RchiOBHm_Chr2g0126301

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0013015
Physical Location & Seq
Reverse (-)
40599757 .. 40602173
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49830

Sequence Viewer

Length: 1401 bp
ATGGCCACAGCTAAAGGGAGTGGTGAATCAAACAATGAAACTCGGATGGAAACAAGCCGAGATTGTGACCTTGACAAGGGCAAGGAACGTGATTTTTTCTTGGAGAGTTGTCAATGGAAGCCGGTTTTTGATGAAGCTTCAATGTCACATAGACCTCTTAAGAAGATCAAGAGCCCTGAACGTAGTCATCAGCACCAATCCTCCTCTGCTTTTCCCCCTGAATTTCATATCCCATCTTCTCCTCCTCGTAGTTCATCAGATACATCATCAATCACTTCTTGTAGTCCTTTTTCTTCCAGAATAGTCTTTCCTTTTGCTTTTGATGGGTCCCTGCCTCAGCAGCAGCAACCTATACAATTTCCCCACCAATTCCAGACCACAGGTCTGCAGCCTATACAATTCCCGCCAACTACAAATGTTGTAGAGCAGCAGCAGCAGCAACAACAAAATCAGCAGCAGATGATATCTTTCGCATCGCAGCAGCAACAAATGATATCTTGGCGGCAGCAGCAGCAACAGCAAATGCTTCAGTATTGGAGTGATGCTTTGAATTTGAGTCCAAGAGGAAGGATGATGATGATGAACAGGTTTGGAGGAGCTAATAGTAGTGGTGGTATTAGGCCAGCGGCGATGCCTGTAAGTACTAGTAAGCTTTACAGGGGAGTAAGGCAAAGGCATTGGGGCAAATGGGTAGCTGAAATTCGTCTTCCTCGAAACAGGACTCGCCTCTGGCTGGGCACCTTCGACACCGCTGAAGATGCTGCCATGGCTTATGACCGTGAGGCTTTCAAGTTGAGAGGAGAGAATGCTAAGCTTAATTTCCCTGAGCTTTTCCTCAACAAAGACAAAGATAATAATAATGCTGCAGCTGTTTCCACAGCTCCAAGTTCAACCGAAACTGCTTCTGTGCCGACTCAACAAGTTTCAAAGCCATCCAGGCACCGGGGTAAGCCGCTACTGAAAGACCTTGATTTACAATTACAGGTTCCAATTTCAGATAGGGAAACAATTGCACCTCCACCAGCGCCATATTCACATCCCCAGGAAGACGATGACACTGGTGAAAGTGATTTGGCCAATGCCAGCCAGCAATCTGAGGTTGAAAATCATGGCGAAGGAGGAGGGATCATTTCAGATGCCCCAACACAGGAAATGGCTTGGGGAGAAATGGCAGAGGCTTGGATGAATGCAATTCCACAAGGTTGGGGTCCTGGTAGTCCTGTCTGGGATGATTTAGAGTTGGACATGACTTCCAACAATCTTGTGCTGCAATCTCATGATTATCACCATTTTACGGCCAATAATCCGAATCGGCATGAACTTCCGCAGCAGGAAGACAACTCTTGTTCTGCTTCATCTTCATATCCCATGCAGCCCTTCTTTTGGAAAGATCAAGATTGA

Protein Analysis

466

Amino Acids

52.52

Weight (kDa)

5.5

Isoelectric Point (pI)

