Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

17560809 .. 17563563

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G157100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGCTGCGGCTAAAAAAAGCGGTAAATCCAAGAAGGGTGTGGAGGAAAGCGAGATGGAAACAAGCCTGGATTGGGAGATTAACGAAGACAAGGACCTTGGTTTTAGCTTCGAGAGCCAGCCATGGAAGCTGGGTTTTAATGAAGCTTCCATGATGTCAAAGAGGCCTCTCAAGAAAATCAAGAGCCCTGAACGTCAAGACCCAATTCAATCCTCTGCTTCTTCAGCTCATCAAGCAACTTCATCAACCACTCCTTGTCCATCTTCATCATCTTCAAGAATAGTTTTTCCTTTTGCTTTTGATGGCTCTCAGCAGCCTGTTCAATTTCCCAACCAATTCAATACCACAGCTGTGCCTATATACCCCTCACCATTTTCACAACAACAGCAACAACAACAAAATCAGCAGCAAATGATCTCTTTTGCTTCTCAGCAGCAGCAGCAGCAGCAGCAACATGGCATGAGTTATCCCCCGCCCTTTCTCGGAGACTCAACAACTTGGCAACAACAGCAGCAGCATCAAATTCTCCAGTATTGGAGTGATGCTTTGAATTTAAGTCCAAGAGGGAGAGTTATGATGATGAACAGGTTGGGGCCTGATGGAAGACCATTGTTTCGACCGCCGGCAATGCCTTATAATACTACCAAGCTTTACAGGGGAGTGAGGCAACGGCATTGGGGGAAATGGGTAGCTGAAATTCGTCTCCCTCGAAACAGGACTCGCCTCTGGCTCGGCACCTTTGACACAGCTGAAGATGCTGCCATGGCTTATGACCGCGAGGCCTTCAAGTTGAGGGGAGAGAATGCTAGGCTTAATTTCCCTGAGCTGTTCCTCAATAAAGACAACACATCAGTTTCCACAGCTCCAAGCTCAACAGCTACTTCTCCAACAGCTCACGAAAGTTCAATGCCTACCACAACCAGGAACCGTAAGCAATCTCGTAAAGTTCAGAAAAACCCTAAAGCTTCAAATACGGAGGCAATGCCACCACCACCGCCACCACAGGCACATACCGAAGAAGACAATACCGATGACGATTCGGGATTGGGGTCAAGTGAAGCTAAAACGAGTGATGAATTTCAGGCGAATATGAATGCTGCAGGAGGAGGTAATTCACAGCCGGAGGAATTGGTTTGGGGGGATATGGCAGAGGCTTGGATGAATGCAATTCCAGCAGGTTGGGGTCCAGGAAGTCCTGTGTGGGATGATTTGGACACCAACAACAATCTTTTGCTGCAATCACATCTCCCTTTTACCAATCCAAATCAGCAGAACTTTAATAACATTTGTCCTGAACTTGAAAGGCAGCAAGACCACTCGGGTTCGGCCTCCTCCTCTTCCTCTTCATATCCCTTGAAGAACTTCTTTTGGAAGGACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

462

Amino Acids

51.71

Weight (kDa)

5.97

Isoelectric Point (pI)

