Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

29279809 .. 29281131

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1244300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCTGCAGCCAAAAAGAGTGGTAAATCCAGGATGGAAACAAGCGTAGATTGGGAGGCTAACAAAGATGGGGAGCTTGATTTTTCCTTCGAGAGGCCGCCATGGAAGCCCGGTTTTAGTGAGGCGTCCATGGCGTCGAATAGGCCTCTCAAGAAAGTCAAGAGCCCTGAAAGGCAAGACCCAATTCAATCTTCACCTTCTTTAGCTCATCAAACACCATCGCCAATCATCGCTCCCTATCCATCTTCCTCTTCAAAAATAGTTTTTCCGTTTTCTTTCAACGGGTCTCAACAGCCTATGATGCAATTCCCCCCACAATTCAACCCCACAAATGTGCCTTTATTGCCCTCACCAATTCAACACCAACAGCAACAAAATCTGCAGCAAATGATATCTTTTGAATCCCAGCAGCTGCAGCAGCAGCAGATGAGTTATCCGCCCCCAGCGACGTTGACTTGGCAGCAGCACCAGCAAATTCTTCAGTATTGGAGTGATGCTTTGAATTTGAGTCCAAGAGGGAGGGCGATGATGATGAACAGATTGGGACCAGATGGAAGGCCAATGTTTCGAGCACCGGCAATGCCGTATAATACTACAAAACTTTACAGGGGAGTGAGGCAACGGCATTGGGGTAAATGGGTAGCTGAAATTCGCCTTCCTCGAAACAGGACTCGCCTCTGGCTTGGCACCTTTGACACAGCTGAAGATGCCGCCATGGCTTACGACCGCGAGGCCTTCAAATTGAGAGGAGAGAATGCCAGGCTCAATTTCCCTGAGCTTTTTCTCAACAAAGACAAATCAGATGTTCCAACTTCATCAGATCCAAGTTCAGCAGCTACTTCGCCTCCAACCCATGAGAGTTCAAAGCCAACCAGGCGCCGCAAGCAACCTCAAAAAGTCAAGAGAAGCGCTTCCAATGTGGAGGCAATGCCGCCACCACCAATTCCACATACCCAAGAAGAGAATAGCACTGACAATGATTCGGGACTGGAGTTTAGTGAGGCTAAAGTGATTGACGAAATTGAGGCAAATACGGATTGCGCAGGAGGGAATTCGCAGCAAGAGGAAATTGTTTGGGGGGACATGGCAGATGCTTGGATTAATGCAATTCCTGCAGGTTGGGGTCCAGGTAGTCCTGTGTGGGATGATTTGGACGCCAACAACAATCTTTTGCTGCAATCACATCTCCCTTTTACCAATCCAAACCAGCAGGACTATAACACTAACATTTGTCCTCAACAAGTGCTCCATAATTCGGGTTCGGGTTCCTCTTCTTCCTCTTCATATCCCATGAAGAACTTCTTTTGGAAGGACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

441

Amino Acids

49.55

Weight (kDa)

6.48

Isoelectric Point (pI)