62.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 218 - 267 1.9e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20880 AT4G28140
fragaria_vesca FvH4_6g26090
malus_domestica MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica Prupe.3G157100_v2.0.a1
pyrus_communis pycom09g16830 pycom17g24710
rosa_chinensis RchiOBHm_Chr2g0126301
rosa_laevigata RLG00000018898
rosa_multiflora Rmu_ssc0000264.1_g000034
rosa_roxburghii Rroxscaffold_2G00117280
rosa_rugosa Rorug02G0262400
rosa_samantha Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana Rw2G025870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 737, 939
AciI CCGC 6 cut(s) 404, 502, 626, 750, 953, 1325
AclWI GGATC 1 cut(s) 1133
AcoI YGGCCR 3 cut(s) 3, 1074, 1296
AcsI RAATTY 3 cut(s) 221, 550, 699
AcuI CTGAAG 2 cut(s) 512, 774
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 6 cut(s) 76, 733, 942, 1147, 1294, 1383
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 6 cut(s) 141, 550, 790, 891, 927, 1103
AhdI GACNNNNNGTC 1 cut(s) 381
AhlI ACTAGT 1 cut(s) 644
AjnI CCWGG 3 cut(s) 935, 1041, 1210
AluBI AGCT 9 cut(s) 11, 137, 599, 652, 695, 814, 829, 869, 881
AluI AGCT 9 cut(s) 11, 137, 599, 652, 695, 814, 829, 869, 881
AlwI GGATC 1 cut(s) 1133
AoxI GGCC 4 cut(s) 3, 620, 1074, 1296
ApoI RAATTY 3 cut(s) 221, 550, 699
AspLEI GCGC 1 cut(s) 1027
AspS9I GGNCC 2 cut(s) 327, 1208
AsuC2I CCSGG 1 cut(s) 944
AsuHPI GGTGA 3 cut(s) 35, 1073, 1277
AvaII GGWCC 2 cut(s) 327, 1208
BaeGI GKGCMC 1 cut(s) 740
BalI TGGCCA 2 cut(s) 5, 1076
BanI GGYRCC 2 cut(s) 737, 939
BanII GRGCYC 1 cut(s) 176
BbsI GAAGAC 3 cut(s) 698, 1053, 1341
BbvCI CCTCAGC 1 cut(s) 336
BccI CCATC 4 cut(s) 40, 241, 317, 940
BceAI ACGGC 1 cut(s) 1311
BciT130I CCWGG 3 cut(s) 937, 1043, 1212
BcnI CCSGG 1 cut(s) 944
BcuI ACTAGT 1 cut(s) 644
BfaI CTAG 1 cut(s) 645
BfmI CTRYAG 2 cut(s) 386, 864
BfoI RGCGCY 1 cut(s) 1028
BfrI CTTAAG 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 937
BlpI GCTNAGC 1 cut(s) 810
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 4 cut(s) 937, 944, 1043, 1212
Bme18I GGWCC 2 cut(s) 327, 1208
BmeRI GACNNNNNGTC 1 cut(s) 381
BmgT120I GGNCC 2 cut(s) 327, 1208
BmiI GGNNCC 6 cut(s) 328, 329, 739, 941, 987, 1209
BmrFI CCNGG 4 cut(s) 937, 944, 1043, 1212
BmsI GCATC 5 cut(s) 482, 532, 621, 748, 1126
BpiI GAAGAC 3 cut(s) 698, 1053, 1341
Bpu10I CCTNAGC 2 cut(s) 336, 825
Bpu1102I GCTNAGC 1 cut(s) 810
BpuMI CCSGG 1 cut(s) 944
BsaJI CCNNGG 3 cut(s) 765, 943, 1041
