Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

22924559 .. 22925893

Gene Structure 1335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCTGCAGCAAAAAAGAGTGGTAAATCCGGGATGGAAACAAGCGTAGATTGGGAGGCTAACAAAGATGGGGACCTTGATTTTTCCTTCGAGAGGCCGCCATGGAAGCCCGGTTTTAGTGAGGCTTCCATGGCGTCAAATAGGCCTCTCAAGAAAGTCAAGAGCCCTGAAAGGCAAGACCCAATTCAATCTTCAGCTTCTTTAGCTCATCAAACACCATCTCCAATCATCGCTCCCTATCCATCTTCCTCTTCAAAAATAGTTTTTCCGTTTTTTTTCGACGGGTCTCAACAGCCTATGATGCAATTCCCCCACCAATTCAACCCCACAAATGTGCCTATATTGCCCTCACCAATTCAACAGCAACAGCAACAAAATCCGCAGCAAATGATATCATTTGAATCCCAGCAGCTGCAGCAGCAGCAGCAGCACATGAGTTATCCGCCCCCAGCGACGTTGAGTTGGCAGCAGCACCAGCAAATTCTTCAGTATTGGAGTGATGCTTTGAATTTGAGTCCAAGAGGGAGGGCGATGATGATGAACAGATTGGGACCAGATGGAAGGCCAATGTTTCGAGCGCCGGCAATGCCTTATAATACTACAAAACTTTACAGGGGAGTGAGGCAACGGCATTGGGGCAAATGGGTAGCTGAAATTCGCCTTCCTCGAAACAGGACTCGCCTCTGGCTTGGCACCTTTGACACAGCTGAGGATGCCGCCATGGCTTATGACCGCGAGGCCTTCAAATTGAGAGGAGAGAATGCCAGGCTCAATTTCCCTGAGCTTTTTCTCAACAAAGACAAACCAGATGTTCCAACTTCATCAGCTCCAAGTTCAGCAGCTACTTCGCCTCCAACCCATGAGAGTTCAAAGCCAACCAGGCGCCGCAAGCAACCTCAAAAAGTCAAGACAAGCGCTTCCAATATGGAGGCAATGCCGCCACCACCAGTTCCACATACCCATGAAGAGAATAGCACTGACAATGATTCGGGACTGGAGTCGAGCGAGGCTAAAGCGATTGACGAAATTGAGGCAAATACGGATTGCGCAGGAGGAGAAGGGAATTCACAGCAAGAAGAAATTGTTTGGGGGGACATGGCAGAAGCTTGGCTTAATGCAATTCCTGCAGGTTGGGGTCCAGGTAGTCCTGTGTGGGATGATTTGGACGCCAACAACAATCTTTTGCTGCAATCACATCTCCCTTTTACCAATCCAAACCAACAGGACTATAACACTAACATTTGTCCTCAACAAGTGCTCCAAAATTCGGGTTCAGGTTCCTCTTCTTCCTCTTCATATCCCGTGAAGAACTTCTTTTGGAAGGACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

445

Amino Acids

49.75

Weight (kDa)

6.03

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	203 - 252	1.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	594
Acc16I	TGCGCA	1 cut(s)	1048
Acc36I	ACCTGC	1 cut(s)	1118
AccB1I	GGYRCC	2 cut(s)	692, 882
AccII	CGCG	1 cut(s)	735
AciI	CCGC	7 cut(s)	98, 380, 443, 717, 733, 886, 938
AcsI	RAATTY	5 cut(s)	480, 508, 654, 1063, 1264
AcuI	CTGAAG	2 cut(s)	177, 470
AcyI	GRCGYC	3 cut(s)	134, 883, 1167
AfeI	AGCGCT	1 cut(s)	916
AfiI	CCNNNNNNNGG	2 cut(s)	93, 1267
AgsI	TTSAA	8 cut(s)	188, 255, 322, 359, 401, 508, 745, 870
AjnI	CCWGG	3 cut(s)	764, 878, 1138
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	9 cut(s)	197, 206, 412, 650, 707, 784, 827, 842, 1106