66.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
Acc36I	ACCTGC	1 cut(s)	1166
AccB1I	GGYRCC	1 cut(s)	734
AccII	CGCG	1 cut(s)	777
AciI	CCGC	6 cut(s)	8, 21, 473, 620, 775, 995
AcsI	RAATTY	4 cut(s)	522, 550, 696, 1076
AcuI	CTGAAG	2 cut(s)	207, 771
AfiI	CCNNNNNNNGG	3 cut(s)	73, 482, 921
AjnI	CCWGG	3 cut(s)	66, 920, 1186
AleI	CACNNNNGTG	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	480, 707
Ama87I	CYCGRG	1 cut(s)	1318
AoxI	GGCC	4 cut(s)	164, 593, 780, 1326
ApoI	RAATTY	4 cut(s)	522, 550, 696, 1076
ArsI	GACNNNNNNTTYG	2 cut(s)	597, 629
Asp700I	GAANNNNTTC	1 cut(s)	1361
AspS9I	GGNCC	4 cut(s)	94, 593, 1184, 1375
AsuHPI	GGTGA	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	1318
AvaII	GGWCC	3 cut(s)	94, 1184, 1375
BanI	GGYRCC	1 cut(s)	734
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	3 cut(s)	93, 610, 1026
BccI	CCATC	4 cut(s)	49, 268, 296, 593
BceAI	ACGGC	1 cut(s)	686
BciT130I	CCWGG	3 cut(s)	68, 922, 1188
BcoDI	GTCTC	2 cut(s)	480, 707
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	1 cut(s)	1098
BfuAI	ACCTGC	1 cut(s)	1166
Bme1390I	CCNGG	3 cut(s)	68, 922, 1188
Bme18I	GGWCC	3 cut(s)	94, 1184, 1375
BmeT110I	CYCGRG	1 cut(s)	1318
BmgT120I	GGNCC	4 cut(s)	94, 593, 1184, 1375
BmiI	GGNNCC	4 cut(s)	594, 736, 926, 1185
BmrFI	CCNGG	3 cut(s)	68, 922, 1188
BmsI	GCATC	3 cut(s)	526, 532, 745
BpiI	GAAGAC	3 cut(s)	93, 610, 1026
BpmI	CTGGAG	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	97, 122, 762
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 482, 921
Bse118I	RCCGGY	1 cut(s)	622
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	2 cut(s)	633, 987
BseBI	CCWGG	3 cut(s)	68, 922, 1188
BseDI	CCNNGG	3 cut(s)	97, 122, 762
BseGI	GGATG	2 cut(s)	1164, 1210
BseLI	CCNNNNNNNGG	3 cut(s)	73, 482, 921
BseMI	GCAATG	2 cut(s)	633, 987
BseMII	CTCAG	3 cut(s)	323, 443, 813
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	3 cut(s)	1119, 1321, 1324
BseYI	CCCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	777
Bsh1285I	CGRYCG	1 cut(s)	620
BshFI	GGCC	4 cut(s)	166, 595, 782, 1328
BshNI	GGYRCC	1 cut(s)	734
BsiEI	CGRYCG	1 cut(s)	620
BsiHKCI	CYCGRG	1 cut(s)	1318
BsiSI	CCGG	2 cut(s)	623, 1121
BslI	CCNNNNNNNGG	3 cut(s)	73, 482, 921
BsmAI	GTCTC	2 cut(s)	480, 707
BsmBI	CGTCTC	1 cut(s)	707
BsmI	GAATGC	3 cut(s)	808, 1099, 1168
BsnI	GGCC	4 cut(s)	166, 595, 782, 1328
BsoBI	CYCGRG	1 cut(s)	1318
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	414
Bsp19I	CCATGG	2 cut(s)	122, 762
BspACI	CCGC	6 cut(s)	8, 21, 473, 620, 775, 995
BspANI	GGCC	4 cut(s)	166, 595, 782, 1328
BspCNI	CTCAG	3 cut(s)	322, 442, 814
BspFNI	CGCG	1 cut(s)	777
BspLI	GGNNCC	4 cut(s)	594, 736, 926, 1185
BspMAI	CTGCAG	1 cut(s)	1102