65.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	201 - 250	1.7e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1042
Acc36I	ACCTGC	1 cut(s)	1106
AccB1I	GGYRCC	2 cut(s)	686, 876
AccII	CGCG	1 cut(s)	729
AciI	CCGC	6 cut(s)	98, 437, 711, 727, 880, 932
AclWI	GGATC	1 cut(s)	815
AcsI	RAATTY	4 cut(s)	474, 502, 648, 1051
AcuI	CTGAAG	2 cut(s)	464, 723
AcyI	GRCGYC	4 cut(s)	125, 134, 877, 1155
AfeI	AGCGCT	1 cut(s)	910
AfiI	CCNNNNNNNGG	2 cut(s)	93, 1255
AgsI	TTSAA	9 cut(s)	188, 255, 280, 322, 359, 401, 502, 739, 864
AjnI	CCWGG	4 cut(s)	29, 758, 872, 1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	7 cut(s)	76, 206, 412, 644, 701, 778, 836
AluI	AGCT	7 cut(s)	76, 206, 412, 644, 701, 778, 836
Alw21I	GWGCWC	2 cut(s)	574, 1248
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	815
AlwNI	CAGNNNCTG	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	910
AoxI	GGCC	4 cut(s)	95, 143, 557, 732
ApoI	RAATTY	4 cut(s)	474, 502, 648, 1051
AseI	ATTAAT	1 cut(s)	1101
Asp700I	GAANNNNTTC	2 cut(s)	910, 1298
AspLEI	GCGC	3 cut(s)	879, 911, 1043
AspS9I	GGNCC	3 cut(s)	545, 1124, 1312
AsuC2I	CCSGG	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	186, 342
AvaII	GGWCC	3 cut(s)	545, 1124, 1312
BanI	GGYRCC	2 cut(s)	686, 876
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	2 cut(s)	574, 1248
BccI	CCATC	5 cut(s)	28, 62, 226, 250, 545
BceAI	ACGGC	2 cut(s)	568, 638
BcgI	CGANNNNNNTGC	2 cut(s)	822, 856
BciT130I	CCWGG	4 cut(s)	31, 760, 874, 1128
BcnI	CCSGG	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	291
BfmI	CTRYAG	4 cut(s)	6, 380, 413, 1113
BfoI	RGCGCY	2 cut(s)	880, 912
BfuAI	ACCTGC	1 cut(s)	1106
BglI	GCCNNNNNGGC	2 cut(s)	716, 874
Bme1390I	CCNGG	5 cut(s)	31, 111, 760, 874, 1128
Bme18I	GGWCC	3 cut(s)	545, 1124, 1312
BmgT120I	GGNCC	3 cut(s)	545, 1124, 1312
BmiI	GGNNCC	5 cut(s)	546, 688, 878, 1125, 1267
BmrFI	CCNGG	5 cut(s)	31, 111, 760, 874, 1128
BmsI	GCATC	4 cut(s)	291, 484, 697, 1081
BpmI	CTGGAG	1 cut(s)	1010
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	1 cut(s)	111
BsaHI	GRCGYC	4 cut(s)	125, 134, 877, 1155
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	101, 129, 714
BsaXI	ACNNNNNCTCC	4 cut(s)	829, 859, 1230, 1260
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 1255
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	1 cut(s)	993
Bse3DI	GCAATG	2 cut(s)	585, 933
BseBI	CCWGG	4 cut(s)	31, 760, 874, 1128
BseDI	CCNNGG	3 cut(s)	101, 129, 714
BseGI	GGATG	2 cut(s)	39, 1150
BseLI	CCNNNNNNNGG	2 cut(s)	93, 1255
BseMI	GCAATG	2 cut(s)	585, 933
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	1 cut(s)	993
BseRI	GAGGAG	1 cut(s)	762
BseYI	CCCAGC	2 cut(s)	405, 442
Bsh1236I	CGCG	1 cut(s)	729
Bsh1285I	CGRYCG	1 cut(s)	727
BshFI	GGCC	4 cut(s)	97, 145, 559, 734
BshNI	GGYRCC	2 cut(s)	686, 876
BsiEI	CGRYCG	1 cut(s)	727
BsiHKAI	GWGCWC	2 cut(s)	574, 1248
BsiSI	CCGG	2 cut(s)	111, 575
BslFI	GGGAC	3 cut(s)	558, 999, 1094
BslI	CCNNNNNNNGG	2 cut(s)	93, 1255
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	3 cut(s)	558, 999, 1094
BsmI	GAATGC	1 cut(s)	760
BsnI	GGCC	4 cut(s)	97, 145, 559, 734
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	3 cut(s)	167, 574, 1248
Bsp143I	GATC	1 cut(s)	820
Bsp19I	CCATGG	3 cut(s)	101, 129, 714
BspACI	CCGC	6 cut(s)	98, 437, 711, 727, 880, 932
BspANI	GGCC	4 cut(s)	97, 145, 559, 734
BspCNI	CTCAG	1 cut(s)	766
