Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

48039719 .. 48042508

Gene Structure 2790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG347300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGACCACAGCAAAAGGGAGTGGTGAATCAAACATTGAAACTCGGATGGAAACAAGCCGAGATTGTGACCTTGACAAGGGCAAGGAACGTGATTTTTTCTTGGAGAGTTGTCAATGGAAGCCGGTTTTTGATGAAGCTTCAATGTCACATAGACCTCTTAAGAAGATCAAGAGCCCTGAACGTAGTCATCAGCACCAATCCTCCTCTGCTTTTCCCCCTGAATTTCATACCCCATCTTCTCCTCCTCGTAGTTCATCAGATACATCATCAATCACTTCTTGTTGTCCTTCTTCTTCCAGAATAGTCTTTCCTTTTGCTTTTGATGGGTCCCTGCCTCAGCAGCAGCAACCTATACAATTTCCCCACCAATTCCAGACCACAGGTCTGCAGCCTATACAATTCCCGCCAAGTACAAATGTTGTAGAGCAGCAGCAGCAACAACAAAATCAGCAGCAGATGATATCTTTCGCCTCTCACCAGCAACAAATGATATCTTGGCGGCAGCAGCAGCAGCAGCAGCAACAGCAAATGCTTCAGTATTGGAGTGATGCTTTGAATTTGAGTCCAAGAGGAAGGATGATGATGATGAACAGGTTTGGAGGAGCTAATAGTAGTGGTGGTATTAGGCCAGCGGCGATGCCTGTAAGTACTAGTAAGCTTTACAGGGGAGTAAGGCAAAGGCATTGGGGCAAATGGGTAGCTGAAATTCGTCTTCCTCGAAACAGGACTCGCCTCTGGCTGGGCACCTTCGACACCGCTGAAGATGCTGCCATGGCTTATGACCGTGAGGCTTTCAAGTTGAGAGGAGAGAATGCTAAGCTTAATTTCCCTGAGCTTTTCCTCAACAAAGACAAAGATAATAATAATGCTGCAGCTGTTTCCACAGCTCCAAGTTCAACCGAAACTGCTTCTGTGCCGACTCAACTAGTTTCAAAGCCATCCAGGCACCAGGGTAAGCCGCTACTGAAAGACCTTGATTTACAATTACAGGTTCCAATTTCAGATAGGGAAACAATTGCGCCTCCACCAGCGCCATATTCACATCCCCAGGAAGACGATGACACTGGTGAAAGTGATTTGGCCAATGCCAGCCAGCAATCTGAGGTTGAAAATCATGGCGAAGGAGGAGGGATCATTTCAGATGCCCCAACACAGGAAATGGCTTGGGGAGAAATGGCAGAGGCTTGGATGAATGCAATTCCACAAGGTTGGGGTCCTGGTAGTCCTGTCTGGGATGATTTAGAGTTGGACATGACTTCCAACAATCTTGTGCTGCAATCTCATGATTATCACCATTTTACGGCCAATAATCCGAATCGGCATGAACTTCCGCAGCAGGAAGACAACTCTTGTTCTGCTTCATCTTCATATCCCATGCAGCCCTTCTTTTGGAAAGATCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

468

Amino Acids

52.7

Weight (kDa)

5.48

Isoelectric Point (pI)