BspMI	ACCTGC	1 cut(s)	1166
BspT107I	GGYRCC	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	633, 987
BsrFI	RCCGGY	1 cut(s)	622
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	622
BssECI	CCNNGG	3 cut(s)	97, 122, 762
BssMI	GATC	1 cut(s)	414
BssT1I	CCWWGG	3 cut(s)	97, 122, 762
Bst2UI	CCWGG	3 cut(s)	68, 922, 1188
Bst4CI	ACNGT	1 cut(s)	929
Bst6I	CTCTTC	2 cut(s)	1342, 1348
BstC8I	GCNNGC	2 cut(s)	119, 624
BstDEI	CTNAG	3 cut(s)	309, 429, 822
BstDSI	CCRYGG	2 cut(s)	122, 762
BstF5I	GGATG	2 cut(s)	1164, 1210
BstFNI	CGCG	1 cut(s)	777
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	2 cut(s)	480, 707
BstMBI	GATC	1 cut(s)	414
BstMCI	CGRYCG	1 cut(s)	620
BstNI	CCWGG	3 cut(s)	68, 922, 1188
BstSCI	CCNGG	3 cut(s)	66, 920, 1186
BstSFI	CTRYAG	1 cut(s)	1098
BstUI	CGCG	1 cut(s)	777
BstV2I	GAAGAC	3 cut(s)	93, 610, 1026
BstXI	CCANNNNNNTGG	1 cut(s)	1179
BsuRI	GGCC	4 cut(s)	166, 595, 782, 1328
BtgI	CCRYGG	2 cut(s)	122, 762
BtsCI	GGATG	2 cut(s)	1164, 1210
BveI	ACCTGC	1 cut(s)	1166
Cac8I	GCNNGC	2 cut(s)	119, 624
Cfr10I	RCCGGY	1 cut(s)	622
Cfr13I	GGNCC	4 cut(s)	94, 593, 1184, 1375
CviAII	CATG	5 cut(s)	123, 151, 455, 460, 763
DdeI	CTNAG	3 cut(s)	309, 429, 822
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	1342, 1348
EarI	CTCTTC	2 cut(s)	1342, 1348
Eco130I	CCWWGG	3 cut(s)	97, 122, 762
Eco147I	AGGCCT	2 cut(s)	166, 782
Eco24I	GRGCYC	1 cut(s)	188
Eco47I	GGWCC	3 cut(s)	94, 1184, 1375
Eco57I	CTGAAG	2 cut(s)	207, 771
Eco88I	CYCGRG	1 cut(s)	1318
EcoO109I	RGGNCCY	2 cut(s)	94, 593
EcoRII	CCWGG	3 cut(s)	66, 920, 1186
EcoT14I	CCWWGG	3 cut(s)	97, 122, 762
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	3 cut(s)	97, 122, 762
Esp3I	CGTCTC	1 cut(s)	707
FaeI	CATG	5 cut(s)	126, 154, 458, 463, 766
FalI	AAGNNNNNCTT	2 cut(s)	1349, 1381
FatI	CATG	5 cut(s)	122, 150, 454, 459, 762
FauI	CCCGC	1 cut(s)	480
FokI	GGATG	2 cut(s)	1171, 1217
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	1 cut(s)	807
GsaI	CCCAGC	1 cut(s)	134
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	4 cut(s)	166, 595, 782, 1328
HapII	CCGG	2 cut(s)	623, 1121
Hin1II	CATG	5 cut(s)	126, 154, 458, 463, 766
HindIII	AAGCTT	3 cut(s)	144, 647, 963
HinfI	GANTC	3 cut(s)	488, 718, 1037
HpaII	CCGG	2 cut(s)	623, 1121
HphI	GGTGA	1 cut(s)	360
Hpy188I	TCNGA	2 cut(s)	485, 951
Hpy188III	TCNNGA	8 cut(s)	112, 172, 181, 197, 276, 896, 1041, 1292
HpyAV	CCTTC	3 cut(s)	28, 793, 1366
HpyCH4III	ACNGT	1 cut(s)	929
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	1100, 1166, 1237
HpyF3I	CTNAG	3 cut(s)	309, 429, 822
HpySE526I	ACGT	1 cut(s)	193
Hsp92II	CATG	5 cut(s)	126, 154, 458, 463, 766
KroI	GCCGGC	1 cut(s)	622
KroNI	GCCGGC	1 cut(s)	624
Kzo9I	GATC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	868