BspFNI	CGCG	1 cut(s)	729
BspLI	GGNNCC	5 cut(s)	546, 688, 878, 1125, 1267
BspMAI	CTGCAG	4 cut(s)	10, 384, 417, 1117
BspMI	ACCTGC	1 cut(s)	1106
BspPI	GGATC	1 cut(s)	815
BspT107I	GGYRCC	2 cut(s)	686, 876
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	585, 933
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	1 cut(s)	993
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	101, 129, 714
BssMI	GATC	1 cut(s)	820
BssNI	GRCGYC	4 cut(s)	125, 134, 877, 1155
BssT1I	CCWWGG	3 cut(s)	101, 129, 714
Bst2UI	CCWGG	4 cut(s)	31, 760, 874, 1128
Bst6I	CTCTTC	4 cut(s)	256, 954, 1276, 1285
BstACI	GRCGYC	4 cut(s)	125, 134, 877, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstC8I	GCNNGC	1 cut(s)	884
BstDEI	CTNAG	1 cut(s)	774
BstDSI	CCRYGG	3 cut(s)	101, 129, 714
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	2 cut(s)	39, 1150
BstFNI	CGCG	1 cut(s)	729
BstH2I	RGCGCY	2 cut(s)	880, 912
BstHHI	GCGC	3 cut(s)	879, 911, 1043
BstKTI	GATC	1 cut(s)	823
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	820
BstMCI	CGRYCG	1 cut(s)	727
BstNI	CCWGG	4 cut(s)	31, 760, 874, 1128
BstSCI	CCNGG	5 cut(s)	29, 109, 758, 872, 1126
BstSFI	CTRYAG	4 cut(s)	6, 380, 413, 1113
BstUI	CGCG	1 cut(s)	729
BstX2I	RGATCY	1 cut(s)	820
BstYI	RGATCY	1 cut(s)	820
BsuRI	GGCC	4 cut(s)	97, 145, 559, 734
BtgI	CCRYGG	3 cut(s)	101, 129, 714
BtgZI	GCGATG	3 cut(s)	204, 214, 539
BtsCI	GGATG	2 cut(s)	39, 1150
BtsIMutI	CAGTG	1 cut(s)	969
BveI	ACCTGC	1 cut(s)	1106
Cac8I	GCNNGC	1 cut(s)	884
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	3 cut(s)	879, 911, 1043
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	3 cut(s)	545, 1124, 1312
CseI	GACGC	3 cut(s)	114, 123, 1163
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	6 cut(s)	102, 130, 715, 854, 1084, 1291
DdeI	CTNAG	1 cut(s)	774
DinI	GGCGCC	1 cut(s)	878
DpnI	GATC	1 cut(s)	822
DpnII	GATC	1 cut(s)	820
Eam1104I	CTCTTC	4 cut(s)	256, 954, 1276, 1285
EarI	CTCTTC	4 cut(s)	256, 954, 1276, 1285
EciI	GGCGGA	1 cut(s)	426
Eco130I	CCWWGG	3 cut(s)	101, 129, 714
Eco147I	AGGCCT	2 cut(s)	145, 734
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	3 cut(s)	545, 1124, 1312
Eco47III	AGCGCT	1 cut(s)	910
Eco57I	CTGAAG	2 cut(s)	464, 723
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	1051
EcoRII	CCWGG	4 cut(s)	29, 758, 872, 1126
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	101, 129, 714
EcoT38I	GRGCYC	1 cut(s)	167
EgeI	GGCGCC	1 cut(s)	878
EheI	GGCGCC	1 cut(s)	878
ErhI	CCWWGG	3 cut(s)	101, 129, 714
FaeI	CATG	6 cut(s)	105, 133, 718, 857, 1087, 1294
FalI	AAGNNNNNCTT	2 cut(s)	1286, 1318
FaqI	GGGAC	3 cut(s)	558, 999, 1094
FatI	CATG	6 cut(s)	101, 129, 714, 853, 1083, 1290
FokI	GGATG	2 cut(s)	46, 1157
FriOI	GRGCYC	1 cut(s)	167
FspI	TGCGCA	1 cut(s)	1042
GlaI	GCGC	3 cut(s)	878, 910, 1042
GsaI	CCCAGC	2 cut(s)	409, 446
GsuI	CTGGAG	1 cut(s)	1010
HaeII	RGCGCY	2 cut(s)	880, 912
HaeIII	GGCC	4 cut(s)	97, 145, 559, 734
HapII	CCGG	2 cut(s)	111, 575
HgaI	GACGC	3 cut(s)	114, 123, 1163
HhaI	GCGC	3 cut(s)	879, 911, 1043
Hin1I	GRCGYC	4 cut(s)	125, 134, 877, 1155
Hin1II	CATG	6 cut(s)	105, 133, 718, 857, 1087, 1294
Hin6I	GCGC	3 cut(s)	877, 909, 1041
HinP1I	GCGC	3 cut(s)	877, 909, 1041
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	4 cut(s)	401, 508, 670, 980
HpaII	CCGG	2 cut(s)	111, 575
HphI	GGTGA	2 cut(s)	186, 342