63.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	220 - 269	1.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	743, 945
AciI	CCGC	6 cut(s)	404, 499, 632, 756, 959, 1331
AclWI	GGATC	1 cut(s)	1139
AcoI	YGGCCR	2 cut(s)	1080, 1302
AcsI	RAATTY	3 cut(s)	221, 556, 705
AcuI	CTGAAG	2 cut(s)	518, 780
AfaI	GTAC	2 cut(s)	412, 649
AfiI	CCNNNNNNNGG	5 cut(s)	76, 739, 1153, 1300, 1389
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	7 cut(s)	38, 141, 556, 796, 897, 933, 1109
AhdI	GACNNNNNGTC	1 cut(s)	381
AhlI	ACTAGT	2 cut(s)	650, 925
AjnI	CCWGG	4 cut(s)	941, 948, 1047, 1216
AluBI	AGCT	8 cut(s)	137, 605, 658, 701, 820, 835, 875, 887
AluI	AGCT	8 cut(s)	137, 605, 658, 701, 820, 835, 875, 887
AlwI	GGATC	1 cut(s)	1139
AoxI	GGCC	3 cut(s)	626, 1080, 1302
ApoI	RAATTY	3 cut(s)	221, 556, 705
AspLEI	GCGC	2 cut(s)	1021, 1033
AspS9I	GGNCC	2 cut(s)	327, 1214
AsuHPI	GGTGA	4 cut(s)	35, 467, 1079, 1283
AvaII	GGWCC	2 cut(s)	327, 1214
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	1082
BanI	GGYRCC	2 cut(s)	743, 945
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	3 cut(s)	704, 1059, 1347
BbvCI	CCTCAGC	1 cut(s)	336
BccI	CCATC	4 cut(s)	40, 241, 317, 946
BceAI	ACGGC	1 cut(s)	1317
BciT130I	CCWGG	4 cut(s)	943, 950, 1049, 1218
BcuI	ACTAGT	2 cut(s)	650, 925
BfaI	CTAG	2 cut(s)	651, 926
BfmI	CTRYAG	2 cut(s)	386, 870
BfoI	RGCGCY	1 cut(s)	1034
BfrI	CTTAAG	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	943
BlpI	GCTNAGC	1 cut(s)	816
BmcAI	AGTACT	1 cut(s)	649
Bme1390I	CCNGG	4 cut(s)	943, 950, 1049, 1218
Bme18I	GGWCC	2 cut(s)	327, 1214
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	327, 1214
BmiI	GGNNCC	6 cut(s)	328, 329, 745, 947, 993, 1215
BmrFI	CCNGG	4 cut(s)	943, 950, 1049, 1218
BmsI	GCATC	4 cut(s)	538, 627, 754, 1132
BpiI	GAAGAC	3 cut(s)	704, 1059, 1347
Bpu10I	CCTNAGC	2 cut(s)	336, 831
Bpu1102I	GCTNAGC	1 cut(s)	816
BsaJI	CCNNGG	3 cut(s)	771, 949, 1047
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 739, 1153, 1300, 1389
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	1069
BseBI	CCWGG	4 cut(s)	943, 950, 1049, 1218
BseDI	CCNNGG	3 cut(s)	771, 949, 1047
BseGI	GGATG	6 cut(s)	51, 582, 938, 1042, 1194, 1240
BseLI	CCNNNNNNNGG	5 cut(s)	76, 739, 1153, 1300, 1389
BseMII	CTCAG	3 cut(s)	350, 822, 1092
BseNI	ACTGG	1 cut(s)	1069
BseRI	GAGGAG	6 cut(s)	193, 231, 234, 615, 819, 1140
BseSI	GKGCMC	1 cut(s)	746
BseYI	CCCAGC	1 cut(s)	739
BshFI	GGCC	3 cut(s)	628, 1082, 1304
BshNI	GGYRCC	2 cut(s)	743, 945
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	5 cut(s)	76, 739, 1153, 1300, 1389
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	2 cut(s)	817, 1198
BsnI	GGCC	3 cut(s)	628, 1082, 1304
Bsp1286I	GDGCHC	2 cut(s)	176, 746
Bsp143I	GATC	3 cut(s)	165, 1131, 1396
Bsp1720I	GCTNAGC	1 cut(s)	816
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	6 cut(s)	404, 499, 632, 756, 959, 1331
BspANI	GGCC	3 cut(s)	628, 1082, 1304
BspCNI	CTCAG	3 cut(s)	349, 823, 1093
BspHI	TCATGA	1 cut(s)	1282
BspLI	GGNNCC	6 cut(s)	328, 329, 745, 947, 993, 1215
BspMAI	CTGCAG	2 cut(s)	390, 874
BspPI	GGATC	1 cut(s)	1139
BspT107I	GGYRCC	2 cut(s)	743, 945
BspTI	CTTAAG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	1069
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	771, 949, 1047
BssMI	GATC	3 cut(s)	165, 1131, 1396
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	4 cut(s)	943, 950, 1049, 1218
Bst4CI	ACNGT	1 cut(s)	785
BstAFI	CTTAAG	1 cut(s)	158
BstC8I	GCNNGC	3 cut(s)	630, 1090, 1094
BstDEI	CTNAG	4 cut(s)	336, 816, 831, 1101
BstDSI	CCRYGG	1 cut(s)	771
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	6 cut(s)	51, 582, 938, 1042, 1194, 1240
BstH2I	RGCGCY	1 cut(s)	1034
BstHHI	GCGC	2 cut(s)	1021, 1033
BstKTI	GATC	3 cut(s)	168, 1134, 1399