AluI	AGCT	9 cut(s)	197, 206, 412, 650, 707, 784, 827, 842, 1106
Alw21I	GWGCWC	1 cut(s)	1260
Alw26I	GTCTC	1 cut(s)	291
AlwNI	CAGNNNCTG	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	916
AoxI	GGCC	4 cut(s)	95, 143, 563, 738
ApoI	RAATTY	5 cut(s)	480, 508, 654, 1063, 1264
Asp700I	GAANNNNTTC	1 cut(s)	1310
AspLEI	GCGC	4 cut(s)	580, 885, 917, 1049
AspS9I	GGNCC	4 cut(s)	73, 551, 1136, 1324
AsuC2I	CCSGG	2 cut(s)	31, 111
AsuHPI	GGTGA	1 cut(s)	342
AvaII	GGWCC	4 cut(s)	73, 551, 1136, 1324
BanI	GGYRCC	2 cut(s)	692, 882
BanII	GRGCYC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	1260
BbvCI	CCTCAGC	1 cut(s)	708
BccI	CCATC	5 cut(s)	28, 62, 226, 250, 551
BceAI	ACGGC	1 cut(s)	644
BcgI	CGANNNNNNTGC	2 cut(s)	828, 862
BciT130I	CCWGG	3 cut(s)	766, 880, 1140
BcnI	CCSGG	2 cut(s)	31, 111
BcoDI	GTCTC	1 cut(s)	291
BfmI	CTRYAG	3 cut(s)	6, 413, 1125
BfoI	RGCGCY	3 cut(s)	581, 886, 918
BfuAI	ACCTGC	1 cut(s)	1118
BglI	GCCNNNNNGGC	2 cut(s)	722, 880
Bme1390I	CCNGG	5 cut(s)	31, 111, 766, 880, 1140
Bme18I	GGWCC	4 cut(s)	73, 551, 1136, 1324
BmgT120I	GGNCC	4 cut(s)	73, 551, 1136, 1324
BmiI	GGNNCC	6 cut(s)	74, 552, 694, 884, 1137, 1279
BmrFI	CCNGG	5 cut(s)	31, 111, 766, 880, 1140
BmsI	GCATC	3 cut(s)	291, 490, 703
BoxI	GACNNNNGTC	1 cut(s)	997
BpmI	CTGGAG	1 cut(s)	1016
Bpu10I	CCTNAGC	2 cut(s)	708, 780
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	31, 111
BsaHI	GRCGYC	3 cut(s)	134, 883, 1167
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	3 cut(s)	101, 129, 720
BsaXI	ACNNNNNCTCC	6 cut(s)	205, 235, 835, 865, 1242, 1272
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 1267
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	2 cut(s)	947, 999
Bse3DI	GCAATG	2 cut(s)	591, 939
BseBI	CCWGG	3 cut(s)	766, 880, 1140
BseDI	CCNNGG	3 cut(s)	101, 129, 720
BseGI	GGATG	3 cut(s)	39, 718, 1162
BseLI	CCNNNNNNNGG	2 cut(s)	93, 1267
BseMI	GCAATG	2 cut(s)	591, 939
BseMII	CTCAG	2 cut(s)	699, 771
BseNI	ACTGG	2 cut(s)	947, 999
BseRI	GAGGAG	2 cut(s)	768, 1068
BseYI	CCCAGC	2 cut(s)	405, 448
Bsh1236I	CGCG	1 cut(s)	735
BshFI	GGCC	4 cut(s)	97, 145, 565, 740
BshNI	GGYRCC	2 cut(s)	692, 882
BsiHKAI	GWGCWC	1 cut(s)	1260
BsiSI	CCGG	3 cut(s)	30, 111, 581
BslFI	GGGAC	4 cut(s)	86, 564, 1005, 1106
BslI	CCNNNNNNNGG	2 cut(s)	93, 1267
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	4 cut(s)	86, 564, 1005, 1106