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 733, 942, 1147, 1294, 1383
Bse118I RCCGGY 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 1063
BseBI CCWGG 3 cut(s) 937, 1043, 1212
BseDI CCNNGG 3 cut(s) 765, 943, 1041
BseGI GGATG 6 cut(s) 51, 576, 932, 1036, 1188, 1234
BseLI CCNNNNNNNGG 6 cut(s) 76, 733, 942, 1147, 1294, 1383
BseMII CTCAG 3 cut(s) 350, 816, 1086
BseNI ACTGG 1 cut(s) 1063
BseRI GAGGAG 6 cut(s) 193, 231, 234, 609, 813, 1134
BseSI GKGCMC 1 cut(s) 740
BseYI CCCAGC 1 cut(s) 733
BshFI GGCC 4 cut(s) 5, 622, 1076, 1298
BshNI GGYRCC 2 cut(s) 737, 939
BsiSI CCGG 2 cut(s) 122, 943
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 6 cut(s) 76, 733, 942, 1147, 1294, 1383
BsmFI GGGAC 1 cut(s) 313
BsmI GAATGC 2 cut(s) 811, 1192
BsnI GGCC 4 cut(s) 5, 622, 1076, 1298
Bsp1286I GDGCHC 2 cut(s) 176, 740
Bsp143I GATC 3 cut(s) 165, 1125, 1390
Bsp1720I GCTNAGC 1 cut(s) 810
Bsp19I CCATGG 1 cut(s) 765
BspACI CCGC 6 cut(s) 404, 502, 626, 750, 953, 1325
BspANI GGCC 4 cut(s) 5, 622, 1076, 1298
BspCNI CTCAG 3 cut(s) 349, 817, 1087
BspHI TCATGA 1 cut(s) 1276
BspLI GGNNCC 6 cut(s) 328, 329, 739, 941, 987, 1209
BspMAI CTGCAG 2 cut(s) 390, 868
BspPI GGATC 1 cut(s) 1133
BspT107I GGYRCC 2 cut(s) 737, 939
BspTI CTTAAG 1 cut(s) 158
BsrFI RCCGGY 1 cut(s) 121
BsrI ACTGG 1 cut(s) 1063
BssAI RCCGGY 1 cut(s) 121
BssECI CCNNGG 3 cut(s) 765, 943, 1041
BssMI GATC 3 cut(s) 165, 1125, 1390
BssT1I CCWWGG 1 cut(s) 765
Bst2UI CCWGG 3 cut(s) 937, 1043, 1212
Bst4CI ACNGT 1 cut(s) 779
BstAFI CTTAAG 1 cut(s) 158
BstC8I GCNNGC 3 cut(s) 624, 1084, 1088
BstDEI CTNAG 4 cut(s) 336, 810, 825, 1095
BstDSI CCRYGG 1 cut(s) 765
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 6 cut(s) 51, 576, 932, 1036, 1188, 1234
BstH2I RGCGCY 1 cut(s) 1028
BstHHI GCGC 1 cut(s) 1027
BstKTI GATC 3 cut(s) 168, 1128, 1393
BstMBI GATC 3 cut(s) 165, 1125, 1390
BstMWI GCNNNNNNNGC 9 cut(s) 340, 433, 436, 508, 511, 517, 758, 767, 937
BstNI CCWGG 3 cut(s) 937, 1043, 1212
BstSCI CCNGG 4 cut(s) 935, 942, 1041, 1210
BstSFI CTRYAG 2 cut(s) 386, 864
BstSLI GKGCMC 1 cut(s) 740
BstV2I GAAGAC 3 cut(s) 698, 1053, 1341
BstXI CCANNNNNNTGG 1 cut(s) 1203
BsuRI GGCC 4 cut(s) 5, 622, 1076, 1298
BtgI CCRYGG 1 cut(s) 765
BtgZI GCGATG 2 cut(s) 459, 644
BtsCI GGATG 6 cut(s) 51, 576, 932, 1036, 1188, 1234
BtsIMutI CAGTG 1 cut(s) 1056
Cac8I GCNNGC 3 cut(s) 624, 1084, 1088
CciI TCATGA 1 cut(s) 1276
CfoI GCGC 1 cut(s) 1027
Cfr10I RCCGGY 1 cut(s) 121
Cfr13I GGNCC 2 cut(s) 327, 1208
Csp6I GTAC 1 cut(s) 642
