Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

19953052 .. 19954410

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCCGCAGCAAAAAGGAGTGGTGAATCAAACTTTGAAACTCAGATGGAAACAAGCAAAGATTGTGACCTTGACAAAGGCAAGGAACATGATTTTCTGTTGGAGGGGCATCAATGGAAGCCGGTTTTTGATGAAGCTCCAGTATCAAATAGACCTCTTAAGAAGATCAAGAGCCCTGAACGTAGCCATCAGCACCGATCCTCTGCTTTTTCCCCTGAATTTCAAATCCCATCTCCTCCTCCTCCTCCTCGTAGTTCATCAGACACATCAACAATCACTTCTTGTTGTCCTCTTTCTTCAAGAATAGTCTTTCCTTTTGCTTTTGATGGGTCTCTGCCTCAGCAGCAGCAGCAGCAACCTATCCAATTTCCCCGCCAATTTCATAGCACAGGTCTGCAGCCTAATCAGTTCCCGCCAAATACACACGTTGTGGAGCAGCAGCAACAACAAAATCAGCAGCAAATGATATCATTTGCTTCGCAGCAGCAACACATGATATCTTGGCAGCAACACCAGCAACAGCAAATGCTTCAGTATTGGAGTGATGCTTTGAATTTGAGTCCAAGAGGAAGGATGATGATGATGATGAACAGGTTTGGAGGTGCTAATAGTAGTGGTGGTATTAGGCCACCAGCAATGCCTATAAGTACCAGTAAGCTTTACAGGGGAGTAAGGCAAAGGCATTGGGGCAAATGGGTAGCTGAAATTCGTCTTCCTCGAAACAGAACTCGCCTCTGGCTCGGCACCTTCGACACAGCTGAAGATGCTGCCATGGCTTATGACCGCGAGGCCTTCAAGTTGAGAGGAGAGAATGCTAGGCTTAATTTCCCTGAGCTTTTCCTCAACAAAGAGAAACATAATGATAATGCTGCAGCTGTTTCAGCAGCTGCGCCGATTCAACAAGTTTCAAAGCCATTGAGGTCCCAAGGTATGCAGCAGCTGAAAAACCTTGATTTACAGTTACAGGTTCCAATTTCAGATAACGAAACAGTTGCACCTCCACCAGCGCCATATGCACAGCCCCAGGAAGACGATGACACTAGCCATCAACTTGAGGTTGAAAATCATGGAGAAAGAGGAGGGATCATGTCAGATGCCCCAACACAAGAAATGGTTTGGGGAGAAATGGCAGAGGCTTGGCTGAATGCAATTCCACAAGGTTGGGGTCCTGGTAGTCCTGTCTGGGATGATTTAGAGTTGGACATGACTTCCAACAATCTTGTGCTGCCATCTCATGATCATAACGGTTTTACCGCCAATAATTCGAATCGGCATGACTTTCCGCAACAGGATGACAACTCTTGTTCTGCTTCATCTTCTTATCCTATGCAGCCTTTCTTTTGGAAAGATCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

453

Amino Acids

51.22

Weight (kDa)

