Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

13974493 .. 13975919

Gene Structure 1427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGACTTTGACGAGGAGCTAAATCTTTGTATTACGAAAGGTAAAAATGTTGATCATTCTTTTGGAGGAGAAGCTTCTTCCACGTCCCCAAGATCTATGAAGAAAATGAAGAGTCCTAGTCGTCCTAAACCCTATTTCCAATCCTCTTCTTCTCCTTATTCGTTAGAGGCTTTCCCTTTTTCTCTCGATCCAACACTTCAGAATCAGCAACAACAACTCGGATCATACGTTCCGGTACTTGAGCAACGACAAGACCCGACAATGCAAGGCCAGAAGCAAATGATCTCCTTTAGTCCTCAACAACAACAACAGCAGCAGCAGTATATGGCCCAGTACTGGAGTGACACATTGAATCTGAGTCCAAGAGGAAGAATGATGATGATGATGAGCCAAGAAGCTGTTCAACCTTACATCGCAACGAAGCTGTACAGAGGAGTGAGACAACGTCAATGGGGAAAATGGGTCGCAGAGATCCGTAAGCCACGAAGCAGGGCACGTCTTTGGCTTGGTACCTTTGATACAGCTGAAGAAGCTGCCATGGCCTACGACCGCCAAGCCTTCAAATTACGAGGCCACAGCGCAACACTGAATTTCCCGGAGCATTTTGTGAATAAGGAAAGCGAGCTGCATGATTCAAACTCGTCGGATCAGAAAGAACCTGAAACGCCACAGCCAAGCGAGGTTAACTTGGAGAGCAAGGAACTACCGGTGATTGATGTTGGGAGAGAGGAAGGTATGGCTGAGGCATGGTACAATGCCATTACATCGGGATGGGGTCCTGAAAGTCCTCTTTGGGATGATTTGGATAGTTCTCATCAGTTTTCATCAGAAAGCTCATCTTCTTCTCCTCTCTCTTGTCCTATGAGGCCTTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

292

Amino Acids

33.4

Weight (kDa)

5.5

Isoelectric Point (pI)