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	4 cut(s)	97, 145, 565, 740
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	167, 1260
Bsp19I	CCATGG	3 cut(s)	101, 129, 720
BspACI	CCGC	7 cut(s)	98, 380, 443, 717, 733, 886, 938
BspANI	GGCC	4 cut(s)	97, 145, 565, 740
BspCNI	CTCAG	2 cut(s)	700, 772
BspFNI	CGCG	1 cut(s)	735
BspLI	GGNNCC	6 cut(s)	74, 552, 694, 884, 1137, 1279
BspMAI	CTGCAG	3 cut(s)	10, 417, 1129
BspMI	ACCTGC	1 cut(s)	1118
BspT107I	GGYRCC	2 cut(s)	692, 882
BspTNI	GGTCTC	1 cut(s)	291
BsrDI	GCAATG	2 cut(s)	591, 939
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	947, 999
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	101, 129, 720
BssNI	GRCGYC	3 cut(s)	134, 883, 1167
BssT1I	CCWWGG	3 cut(s)	101, 129, 720
Bst2UI	CCWGG	3 cut(s)	766, 880, 1140
Bst6I	CTCTTC	4 cut(s)	256, 960, 1288, 1297
BstACI	GRCGYC	3 cut(s)	134, 883, 1167
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstC8I	GCNNGC	2 cut(s)	582, 890
BstDEI	CTNAG	2 cut(s)	708, 780
BstDSI	CCRYGG	3 cut(s)	101, 129, 720
BstENI	CCTNNNNNAGG	1 cut(s)	91
BstF5I	GGATG	3 cut(s)	39, 718, 1162
BstFNI	CGCG	1 cut(s)	735
BstH2I	RGCGCY	3 cut(s)	581, 886, 918
BstHHI	GCGC	4 cut(s)	580, 885, 917, 1049
BstMAI	GTCTC	1 cut(s)	291
BstNI	CCWGG	3 cut(s)	766, 880, 1140
BstPAI	GACNNNNGTC	1 cut(s)	997
BstSCI	CCNGG	5 cut(s)	29, 109, 764, 878, 1138
BstSFI	CTRYAG	3 cut(s)	6, 413, 1125
BstUI	CGCG	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	97, 145, 565, 740
BtgI	CCRYGG	3 cut(s)	101, 129, 720
BtgZI	GCGATG	2 cut(s)	214, 545
BtsCI	GGATG	3 cut(s)	39, 718, 1162
BtsIMutI	CAGTG	1 cut(s)	975
BveI	ACCTGC	1 cut(s)	1118
Cac8I	GCNNGC	2 cut(s)	582, 890
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	4 cut(s)	580, 885, 917, 1049
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	4 cut(s)	73, 551, 1136, 1324
CseI	GACGC	2 cut(s)	123, 1175
CviAII	CATG	7 cut(s)	102, 130, 433, 721, 860, 962, 1096
DdeI	CTNAG	2 cut(s)	708, 780
DinI	GGCGCC	1 cut(s)	884
Eam1104I	CTCTTC	4 cut(s)	256, 960, 1288, 1297
EarI	CTCTTC	4 cut(s)	256, 960, 1288, 1297
EciI	GGCGGA	1 cut(s)	432
Eco130I	CCWWGG	3 cut(s)	101, 129, 720
Eco147I	AGGCCT	2 cut(s)	145, 740
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	393
Eco47I	GGWCC	4 cut(s)	73, 551, 1136, 1324
Eco47III	AGCGCT	1 cut(s)	916