CviAII CATG 6 cut(s) 766, 1109, 1246, 1277, 1316, 1369
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 4 cut(s) 336, 810, 825, 1095
DpnI GATC 3 cut(s) 167, 1127, 1392
DpnII GATC 3 cut(s) 165, 1125, 1390
DriI GACNNNNNGTC 1 cut(s) 381
EaeI YGGCCR 3 cut(s) 3, 1074, 1296
Eam1105I GACNNNNNGTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 765
Eco24I GRGCYC 1 cut(s) 176
Eco32I GATATC 2 cut(s) 465, 495
Eco47I GGWCC 2 cut(s) 327, 1208
Eco57I CTGAAG 2 cut(s) 512, 774
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoO109I RGGNCCY 2 cut(s) 327, 1208
EcoRII CCWGG 3 cut(s) 935, 1041, 1210
EcoRV GATATC 2 cut(s) 465, 495
EcoT14I CCWWGG 1 cut(s) 765
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 765
FaeI CATG 6 cut(s) 769, 1112, 1249, 1280, 1319, 1372
FaqI GGGAC 1 cut(s) 313
FatI CATG 6 cut(s) 765, 1108, 1245, 1276, 1315, 1368
FauI CCCGC 1 cut(s) 411
FokI GGATG 6 cut(s) 58, 583, 919, 1023, 1195, 1241
FriOI GRGCYC 1 cut(s) 176
FspBI CTAG 1 cut(s) 645
GlaI GCGC 1 cut(s) 1026
GsaI CCCAGC 1 cut(s) 737
HaeII RGCGCY 1 cut(s) 1028
HaeIII GGCC 4 cut(s) 5, 622, 1076, 1298
HapII CCGG 2 cut(s) 122, 943
HhaI GCGC 1 cut(s) 1027
Hin1II CATG 6 cut(s) 769, 1112, 1249, 1280, 1319, 1372
Hin6I GCGC 1 cut(s) 1025
HinP1I GCGC 1 cut(s) 1025
HindIII AAGCTT 3 cut(s) 135, 650, 812
HinfI GANTC 5 cut(s) 26, 556, 721, 913, 1309
HpaII CCGG 2 cut(s) 122, 943
HphI GGTGA 3 cut(s) 35, 1073, 1277
Hpy188I TCNGA 6 cut(s) 45, 259, 997, 1096, 1135, 1308
Hpy188III TCNNGA 5 cut(s) 169, 297, 373, 1277, 1394
HpyAV CCTTC 4 cut(s) 561, 751, 1109, 1387
HpyCH4III ACNGT 1 cut(s) 779
HpyCH4IV ACGT 2 cut(s) 88, 181
HpyCH4V TGCA 6 cut(s) 388, 866, 1013, 1190, 1270, 1372
HpyF10VI GCNNNNNNNGC 9 cut(s) 340, 433, 436, 508, 511, 517, 758, 767, 937
HpyF3I CTNAG 4 cut(s) 336, 810, 825, 1095
HpySE526I ACGT 2 cut(s) 88, 181
Hsp92II CATG 6 cut(s) 769, 1112, 1249, 1280, 1319, 1372
HspAI GCGC 1 cut(s) 1025
KflI GGGWCCC 1 cut(s) 327
Kzo9I GATC 3 cut(s) 165, 1125, 1390
LmnI GCTCC 2 cut(s) 596, 886
LweI GCATC 5 cut(s) 482, 532, 621, 748, 1126
MaeI CTAG 1 cut(s) 645
MaeII ACGT 2 cut(s) 88, 181
MaeIII GTNAC 2 cut(s) 65, 144
MalI GATC 3 cut(s) 167, 1127, 1392
MboI GATC 3 cut(s) 165, 1125, 1390
MboII GAAGA 8 cut(s) 175, 228, 285, 698, 767, 1058, 1346, 1350
MfeI CAATTG 1 cut(s) 1008
MhlI GDGCHC 2 cut(s) 176, 740
MlsI TGGCCA 2 cut(s) 5, 1076
MluNI TGGCCA 2 cut(s) 5, 1076
MlyI GAGTC 3 cut(s) 565, 715, 907
MmeI TCCRAC 2 cut(s) 1221, 1278
Mox20I TGGCCA 2 cut(s) 5, 1076
MscI TGGCCA 2 cut(s) 5, 1076