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	2 cut(s)	802, 820
Hpy188III	TCNNGA	5 cut(s)	91, 151, 160, 901, 984
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	2 cut(s)	139, 451
HpyAV	CCTTC	6 cut(s)	97, 207, 549, 665, 745, 1303
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	7 cut(s)	8, 304, 382, 415, 1106, 1115, 1177
HpyF3I	CTNAG	1 cut(s)	774
HpySE526I	ACGT	1 cut(s)	449
Hsp92I	GRCGYC	4 cut(s)	125, 134, 877, 1155
Hsp92II	CATG	6 cut(s)	105, 133, 718, 857, 1087, 1294
HspAI	GCGC	3 cut(s)	877, 909, 1041
KasI	GGCGCC	1 cut(s)	876
Kzo9I	GATC	1 cut(s)	820
LmnI	GCTCC	3 cut(s)	73, 238, 1251
LweI	GCATC	4 cut(s)	291, 484, 697, 1081
MaeII	ACGT	1 cut(s)	449
MalI	GATC	1 cut(s)	822
MboI	GATC	1 cut(s)	820
MflI	RGATCY	1 cut(s)	820
MhlI	GDGCHC	3 cut(s)	167, 574, 1248
Mly113I	GGCGCC	1 cut(s)	877
MlyI	GAGTC	2 cut(s)	517, 664
MmeI	TCCRAC	2 cut(s)	833, 872
MroXI	GAANNNNTTC	2 cut(s)	910, 1298
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	412, 701
MspI	CCGG	2 cut(s)	111, 575
MspR9I	CCNGG	5 cut(s)	31, 111, 760, 874, 1128
Mva1269I	GAATGC	1 cut(s)	760
MvaI	CCWGG	4 cut(s)	31, 760, 874, 1128
MvnI	CGCG	1 cut(s)	729
NarI	GGCGCC	1 cut(s)	877
NciI	CCSGG	1 cut(s)	111
NcoI	CCATGG	3 cut(s)	101, 129, 714
NdeII	GATC	1 cut(s)	820
NlaIII	CATG	6 cut(s)	105, 133, 718, 857, 1087, 1294
NlaIV	GGNNCC	5 cut(s)	546, 688, 878, 1125, 1267
NsbI	TGCGCA	1 cut(s)	1042
OliI	CACNNNNGTG	1 cut(s)	332
PceI	AGGCCT	2 cut(s)	145, 734
PcsI	WCGNNNNNNNCGW	1 cut(s)	658
PctI	GAATGC	1 cut(s)	760
PdmI	GAANNNNTTC	2 cut(s)	910, 1298
PfeI	GAWTC	2 cut(s)	401, 980
PfoI	TCCNGGA	1 cut(s)	29
PleI	GAGTC	2 cut(s)	516, 664
PluTI	GGCGCC	1 cut(s)	880
PpsI	GAGTC	2 cut(s)	516, 664
PshBI	ATTAAT	1 cut(s)	1101
Psp6I	CCWGG	4 cut(s)	29, 758, 872, 1126
PspFI	CCCAGC	2 cut(s)	405, 442
PspGI	CCWGG	4 cut(s)	29, 758, 872, 1126
PspN4I	GGNNCC	5 cut(s)	546, 688, 878, 1125, 1267
PspPI	GGNCC	3 cut(s)	545, 1124, 1312
PstI	CTGCAG	4 cut(s)	10, 384, 417, 1117
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	820
PvuII	CAGCTG	2 cut(s)	412, 701
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	1 cut(s)	1101
Sau3AI	GATC	1 cut(s)	820
Sau96I	GGNCC	3 cut(s)	545, 1124, 1312
SbfI	CCTGCAGG	1 cut(s)	1117
SchI	GAGTC	2 cut(s)	517, 664
ScrFI	CCNGG	5 cut(s)	31, 111, 760, 874, 1128
SdaI	CCTGCAGG	1 cut(s)	1117
SduI	GDGCHC	3 cut(s)	167, 574, 1248
SfaNI	GCATC	4 cut(s)	291, 484, 697, 1081
SfcI	CTRYAG	4 cut(s)	6, 380, 413, 1113
SfoI	GGCGCC	1 cut(s)	878
SinI	GGWCC	3 cut(s)	545, 1124, 1312
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse8387I	CCTGCAGG	1 cut(s)	1117
SseBI	AGGCCT	2 cut(s)	145, 734
SsiI	CCGC	6 cut(s)	98, 437, 711, 727, 880, 932
SspDI	GGCGCC	1 cut(s)	876
StuI	AGGCCT	2 cut(s)	145, 734
StyD4I	CCNGG	5 cut(s)	29, 109, 758, 872, 1126
StyI	CCWWGG	3 cut(s)	101, 129, 714
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	4 cut(s)	90, 137, 568, 661
TauI	GCSGC	4 cut(s)	100, 713, 882, 934
TfiI	GAWTC	2 cut(s)	401, 980
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	1 cut(s)	976
TspDTI	ATGAA	4 cut(s)	548, 804, 1272, 1307
TspGWI	ACGGA	2 cut(s)	258, 1049
TspRI	CASTG	1 cut(s)	976
VpaK11BI	GGWCC	3 cut(s)	545, 1124, 1312
VspI	ATTAAT	1 cut(s)	1101
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	4 cut(s)	474, 502, 648, 1051
XmnI	GAANNNNTTC	2 cut(s)	910, 1298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.