPI	GGTGA	2 cut(s)	1088, 1292
AvaII	GGWCC	3 cut(s)	324, 753, 1223
BalI	TGGCCA	2 cut(s)	5, 1091
BanI	GGYRCC	1 cut(s)	954
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	3 cut(s)	713, 1068, 1356
BccI	CCATC	4 cut(s)	40, 238, 314, 955
BceAI	ACGGC	1 cut(s)	1326
BciT130I	CCWGG	4 cut(s)	952, 959, 1058, 1227
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	2 cut(s)	660, 825
BfmI	CTRYAG	2 cut(s)	386, 879
BfoI	RGCGCY	1 cut(s)	1043
BfrI	CTTAAG	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	952
BmcAI	AGTACT	1 cut(s)	658
Bme1390I	CCNGG	4 cut(s)	952, 959, 1058, 1227
Bme18I	GGWCC	3 cut(s)	324, 753, 1223
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmgT120I	GGNCC	3 cut(s)	324, 753, 1223
BmiI	GGNNCC	6 cut(s)	325, 326, 754, 956, 1002, 1224
BmrFI	CCNGG	4 cut(s)	952, 959, 1058, 1227
BmrI	ACTGGG	1 cut(s)	51
BmsI	GCATC	5 cut(s)	476, 547, 636, 763, 1141
BmuI	ACTGGG	1 cut(s)	51
BpiI	GAAGAC	3 cut(s)	713, 1068, 1356
Bpu10I	CCTNAGC	1 cut(s)	840
BsaJI	CCNNGG	3 cut(s)	780, 958, 1056
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 748, 1162, 1309, 1398
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	4 cut(s)	952, 959, 1058, 1227
BseDI	CCNNGG	3 cut(s)	780, 958, 1056
BseGI	GGATG	6 cut(s)	51, 591, 947, 1051, 1203, 1249
BseLI	CCNNNNNNNGG	5 cut(s)	76, 748, 1162, 1309, 1398
BseMII	CTCAG	3 cut(s)	560, 831, 1101
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	5 cut(s)	228, 231, 624, 828, 1149
BseYI	CCCAGC	1 cut(s)	748
BshFI	GGCC	4 cut(s)	5, 637, 1091, 1313
BshNI	GGYRCC	1 cut(s)	954
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	310, 766
BslI	CCNNNNNNNGG	5 cut(s)	76, 748, 1162, 1309, 1398
BsmFI	GGGAC	2 cut(s)	310, 766
BsmI	GAATGC	2 cut(s)	826, 1207
BsnI	GGCC	4 cut(s)	5, 637, 1091, 1313
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	165, 1140, 1405
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	8 cut(s)	57, 404, 496, 641, 765, 891, 968, 1340
BspANI	GGCC	4 cut(s)	5, 637, 1091, 1313
BspCNI	CTCAG	3 cut(s)	561, 832, 1102
BspHI	TCATGA	1 cut(s)	1291
BspLI	GGNNCC	6 cut(s)	325, 326, 754, 956, 1002, 1224
BspMAI	CTGCAG	2 cut(s)	390, 883
BspPI	GGATC	1 cut(s)	1148
BspT107I	GGYRCC	1 cut(s)	954
BspTI	CTTAAG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	46
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	780, 958, 1056
BssMI	GATC	3 cut(s)	165, 1140, 1405
BssT1I	CCWWGG	1 cut(s)	780
Bst2UI	CCWGG	4 cut(s)	952, 959, 1058, 1227
Bst4CI	ACNGT	1 cut(s)	794
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	639, 1099, 1103
BstDEI	CTNAG	3 cut(s)	569, 840, 1110
BstDSI	CCRYGG	1 cut(s)	780
BstEII	GGTNACC	1 cut(s)	962
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	6 cut(s)	51, 591, 947, 1051, 1203, 1249
BstH2I	RGCGCY	1 cut(s)	1043
BstHHI	GCGC	1 cut(s)	1042
BstKTI	GATC	3 cut(s)	168, 1143, 1408
BstMBI	GATC	3 cut(s)	165, 1140, 1405
BstNI	CCWGG	4 cut(s)	952, 959, 1058, 1227