MseI TTAA 2 cut(s) 159, 816
Msp20I TGGCCA 2 cut(s) 5, 1076
MspA1I CMGCKG 3 cut(s) 626, 752, 869
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 2 cut(s) 122, 943
MspR9I CCNGG 4 cut(s) 937, 944, 1043, 1212
MunI CAATTG 1 cut(s) 1008
Mva1269I GAATGC 2 cut(s) 811, 1192
MvaI CCWGG 3 cut(s) 937, 1043, 1212
MwoI GCNNNNNNNGC 9 cut(s) 340, 433, 436, 508, 511, 517, 758, 767, 937
NciI CCSGG 1 cut(s) 944
NcoI CCATGG 1 cut(s) 765
NdeII GATC 3 cut(s) 165, 1125, 1390
NlaIII CATG 6 cut(s) 769, 1112, 1249, 1280, 1319, 1372
NlaIV GGNNCC 6 cut(s) 328, 329, 739, 941, 987, 1209
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 2 cut(s) 65, 144
PagI TCATGA 1 cut(s) 1276
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 2 cut(s) 811, 1192
PfeI GAWTC 2 cut(s) 26, 1309
PleI GAGTC 3 cut(s) 564, 715, 907
PpsI GAGTC 3 cut(s) 564, 715, 907
PpuMI RGGWCCY 2 cut(s) 327, 1208
Psp5II RGGWCCY 2 cut(s) 327, 1208
Psp6I CCWGG 3 cut(s) 935, 1041, 1210
PspFI CCCAGC 1 cut(s) 733
PspGI CCWGG 3 cut(s) 935, 1041, 1210
PspN4I GGNNCC 6 cut(s) 328, 329, 739, 941, 987, 1209
PspPI GGNCC 2 cut(s) 327, 1208
PspPPI RGGWCCY 2 cut(s) 327, 1208
PstI CTGCAG 2 cut(s) 390, 868
PvuII CAGCTG 1 cut(s) 869
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
SaqAI TTAA 2 cut(s) 159, 816
Sau3AI GATC 3 cut(s) 165, 1125, 1390
Sau96I GGNCC 2 cut(s) 327, 1208
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 3 cut(s) 565, 715, 907
ScrFI CCNGG 4 cut(s) 937, 944, 1043, 1212
SduI GDGCHC 2 cut(s) 176, 740
SfaNI GCATC 5 cut(s) 482, 532, 621, 748, 1126
SfcI CTRYAG 2 cut(s) 386, 864
SinI GGWCC 2 cut(s) 327, 1208
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SpeI ACTAGT 1 cut(s) 644
SsiI CCGC 6 cut(s) 404, 502, 626, 750, 953, 1325
SspMI CTAG 1 cut(s) 645
StyD4I CCNGG 4 cut(s) 935, 942, 1041, 1210
StyI CCWWGG 1 cut(s) 765
TaaI ACNGT 1 cut(s) 779
TaiI ACGT 2 cut(s) 91, 184
TaqI TCGA 2 cut(s) 712, 744
TatI WGTACW 1 cut(s) 641
TauI GCSGC 3 cut(s) 505, 629, 955
TfiI GAWTC 2 cut(s) 26, 1309
Tru1I TTAA 2 cut(s) 159, 816
Tru9I TTAA 2 cut(s) 159, 816
TscAI CASTG 1 cut(s) 1063
TseFI GTSAC 2 cut(s) 65, 144
Tsp45I GTSAC 2 cut(s) 65, 144
TspDTI ATGAA 9 cut(s) 51, 147, 215, 243, 596, 1199, 1332, 1344, 1350
TspRI CASTG 1 cut(s) 1063
Vha464I CTTAAG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 327, 1208
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 3 cut(s) 221, 550, 699
XspI CTAG 1 cut(s) 645
ZrmI AGTACT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.