Eco57I	CTGAAG	2 cut(s)	177, 470
EcoNI	CCTNNNNNAGG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRI	GAATTC	1 cut(s)	1063
EcoRII	CCWGG	3 cut(s)	764, 878, 1138
EcoRV	GATATC	1 cut(s)	393
EcoT14I	CCWWGG	3 cut(s)	101, 129, 720
EcoT38I	GRGCYC	1 cut(s)	167
EgeI	GGCGCC	1 cut(s)	884
EheI	GGCGCC	1 cut(s)	884
ErhI	CCWWGG	3 cut(s)	101, 129, 720
FaeI	CATG	7 cut(s)	105, 133, 436, 724, 863, 965, 1099
FalI	AAGNNNNNCTT	4 cut(s)	1095, 1127, 1298, 1330
FaqI	GGGAC	4 cut(s)	86, 564, 1005, 1106
FatI	CATG	7 cut(s)	101, 129, 432, 720, 859, 961, 1095
FokI	GGATG	3 cut(s)	46, 725, 1169
FriOI	GRGCYC	1 cut(s)	167
FspI	TGCGCA	1 cut(s)	1048
GlaI	GCGC	4 cut(s)	579, 884, 916, 1048
GsaI	CCCAGC	2 cut(s)	409, 452
GsuI	CTGGAG	1 cut(s)	1016
HaeII	RGCGCY	3 cut(s)	581, 886, 918
HaeIII	GGCC	4 cut(s)	97, 145, 565, 740
HapII	CCGG	3 cut(s)	30, 111, 581
HgaI	GACGC	2 cut(s)	123, 1175
HhaI	GCGC	4 cut(s)	580, 885, 917, 1049
Hin1I	GRCGYC	3 cut(s)	134, 883, 1167
Hin1II	CATG	7 cut(s)	105, 133, 436, 724, 863, 965, 1099
Hin6I	GCGC	4 cut(s)	578, 883, 915, 1047
HinP1I	GCGC	4 cut(s)	578, 883, 915, 1047
HindIII	AAGCTT	1 cut(s)	1104
HinfI	GANTC	5 cut(s)	401, 514, 676, 986, 998
HpaII	CCGG	3 cut(s)	30, 111, 581
HphI	GGTGA	1 cut(s)	342
Hpy188III	TCNNGA	5 cut(s)	91, 151, 160, 907, 990
Hpy99I	CGWCG	2 cut(s)	284, 457
HpyAV	CCTTC	6 cut(s)	97, 555, 671, 751, 1052, 1315
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	6 cut(s)	8, 304, 415, 1118, 1127, 1189
HpyF3I	CTNAG	2 cut(s)	708, 780
HpySE526I	ACGT	1 cut(s)	455
Hsp92I	GRCGYC	3 cut(s)	134, 883, 1167
Hsp92II	CATG	7 cut(s)	105, 133, 436, 724, 863, 965, 1099
HspAI	GCGC	4 cut(s)	578, 883, 915, 1047
KasI	GGCGCC	1 cut(s)	882
KroI	GCCGGC	1 cut(s)	580
KroNI	GCCGGC	1 cut(s)	582
LmnI	GCTCC	3 cut(s)	238, 832, 1263
LweI	GCATC	3 cut(s)	291, 490, 703
MaeII	ACGT	1 cut(s)	455
MhlI	GDGCHC	2 cut(s)	167, 1260
Mly113I	GGCGCC	1 cut(s)	883
MlyI	GAGTC	3 cut(s)	523, 670, 1007
MmeI	TCCRAC	2 cut(s)	839, 878
MroNI	GCCGGC	1 cut(s)	580
MroXI	GAANNNNTTC	1 cut(s)	1310
MseI	TTAA	1 cut(s)	1113
MslI	CAYNNNNRTG	2 cut(s)	332, 960
MspA1I	CMGCKG	2 cut(s)	412, 707
MspI	CCGG	3 cut(s)	30, 111, 581
MspR9I	CCNGG	5 cut(s)	31, 111, 766, 880, 1140
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	3 cut(s)	766, 880, 1140
MvnI	CGCG	1 cut(s)	735
NaeI	GCCGGC	1 cut(s)	582