5.76

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	220 - 269	1.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	743
AccII	CGCG	1 cut(s)	786
AciI	CCGC	6 cut(s)	6, 373, 413, 784, 1254, 1283
AclWI	GGATC	2 cut(s)	192, 1091
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	218, 553, 705
AcuI	CTGAAG	2 cut(s)	515, 780
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	1 cut(s)	649
AflII	CTTAAG	1 cut(s)	158
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	8 cut(s)	38, 224, 300, 553, 796, 899, 909, 1061
AjnI	CCWGG	2 cut(s)	1023, 1168
AluBI	AGCT	8 cut(s)	137, 658, 701, 758, 835, 875, 887, 940
AluI	AGCT	8 cut(s)	137, 658, 701, 758, 835, 875, 887, 940
Alw26I	GTCTC	1 cut(s)	336
AlwI	GGATC	2 cut(s)	192, 1091
AlwNI	CAGNNNCTG	2 cut(s)	887, 940
AoxI	GGCC	3 cut(s)	3, 626, 789
ApoI	RAATTY	3 cut(s)	218, 553, 705
AspLEI	GCGC	2 cut(s)	892, 1009
AspS9I	GGNCC	2 cut(s)	921, 1166
AsuHPI	GGTGA	1 cut(s)	35
AsuII	TTCGAA	1 cut(s)	1265
AvaII	GGWCC	2 cut(s)	921, 1166
BanI	GGYRCC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	2 cut(s)	704, 1035
BbvCI	CCTCAGC	1 cut(s)	339
BccI	CCATC	6 cut(s)	40, 195, 238, 320, 1053, 1237
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BciT130I	CCWGG	2 cut(s)	1025, 1170
BclI	TGATCA	1 cut(s)	1237
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	2 cut(s)	816, 1041
BfmI	CTRYAG	2 cut(s)	395, 870
BfoI	RGCGCY	1 cut(s)	1010
BfrI	CTTAAG	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	1025, 1170
Bme18I	GGWCC	2 cut(s)	921, 1166
BmgT120I	GGNCC	2 cut(s)	921, 1166
BmiI	GGNNCC	4 cut(s)	745, 923, 969, 1167
BmrFI	CCNGG	2 cut(s)	1025, 1170
BmsI	GCATC	4 cut(s)	118, 535, 754, 1084
BpiI	GAAGAC	2 cut(s)	704, 1035
BpmI	CTGGAG	1 cut(s)	123
Bpu10I	CCTNAGC	2 cut(s)	339, 831
Bpu14I	TTCGAA	1 cut(s)	1265
BpuEI	CTTGAG	1 cut(s)	1073
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	3 cut(s)	771, 925, 1023
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	140, 651
Bse3DI	GCAATG	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	1025, 1170
BseDI	CCNNGG	3 cut(s)	771, 925, 1023
BseGI	GGATG	3 cut(s)	579, 1192, 1297
BseMI	GCAATG	1 cut(s)	642
BseMII	CTCAG	3 cut(s)	56, 353, 822
BseNI	ACTGG	2 cut(s)	140, 651
BseRI	GAGGAG	7 cut(s)	225, 228, 231, 234, 237, 819, 1092
Bsh1236I	CGCG	1 cut(s)	786
BshFI	GGCC	3 cut(s)	5, 628, 791
BshNI	GGYRCC	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	907
BsmAI	GTCTC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	907
BsmI	GAATGC	2 cut(s)	817, 1150
BsnI	GGCC	3 cut(s)	5, 628, 791
Bso31I	GGTCTC	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	1265
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	6 cut(s)	6, 373, 413, 784, 1254, 1283
BspANI	GGCC	3 cut(s)	5, 628, 791
BspCNI	CTCAG	3 cut(s)	55, 352, 823
BspFNI	CGCG	1 cut(s)	786
BspHI	TCATGA	1 cut(s)	1234
BspLI	GGNNCC	4 cut(s)	745, 923, 969, 1167
BspMAI	CTGCAG	2 cut(s)	399, 874
BspPI	GGATC	2 cut(s)	192, 1091
BspT104I	TTCGAA	1 cut(s)	1265
BspT107I	GGYRCC	1 cut(s)	743
BspTI	CTTAAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	642
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	140, 651