71.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	142 - 192	4.9e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	1 cut(s)	550
AclWI	GGATC	4 cut(s)	182, 229, 466, 654
AcsI	RAATTY	1 cut(s)	589
AcuI	CTGAAG	2 cut(s)	182, 546
AfaI	GTAC	5 cut(s)	237, 335, 428, 511, 752
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgeI	ACCGGT	1 cut(s)	706
AgsI	TTSAA	4 cut(s)	352, 404, 562, 636
AjiI	CACGTC	2 cut(s)	84, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	8 cut(s)	19, 74, 398, 424, 524, 533, 625, 834
AluI	AGCT	8 cut(s)	19, 74, 398, 424, 524, 533, 625, 834
Alw26I	GTCTC	1 cut(s)	433
AlwI	GGATC	4 cut(s)	182, 229, 466, 654
AoxI	GGCC	5 cut(s)	268, 327, 540, 571, 866
ApeKI	GCWGC	4 cut(s)	313, 316, 533, 625
ApoI	RAATTY	1 cut(s)	589
AsiGI	ACCGGT	1 cut(s)	706
Asp700I	GAANNNNTTC	1 cut(s)	399
Asp718I	GGTACC	1 cut(s)	509
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	2 cut(s)	328, 776
AsuC2I	CCSGG	1 cut(s)	596
AsuHPI	GGTGA	1 cut(s)	721
AvaII	GGWCC	1 cut(s)	776
BaeGI	GKGCMC	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	509
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	325, 328, 520, 612
BccI	CCATC	1 cut(s)	765
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	596
BcoDI	GTCTC	1 cut(s)	433
BfaI	CTAG	1 cut(s)	117
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	4 cut(s)	314, 317, 534, 626
BlsI	GCNGC	4 cut(s)	315, 318, 535, 627
BmcAI	AGTACT	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	596
Bme18I	GGWCC	1 cut(s)	776
BmgBI	CACGTC	2 cut(s)	84, 497
BmgT120I	GGNCC	2 cut(s)	328, 776
BmiI	GGNNCC	2 cut(s)	511, 777
BmrFI	CCNGG	1 cut(s)	596
BmrI	ACTGGG	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	596
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	2 cut(s)	232, 706
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	331, 341
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	2 cut(s)	776, 802
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	347, 732
BseNI	ACTGG	2 cut(s)	331, 341
BseRI	GAGGAG	4 cut(s)	29, 81, 447, 837
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	4 cut(s)	325, 328, 520, 612
Bsh1285I	CGRYCG	1 cut(s)	550
BshFI	GGCC	5 cut(s)	270, 329, 542, 573, 868
BshNI	GGYRCC	1 cut(s)	509
BshTI	ACCGGT	1 cut(s)	706
BsiEI	CGRYCG	1 cut(s)	550
BsiSI	CCGG	3 cut(s)	233, 596, 707
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	5 cut(s)	270, 329, 542, 573, 868
Bsp1286I	GDGCHC	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
Bsp19I	CCATGG	1 cut(s)	537
BspACI	CCGC	1 cut(s)	550
BspANI	GGCC	5 cut(s)	270, 329, 542, 573, 868
BspCNI	CTCAG	2 cut(s)	348, 733
BspLI	GGNNCC	2 cut(s)	511, 777
BspPI	GGATC	4 cut(s)	182, 229, 466, 654
BspT107I	GGYRCC	1 cut(s)	509
BsrFI	RCCGGY	1 cut(s)	706
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	331, 341
BssAI	RCCGGY	1 cut(s)	706
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
BssT1I	CCWWGG	1 cut(s)	537
Bst6I	CTCTTC	2 cut(s)	104, 151
BstAUI	TGTACA	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	2 cut(s)	356, 741
BstDSI	CCRYGG	1 cut(s)	537
BstF5I	GGATG	2 cut(s)	776, 802
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	7 cut(s)	55, 95, 190, 224, 285, 474, 649
BstMAI	GTCTC	1 cut(s)	433
BstMBI	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
BstMCI	CGRYCG	1 cut(s)	550
BstMWI	GCNNNNNNNGC	2 cut(s)	530, 539
BstSCI	CCNGG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	4 cut(s)	325, 328, 520, 612
BstX2I	RGATCY	2 cut(s)	92, 471
BstYI	RGATCY	2 cut(s)	92, 471
BsuRI	GGCC	5 cut(s)	270, 329, 542, 573, 868
BtgI	CCRYGG	1 cut(s)	537
BtgZI	GCGATG	1 cut(s)	397
BtrI	CACGTC	2 cut(s)	84, 497
BtsCI	GGATG	2 cut(s)	776, 802
BtsIMutI	CAGTG	1 cut(s)	584
Cac8I	GCNNGC	1 cut(s)	623
CfoI	GCGC	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	706
Cfr13I	GGNCC	2 cut(s)	328, 776
Csp6I	GTAC	5 cut(s)	236, 334, 427, 510, 751
CspAI	ACCGGT	1 cut(s)	706
CviAII	CATG	3 cut(s)	538, 629, 747
CviQI	GTAC	5 cut(s)	236, 334, 427, 510, 751
DdeI	CTNAG	2 cut(s)	356, 741
DpnI	GATC	7 cut(s)	54, 94, 189, 223, 284, 473, 648
DpnII	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
Eam1104I	CTCTTC	2 cut(s)	104, 151
EarI	CTCTTC	2 cut(s)	104, 151
Eco130I	CCWWGG	1 cut(s)	537
Eco147I	AGGCCT	1 cut(s)	868
Eco47I	GGWCC	1 cut(s)	776
Eco57I	CTGAAG	2 cut(s)	182, 546
EcoO109I	RGGNCCY	1 cut(s)	776