BstNSI	RCATGY	1 cut(s)	419
BstPI	GGTNACC	1 cut(s)	962
BstSCI	CCNGG	4 cut(s)	950, 957, 1056, 1225
BstSFI	CTRYAG	2 cut(s)	386, 879
BstV2I	GAAGAC	3 cut(s)	713, 1068, 1356
BstXI	CCANNNNNNTGG	1 cut(s)	1218
BsuRI	GGCC	4 cut(s)	5, 637, 1091, 1313
BtgI	CCRYGG	1 cut(s)	780
BtgZI	GCGATG	2 cut(s)	453, 659
BtsCI	GGATG	6 cut(s)	51, 591, 947, 1051, 1203, 1249
Cac8I	GCNNGC	3 cut(s)	639, 1099, 1103
CciI	TCATGA	1 cut(s)	1291
CfoI	GCGC	1 cut(s)	1042
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	324, 753, 1223
CseI	GACGC	1 cut(s)	1079
Csp6I	GTAC	2 cut(s)	411, 657
CviAII	CATG	7 cut(s)	416, 781, 1124, 1261, 1292, 1331, 1384
CviQI	GTAC	2 cut(s)	411, 657
DdeI	CTNAG	3 cut(s)	569, 840, 1110
DpnI	GATC	3 cut(s)	167, 1142, 1407
DpnII	GATC	3 cut(s)	165, 1140, 1405
DriI	GACNNNNNGTC	1 cut(s)	381
EaeI	YGGCCR	3 cut(s)	3, 1089, 1311
Eam1105I	GACNNNNNGTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	780
Eco24I	GRGCYC	1 cut(s)	176
Eco32I	GATATC	2 cut(s)	459, 489
Eco47I	GGWCC	3 cut(s)	324, 753, 1223
Eco57I	CTGAAG	2 cut(s)	527, 789
Eco91I	GGTNACC	1 cut(s)	962
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	3 cut(s)	324, 753, 1223
EcoO65I	GGTNACC	1 cut(s)	962
EcoRII	CCWGG	4 cut(s)	950, 957, 1056, 1225
EcoRV	GATATC	2 cut(s)	459, 489
EcoT14I	CCWWGG	1 cut(s)	780
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	780
FaeI	CATG	7 cut(s)	419, 784, 1127, 1264, 1295, 1334, 1387
FaqI	GGGAC	2 cut(s)	310, 766
FatI	CATG	7 cut(s)	415, 780, 1123, 1260, 1291, 1330, 1383
FauI	CCCGC	2 cut(s)	411, 975
FokI	GGATG	6 cut(s)	58, 598, 934, 1038, 1210, 1256
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	660, 825
GlaI	GCGC	1 cut(s)	1041
GsaI	CCCAGC	1 cut(s)	752
HaeII	RGCGCY	1 cut(s)	1043
HaeIII	GGCC	4 cut(s)	5, 637, 1091, 1313
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	1079
HhaI	GCGC	1 cut(s)	1042
Hin1II	CATG	7 cut(s)	419, 784, 1127, 1264, 1295, 1334, 1387
Hin6I	GCGC	1 cut(s)	1040
HinP1I	GCGC	1 cut(s)	1040
HindIII	AAGCTT	2 cut(s)	135, 665
HinfI	GANTC	6 cut(s)	26, 565, 571, 736, 928, 1324
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	1088, 1292
Hpy166II	GTNNAC	2 cut(s)	284, 413
Hpy188I	TCNGA	6 cut(s)	256, 570, 1012, 1111, 1150, 1323
Hpy188III	TCNNGA	5 cut(s)	169, 294, 373, 1292, 1409
Hpy8I	GTNNAC	2 cut(s)	284, 413
HpyAV	CCTTC	5 cut(s)	297, 576, 766, 1124, 1402
HpyCH4III	ACNGT	1 cut(s)	794
HpyCH4IV	ACGT	2 cut(s)	88, 181
HpyCH4V	TGCA	6 cut(s)	388, 881, 1028, 1205, 1285, 1387
HpyF3I	CTNAG	3 cut(s)	569, 840, 1110
HpySE526I	ACGT	2 cut(s)	88, 181
Hsp92II	CATG	7 cut(s)	419, 784, 1127, 1264, 1295, 1334, 1387
HspAI	GCGC	1 cut(s)	1040
KflI	GGGWCCC	1 cut(s)	324
Kzo9I	GATC	3 cut(s)	165, 1140, 1405
LmnI	GCTCC	2 cut(s)	611, 901
LweI	GCATC	5 cut(s)	476, 547, 636, 763, 1141
MaeI	CTAG	2 cut(s)	660, 825
MaeII	ACGT	2 cut(s)	88, 181
MaeIII	GTNAC	3 cut(s)	65, 144, 962
MalI	GATC	3 cut(s)	167, 1142, 1407