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	771, 925, 1023
BssMI	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
BssT1I	CCWWGG	2 cut(s)	771, 925
Bst2UI	CCWGG	2 cut(s)	1025, 1170
Bst4CI	ACNGT	3 cut(s)	960, 991, 1247
BstAFI	CTTAAG	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	1265
BstDEI	CTNAG	3 cut(s)	42, 339, 831
BstDSI	CCRYGG	1 cut(s)	771
BstF5I	GGATG	3 cut(s)	579, 1192, 1297
BstFNI	CGCG	1 cut(s)	786
BstH2I	RGCGCY	1 cut(s)	1010
BstHHI	GCGC	2 cut(s)	892, 1009
BstKTI	GATC	5 cut(s)	168, 200, 1086, 1240, 1351
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
BstMWI	GCNNNNNNNGC	8 cut(s)	343, 349, 352, 514, 764, 773, 881, 1013
BstNI	CCWGG	2 cut(s)	1025, 1170
BstSCI	CCNGG	2 cut(s)	1023, 1168
BstSFI	CTRYAG	2 cut(s)	395, 870
BstUI	CGCG	1 cut(s)	786
BstV2I	GAAGAC	2 cut(s)	704, 1035
BstXI	CCANNNNNNTGG	1 cut(s)	1161
BsuRI	GGCC	3 cut(s)	5, 628, 791
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	579, 1192, 1297
CaiI	CAGNNNCTG	2 cut(s)	887, 940
CciI	TCATGA	1 cut(s)	1234
CfoI	GCGC	2 cut(s)	892, 1009
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	921, 1166
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	8 cut(s)	89, 493, 772, 1067, 1087, 1204, 1235, 1274
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	3 cut(s)	42, 339, 831
DpnI	GATC	5 cut(s)	167, 199, 1085, 1239, 1350
DpnII	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
DraIII	CACNNNGTG	1 cut(s)	430
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	2 cut(s)	771, 925
Eco147I	AGGCCT	1 cut(s)	791
Eco24I	GRGCYC	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	336
Eco32I	GATATC	2 cut(s)	468, 498
Eco47I	GGWCC	2 cut(s)	921, 1166
Eco57I	CTGAAG	2 cut(s)	515, 780
EcoO109I	RGGNCCY	2 cut(s)	921, 1166
EcoRII	CCWGG	2 cut(s)	1023, 1168
EcoRV	GATATC	2 cut(s)	468, 498
EcoT14I	CCWWGG	2 cut(s)	771, 925
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	2 cut(s)	771, 925
FaeI	CATG	8 cut(s)	92, 496, 775, 1070, 1090, 1207, 1238, 1277
FaqI	GGGAC	1 cut(s)	907
FatI	CATG	8 cut(s)	88, 492, 771, 1066, 1086, 1203, 1234, 1273
FauI	CCCGC	2 cut(s)	380, 420
FauNDI	CATATG	1 cut(s)	1012
FbaI	TGATCA	1 cut(s)	1237
FokI	GGATG	3 cut(s)	586, 1199, 1304
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	816, 1041
GlaI	GCGC	2 cut(s)	891, 1008
GsuI	CTGGAG	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	1010
HaeIII	GGCC	3 cut(s)	5, 628, 791
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	2 cut(s)	892, 1009
Hin1II	CATG	8 cut(s)	92, 496, 775, 1070, 1090, 1207, 1238, 1277
Hin6I	GCGC	2 cut(s)	890, 1007
HinP1I	GCGC	2 cut(s)	890, 1007
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	4 cut(s)	26, 559, 895, 1267
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	4 cut(s)	45, 262, 979, 1093
Hpy188III	TCNNGA	4 cut(s)	169, 300, 1235, 1352
HpyAV	CCTTC	3 cut(s)	564, 757, 802
HpyCH4III	ACNGT	3 cut(s)	960, 991, 1247
HpyCH4IV	ACGT	2 cut(s)	181, 426
HpyCH4V	TGCA	7 cut(s)	397, 872, 934, 995, 1016, 1148, 1330
HpyF10VI	GCNNNNNNNGC	8 cut(s)	343, 349, 352, 514, 764, 773, 881, 1013
HpyF3I	CTNAG	3 cut(s)	42, 339, 831
HpySE526I	ACGT	2 cut(s)	181, 426
Hsp92II	CATG	8 cut(s)	92, 496, 775, 1070, 1090, 1207, 1238, 1277