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	3 cut(s)	541, 632, 750
FaiI	YATR	9 cut(s)	98, 226, 324, 326, 539, 630, 737, 748, 863
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	3 cut(s)	537, 628, 746
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	314, 317, 534, 626
FokI	GGATG	2 cut(s)	783, 809
Fsp4HI	GCNGC	4 cut(s)	314, 317, 534, 626
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	4 cut(s)	314, 317, 534, 626
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	5 cut(s)	270, 329, 542, 573, 868
HapII	CCGG	3 cut(s)	233, 596, 707
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	3 cut(s)	541, 632, 750
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	5 cut(s)	112, 202, 352, 358, 632
HpaI	GTTAAC	1 cut(s)	685
HpaII	CCGG	3 cut(s)	233, 596, 707
HphI	GGTGA	1 cut(s)	721
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	6 cut(s)	201, 221, 357, 646, 651, 829
Hpy188III	TCNNGA	3 cut(s)	185, 768, 779
Hpy8I	GTNNAC	1 cut(s)	685
Hpy99I	CGWCG	1 cut(s)	646
HpyAV	CCTTC	2 cut(s)	568, 725
HpyCH4IV	ACGT	4 cut(s)	83, 228, 445, 496
HpyCH4V	TGCA	2 cut(s)	265, 628
HpyF10VI	GCNNNNNNNGC	2 cut(s)	530, 539
HpyF3I	CTNAG	2 cut(s)	356, 741
HpySE526I	ACGT	4 cut(s)	83, 228, 445, 496
Hsp92II	CATG	3 cut(s)	541, 632, 750
HspAI	GCGC	1 cut(s)	579
KpnI	GGTACC	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	685
Kzo9I	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
LmnI	GCTCC	2 cut(s)	16, 598
LpnPI	CCDG	9 cut(s)	246, 284, 322, 344, 475, 609, 672, 720, 792
Lsp1109I	GCAGC	4 cut(s)	325, 328, 520, 612
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	4 cut(s)	83, 228, 445, 496
MaeIII	GTNAC	1 cut(s)	341
MalI	GATC	7 cut(s)	54, 94, 189, 223, 284, 473, 648
MboI	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
MboII	GAAGA	9 cut(s)	69, 112, 121, 138, 141, 381, 539, 831, 834
MflI	RGATCY	2 cut(s)	92, 471
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	2 cut(s)	563, 589
MlyI	GAGTC	2 cut(s)	121, 367
MmeI	TCCRAC	2 cut(s)	215, 624
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	684
MslI	CAYNNNNRTG	1 cut(s)	769
MspA1I	CMGCKG	1 cut(s)	524
MspI	CCGG	3 cut(s)	233, 596, 707
MspR9I	CCNGG	1 cut(s)	596
MwoI	GCNNNNNNNGC	2 cut(s)	530, 539
NciI	CCSGG	1 cut(s)	596
NcoI	CCATGG	1 cut(s)	537
NdeII	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
NlaIII	CATG	3 cut(s)	541, 632, 750
NlaIV	GGNNCC	2 cut(s)	511, 777
NmuCI	GTSAC	1 cut(s)	341
PceI	AGGCCT	1 cut(s)	868
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	202, 352, 632
PflFI	GACNNNGTC	1 cut(s)	444
PfoI	TCCNGGA	1 cut(s)	594
PinAI	ACCGGT	1 cut(s)	706
PkrI	GCNGC	4 cut(s)	315, 318, 535, 627
PleI	GAGTC	2 cut(s)	120, 366
PpsI	GAGTC	2 cut(s)	120, 366
PpuMI	RGGWCCY	1 cut(s)	776
Psp5II	RGGWCCY	1 cut(s)	776
PspN4I	GGNNCC	2 cut(s)	511, 777
PspPI	GGNCC	2 cut(s)	328, 776
PspPPI	RGGWCCY	1 cut(s)	776
PsuI	RGATCY	2 cut(s)	92, 471
PsyI	GACNNNGTC	1 cut(s)	444
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	5 cut(s)	237, 335, 428, 511, 752
RsaNI	GTAC	5 cut(s)	236, 334, 427, 510, 751
RseI	CAYNNNNRTG	1 cut(s)	769
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	4 cut(s)	314, 317, 534, 626
Sau3AI	GATC	7 cut(s)	52, 92, 187, 221, 282, 471, 646
Sau96I	GGNCC	2 cut(s)	328, 776
ScaI	AGTACT	1 cut(s)	335
SchI	GAGTC	2 cut(s)	121, 367
ScrFI	CCNGG	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	496
SinI	GGWCC	1 cut(s)	776
SmiMI	CAYNNNNRTG	1 cut(s)	769
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	563, 589
SseBI	AGGCCT	1 cut(s)	868
SsiI	CCGC	1 cut(s)	550
SspMI	CTAG	1 cut(s)	117
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	537
TaiI	ACGT	4 cut(s)	86, 231, 448, 499
TaqI	TCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	563, 589
TatI	WGTACW	2 cut(s)	333, 426
TfiI	GAWTC	3 cut(s)	202, 352, 632
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	1 cut(s)	591
TseFI	GTSAC	1 cut(s)	341
TseI	GCWGC	4 cut(s)	313, 316, 533, 625
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	3 cut(s)	113, 122, 813
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	591
Tth111I	GACNNNGTC	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	776
XapI	RAATTY	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	117
ZrmI	AGTACT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.