MboI	GATC	3 cut(s)	165, 1140, 1405
MboII	GAAGA	8 cut(s)	175, 225, 282, 713, 782, 1073, 1361, 1365
MfeI	CAATTG	1 cut(s)	1023
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	2 cut(s)	5, 1091
MluNI	TGGCCA	2 cut(s)	5, 1091
MlyI	GAGTC	4 cut(s)	35, 580, 730, 922
MmeI	TCCRAC	2 cut(s)	1236, 1293
Mox20I	TGGCCA	2 cut(s)	5, 1091
MscI	TGGCCA	2 cut(s)	5, 1091
MseI	TTAA	2 cut(s)	159, 831
Msp20I	TGGCCA	2 cut(s)	5, 1091
MspA1I	CMGCKG	3 cut(s)	641, 767, 884
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	4 cut(s)	952, 959, 1058, 1227
MunI	CAATTG	1 cut(s)	1023
Mva1269I	GAATGC	2 cut(s)	826, 1207
MvaI	CCWGG	4 cut(s)	952, 959, 1058, 1227
NcoI	CCATGG	1 cut(s)	780
NdeII	GATC	3 cut(s)	165, 1140, 1405
NlaIII	CATG	7 cut(s)	419, 784, 1127, 1264, 1295, 1334, 1387
NlaIV	GGNNCC	6 cut(s)	325, 326, 754, 956, 1002, 1224
NmuCI	GTSAC	2 cut(s)	65, 144
NspI	RCATGY	1 cut(s)	419
PagI	TCATGA	1 cut(s)	1291
PciI	ACATGT	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	1 cut(s)	724
PctI	GAATGC	2 cut(s)	826, 1207
PfeI	GAWTC	2 cut(s)	565, 1324
PleI	GAGTC	4 cut(s)	34, 579, 730, 922
PpsI	GAGTC	4 cut(s)	34, 579, 730, 922
PpuMI	RGGWCCY	3 cut(s)	324, 753, 1223
PscI	ACATGT	1 cut(s)	415
Psp5II	RGGWCCY	3 cut(s)	324, 753, 1223
Psp6I	CCWGG	4 cut(s)	950, 957, 1056, 1225
PspEI	GGTNACC	1 cut(s)	962
PspFI	CCCAGC	1 cut(s)	748
PspGI	CCWGG	4 cut(s)	950, 957, 1056, 1225
PspN4I	GGNNCC	6 cut(s)	325, 326, 754, 956, 1002, 1224
PspPI	GGNCC	3 cut(s)	324, 753, 1223
PspPPI	RGGWCCY	3 cut(s)	324, 753, 1223
PstI	CTGCAG	2 cut(s)	390, 883
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	2 cut(s)	412, 658
RsaNI	GTAC	2 cut(s)	411, 657
SaqAI	TTAA	2 cut(s)	159, 831
Sau3AI	GATC	3 cut(s)	165, 1140, 1405
Sau96I	GGNCC	3 cut(s)	324, 753, 1223
ScaI	AGTACT	1 cut(s)	658
SchI	GAGTC	4 cut(s)	35, 580, 730, 922
ScrFI	CCNGG	4 cut(s)	952, 959, 1058, 1227
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	5 cut(s)	476, 547, 636, 763, 1141
SfcI	CTRYAG	2 cut(s)	386, 879
SinI	GGWCC	3 cut(s)	324, 753, 1223
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	659
SsiI	CCGC	8 cut(s)	57, 404, 496, 641, 765, 891, 968, 1340
SspMI	CTAG	2 cut(s)	660, 825
StyD4I	CCNGG	4 cut(s)	950, 957, 1056, 1225
StyI	CCWWGG	1 cut(s)	780
TaaI	ACNGT	1 cut(s)	794
TaiI	ACGT	2 cut(s)	91, 184
TaqI	TCGA	2 cut(s)	727, 759
TatI	WGTACW	2 cut(s)	410, 656
TauI	GCSGC	2 cut(s)	499, 644
TfiI	GAWTC	2 cut(s)	565, 1324
Tru1I	TTAA	2 cut(s)	159, 831
Tru9I	TTAA	2 cut(s)	159, 831
TseFI	GTSAC	2 cut(s)	65, 144
Tsp45I	GTSAC	2 cut(s)	65, 144
TspDTI	ATGAA	8 cut(s)	147, 212, 240, 611, 1214, 1347, 1359, 1365
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	3 cut(s)	324, 753, 1223
XagI	CCTNNNNNAGG	1 cut(s)	74
XapI	RAATTY	2 cut(s)	218, 714
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	2 cut(s)	660, 825
ZrmI	AGTACT	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.