NarI	GGCGCC	1 cut(s)	883
NciI	CCSGG	2 cut(s)	31, 111
NcoI	CCATGG	3 cut(s)	101, 129, 720
NgoMIV	GCCGGC	1 cut(s)	580
NlaIII	CATG	7 cut(s)	105, 133, 436, 724, 863, 965, 1099
NlaIV	GGNNCC	6 cut(s)	74, 552, 694, 884, 1137, 1279
NsbI	TGCGCA	1 cut(s)	1048
OliI	CACNNNNGTG	1 cut(s)	332
PceI	AGGCCT	2 cut(s)	145, 740
PcsI	WCGNNNNNNNCGW	1 cut(s)	664
PctI	GAATGC	1 cut(s)	766
PdiI	GCCGGC	1 cut(s)	582
PdmI	GAANNNNTTC	1 cut(s)	1310
PfeI	GAWTC	2 cut(s)	401, 986
PfoI	TCCNGGA	1 cut(s)	29
PleI	GAGTC	3 cut(s)	522, 670, 1006
PluTI	GGCGCC	1 cut(s)	886
PpsI	GAGTC	3 cut(s)	522, 670, 1006
PpuMI	RGGWCCY	1 cut(s)	73
PshAI	GACNNNNGTC	1 cut(s)	997
PsiI	TTATAA	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	764, 878, 1138
PspFI	CCCAGC	2 cut(s)	405, 448
PspGI	CCWGG	3 cut(s)	764, 878, 1138
PspN4I	GGNNCC	6 cut(s)	74, 552, 694, 884, 1137, 1279
PspPI	GGNCC	4 cut(s)	73, 551, 1136, 1324
PspPPI	RGGWCCY	1 cut(s)	73
PstI	CTGCAG	3 cut(s)	10, 417, 1129
PstNI	CAGNNNCTG	1 cut(s)	412
PvuII	CAGCTG	2 cut(s)	412, 707
RseI	CAYNNNNRTG	2 cut(s)	332, 960
SaqAI	TTAA	1 cut(s)	1113
Sau96I	GGNCC	4 cut(s)	73, 551, 1136, 1324
SbfI	CCTGCAGG	1 cut(s)	1129
SchI	GAGTC	3 cut(s)	523, 670, 1007
ScrFI	CCNGG	5 cut(s)	31, 111, 766, 880, 1140
SdaI	CCTGCAGG	1 cut(s)	1129
SduI	GDGCHC	2 cut(s)	167, 1260
SfaNI	GCATC	3 cut(s)	291, 490, 703
SfcI	CTRYAG	3 cut(s)	6, 413, 1125
SfoI	GGCGCC	1 cut(s)	884
SinI	GGWCC	4 cut(s)	73, 551, 1136, 1324
SmiMI	CAYNNNNRTG	2 cut(s)	332, 960
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse8387I	CCTGCAGG	1 cut(s)	1129
SseBI	AGGCCT	2 cut(s)	145, 740
SsiI	CCGC	7 cut(s)	98, 380, 443, 717, 733, 886, 938
SspDI	GGCGCC	1 cut(s)	882
StuI	AGGCCT	2 cut(s)	145, 740
StyD4I	CCNGG	5 cut(s)	29, 109, 764, 878, 1138
StyI	CCWWGG	3 cut(s)	101, 129, 720
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	5 cut(s)	90, 279, 574, 667, 1001
TauI	GCSGC	4 cut(s)	100, 719, 888, 940
TfiI	GAWTC	2 cut(s)	401, 986
Tru1I	TTAA	1 cut(s)	1113
Tru9I	TTAA	1 cut(s)	1113
TscAI	CASTG	1 cut(s)	982
TspDTI	ATGAA	4 cut(s)	554, 810, 978, 1284
TspGWI	ACGGA	2 cut(s)	258, 1055
TspRI	CASTG	1 cut(s)	982
VpaK11BI	GGWCC	4 cut(s)	73, 551, 1136, 1324
XagI	CCTNNNNNAGG	1 cut(s)	91
XapI	RAATTY	5 cut(s)	480, 508, 654, 1063, 1264
XmnI	GAANNNNTTC	1 cut(s)	1310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.