HspAI	GCGC	2 cut(s)	890, 1007
Ksp22I	TGATCA	1 cut(s)	1237
Kzo9I	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
LmnI	GCTCC	2 cut(s)	142, 433
LweI	GCATC	4 cut(s)	118, 535, 754, 1084
MaeI	CTAG	2 cut(s)	816, 1041
MaeII	ACGT	2 cut(s)	181, 426
MaeIII	GTNAC	2 cut(s)	65, 960
MalI	GATC	5 cut(s)	167, 199, 1085, 1239, 1350
MboI	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
MboII	GAAGA	6 cut(s)	175, 288, 704, 773, 1040, 1308
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	9 cut(s)	218, 365, 377, 553, 705, 823, 972, 1149, 1261
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	3 cut(s)	81, 1179, 1236
MseI	TTAA	2 cut(s)	159, 822
MspA1I	CMGCKG	4 cut(s)	758, 875, 887, 940
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	1025, 1170
Mva1269I	GAATGC	2 cut(s)	817, 1150
MvaI	CCWGG	2 cut(s)	1025, 1170
MvnI	CGCG	1 cut(s)	786
MwoI	GCNNNNNNNGC	8 cut(s)	343, 349, 352, 514, 764, 773, 881, 1013
NcoI	CCATGG	1 cut(s)	771
NdeI	CATATG	1 cut(s)	1012
NdeII	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
NlaIII	CATG	8 cut(s)	92, 496, 775, 1070, 1090, 1207, 1238, 1277
NlaIV	GGNNCC	4 cut(s)	745, 923, 969, 1167
NmeAIII	GCCGAG	1 cut(s)	720
NmuCI	GTSAC	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	1265
PagI	TCATGA	1 cut(s)	1234
PceI	AGGCCT	1 cut(s)	791
PcsI	WCGNNNNNNNCGW	2 cut(s)	715, 747
PctI	GAATGC	2 cut(s)	817, 1150
PfeI	GAWTC	3 cut(s)	26, 895, 1267
PleI	GAGTC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	567
PpuMI	RGGWCCY	2 cut(s)	921, 1166
Psp5II	RGGWCCY	2 cut(s)	921, 1166
Psp6I	CCWGG	2 cut(s)	1023, 1168
PspGI	CCWGG	2 cut(s)	1023, 1168
PspN4I	GGNNCC	4 cut(s)	745, 923, 969, 1167
PspPI	GGNCC	2 cut(s)	921, 1166
PspPPI	RGGWCCY	2 cut(s)	921, 1166
PstI	CTGCAG	2 cut(s)	399, 874
PstNI	CAGNNNCTG	2 cut(s)	887, 940
PvuII	CAGCTG	4 cut(s)	758, 875, 887, 940
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
SaqAI	TTAA	2 cut(s)	159, 822
Sau3AI	GATC	5 cut(s)	165, 197, 1083, 1237, 1348
Sau96I	GGNCC	2 cut(s)	921, 1166
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	2 cut(s)	1025, 1170
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	4 cut(s)	118, 535, 754, 1084
SfcI	CTRYAG	2 cut(s)	395, 870
SfuI	TTCGAA	1 cut(s)	1265
SinI	GGWCC	2 cut(s)	921, 1166
SmlI	CTYRAG	2 cut(s)	158, 1052
SmoI	CTYRAG	2 cut(s)	158, 1052
Sse9I	AATT	9 cut(s)	218, 365, 377, 553, 705, 823, 972, 1149, 1261
SseBI	AGGCCT	1 cut(s)	791
SsiI	CCGC	6 cut(s)	6, 373, 413, 784, 1254, 1283
SspMI	CTAG	2 cut(s)	816, 1041
StuI	AGGCCT	1 cut(s)	791
StyD4I	CCNGG	2 cut(s)	1023, 1168
StyI	CCWWGG	2 cut(s)	771, 925
TaaI	ACNGT	3 cut(s)	960, 991, 1247
TaiI	ACGT	2 cut(s)	184, 429
TaqI	TCGA	3 cut(s)	718, 750, 1265
TasI	AATT	9 cut(s)	218, 365, 377, 553, 705, 823, 972, 1149, 1261
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	3 cut(s)	26, 895, 1267
Tru1I	TTAA	2 cut(s)	159, 822
Tru9I	TTAA	2 cut(s)	159, 822
TseFI	GTSAC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	5 cut(s)	147, 246, 371, 602, 1302
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	921, 1166
XapI	RAATTY	3 cut(s)	218, 553, 705
XspI	CTAG	2 cut(s)	816, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.