LweI	GCATC	3 cut(s)	526, 532, 745
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	416
MboI	GATC	1 cut(s)	414
MhlI	GDGCHC	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	482, 712
MmeI	TCCRAC	1 cut(s)	911
MroNI	GCCGGC	1 cut(s)	622
MroXI	GAANNNNTTC	1 cut(s)	1361
MseI	TTAA	5 cut(s)	81, 138, 554, 813, 1278
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	2 cut(s)	350, 749
MspI	CCGG	2 cut(s)	623, 1121
MspR9I	CCNGG	3 cut(s)	68, 922, 1188
Mva1269I	GAATGC	3 cut(s)	808, 1099, 1168
MvaI	CCWGG	3 cut(s)	68, 922, 1188
MvnI	CGCG	1 cut(s)	777
NaeI	GCCGGC	1 cut(s)	624
NcoI	CCATGG	2 cut(s)	122, 762
NdeII	GATC	1 cut(s)	414
NgoMIV	GCCGGC	1 cut(s)	622
NlaIII	CATG	5 cut(s)	126, 154, 458, 463, 766
NlaIV	GGNNCC	4 cut(s)	594, 736, 926, 1185
NmeAIII	GCCGAG	1 cut(s)	711
OliI	CACNNNNGTG	1 cut(s)	350
PceI	AGGCCT	2 cut(s)	166, 782
PcsI	WCGNNNNNNNCGW	1 cut(s)	706
PctI	GAATGC	3 cut(s)	808, 1099, 1168
PdiI	GCCGGC	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	1361
PfeI	GAWTC	1 cut(s)	1037
PfoI	TCCNGGA	1 cut(s)	1186
PleI	GAGTC	2 cut(s)	482, 712
PpsI	GAGTC	2 cut(s)	482, 712
PpuMI	RGGWCCY	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	636
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	3 cut(s)	66, 920, 1186
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	3 cut(s)	66, 920, 1186
PspN4I	GGNNCC	4 cut(s)	594, 736, 926, 1185
PspPI	GGNCC	4 cut(s)	94, 593, 1184, 1375
PspPPI	RGGWCCY	1 cut(s)	94
PstI	CTGCAG	1 cut(s)	1102
PvuII	CAGCTG	2 cut(s)	350, 749
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	5 cut(s)	81, 138, 554, 813, 1278
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	4 cut(s)	94, 593, 1184, 1375
SchI	GAGTC	2 cut(s)	482, 712
ScrFI	CCNGG	3 cut(s)	68, 922, 1188
SduI	GDGCHC	1 cut(s)	188
SfaNI	GCATC	3 cut(s)	526, 532, 745
SfcI	CTRYAG	1 cut(s)	1098
SinI	GGWCC	3 cut(s)	94, 1184, 1375
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SseBI	AGGCCT	2 cut(s)	166, 782
SsiI	CCGC	6 cut(s)	8, 21, 473, 620, 775, 995
SspMI	CTAG	1 cut(s)	807
StuI	AGGCCT	2 cut(s)	166, 782
StyD4I	CCNGG	3 cut(s)	66, 920, 1186
StyI	CCWWGG	3 cut(s)	97, 122, 762
TaaI	ACNGT	1 cut(s)	929
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	3 cut(s)	111, 616, 709
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	1037
Tru1I	TTAA	5 cut(s)	81, 138, 554, 813, 1278
Tru9I	TTAA	5 cut(s)	81, 138, 554, 813, 1278
TspDTI	ATGAA	8 cut(s)	156, 231, 255, 596, 1089, 1106, 1175, 1335
TspGWI	ACGGA	1 cut(s)	989
VpaK11BI	GGWCC	3 cut(s)	94, 1184, 1375
XapI	RAATTY	4 cut(s)	522, 550, 696, 1076
XcmI	CCANNNNNNNNNTGG	1 cut(s)	37
XmnI	GAANNNNTTC	1 cut(s)	1361
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.