BstMBI	GATC	3 cut(s)	165, 1131, 1396
BstNI	CCWGG	4 cut(s)	943, 950, 1049, 1218
BstSCI	CCNGG	4 cut(s)	941, 948, 1047, 1216
BstSFI	CTRYAG	2 cut(s)	386, 870
BstSLI	GKGCMC	1 cut(s)	746
BstV2I	GAAGAC	3 cut(s)	704, 1059, 1347
BstXI	CCANNNNNNTGG	1 cut(s)	1209
BsuRI	GGCC	3 cut(s)	628, 1082, 1304
BtgI	CCRYGG	1 cut(s)	771
BtgZI	GCGATG	1 cut(s)	650
BtsCI	GGATG	6 cut(s)	51, 582, 938, 1042, 1194, 1240
BtsIMutI	CAGTG	1 cut(s)	1062
Cac8I	GCNNGC	3 cut(s)	630, 1090, 1094
CciI	TCATGA	1 cut(s)	1282
CfoI	GCGC	2 cut(s)	1021, 1033
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	327, 1214
Csp6I	GTAC	2 cut(s)	411, 648
CviAII	CATG	6 cut(s)	772, 1115, 1252, 1283, 1322, 1375
CviQI	GTAC	2 cut(s)	411, 648
DdeI	CTNAG	4 cut(s)	336, 816, 831, 1101
DpnI	GATC	3 cut(s)	167, 1133, 1398
DpnII	GATC	3 cut(s)	165, 1131, 1396
DriI	GACNNNNNGTC	1 cut(s)	381
EaeI	YGGCCR	2 cut(s)	1080, 1302
Eam1105I	GACNNNNNGTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	176
Eco32I	GATATC	2 cut(s)	462, 492
Eco47I	GGWCC	2 cut(s)	327, 1214
Eco57I	CTGAAG	2 cut(s)	518, 780
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	327, 1214
EcoRII	CCWGG	4 cut(s)	941, 948, 1047, 1216
EcoRV	GATATC	2 cut(s)	462, 492
EcoT14I	CCWWGG	1 cut(s)	771
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	771
FaeI	CATG	6 cut(s)	775, 1118, 1255, 1286, 1325, 1378
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	6 cut(s)	771, 1114, 1251, 1282, 1321, 1374
FauI	CCCGC	1 cut(s)	411
FokI	GGATG	6 cut(s)	58, 589, 925, 1029, 1201, 1247
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	2 cut(s)	651, 926
GlaI	GCGC	2 cut(s)	1020, 1032
GsaI	CCCAGC	1 cut(s)	743
HaeII	RGCGCY	1 cut(s)	1034
HaeIII	GGCC	3 cut(s)	628, 1082, 1304
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	2 cut(s)	1021, 1033
Hin1II	CATG	6 cut(s)	775, 1118, 1255, 1286, 1325, 1378
Hin6I	GCGC	2 cut(s)	1019, 1031
HinP1I	GCGC	2 cut(s)	1019, 1031
HindIII	AAGCTT	3 cut(s)	135, 656, 818
HinfI	GANTC	5 cut(s)	26, 562, 727, 919, 1315
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	4 cut(s)	35, 467, 1079, 1283
Hpy188I	TCNGA	6 cut(s)	45, 259, 1003, 1102, 1141, 1314
Hpy188III	TCNNGA	5 cut(s)	169, 297, 373, 1283, 1400
HpyAV	CCTTC	5 cut(s)	297, 567, 757, 1115, 1393
HpyCH4III	ACNGT	1 cut(s)	785
HpyCH4IV	ACGT	2 cut(s)	88, 181
HpyCH4V	TGCA	5 cut(s)	388, 872, 1196, 1276, 1378
HpyF3I	CTNAG	4 cut(s)	336, 816, 831, 1101
HpySE526I	ACGT	2 cut(s)	88, 181
Hsp92II	CATG	6 cut(s)	775, 1118, 1255, 1286, 1325, 1378
HspAI	GCGC	2 cut(s)	1019, 1031
KflI	GGGWCCC	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	165, 1131, 1396
LmnI	GCTCC	2 cut(s)	602, 892
LweI	GCATC	4 cut(s)	538, 627, 754, 1132
MaeI	CTAG	2 cut(s)	651, 926
MaeII	ACGT	2 cut(s)	88, 181
MaeIII	GTNAC	2 cut(s)	65, 144
MalI	GATC	3 cut(s)	167, 1133, 1398
MboI	GATC	3 cut(s)	165, 1131, 1396
MboII	GAAGA	9 cut(s)	175, 228, 282, 285, 704, 773, 1064, 1352, 1356
MfeI	CAATTG	1 cut(s)	1014
MhlI	GDGCHC	2 cut(s)	176, 746
MlsI	TGGCCA	1 cut(s)	1082
MluNI	TGGCCA	1 cut(s)	1082
MlyI	GAGTC	3 cut(s)	571, 721, 913
MmeI	TCCRAC	2 cut(s)	1227, 1284
Mox20I	TGGCCA	1 cut(s)	1082
MscI	TGGCCA	1 cut(s)	1082
MseI	TTAA	2 cut(s)	159, 822
Msp20I	TGGCCA	1 cut(s)	1082
MspA1I	CMGCKG	3 cut(s)	632, 758, 875
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	4 cut(s)	943, 950, 1049, 1218
MunI	CAATTG	1 cut(s)	1014
Mva1269I	GAATGC	2 cut(s)	817, 1198
MvaI	CCWGG	4 cut(s)	943, 950, 1049, 1218
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	3 cut(s)	165, 1131, 1396
NlaIII	CATG	6 cut(s)	775, 1118, 1255, 1286, 1325, 1378
NlaIV	GGNNCC	6 cut(s)	328, 329, 745, 947, 993, 1215
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	65, 144
PagI	TCATGA	1 cut(s)	1282
PcsI	WCGNNNNNNNCGW	1 cut(s)	715
PctI	GAATGC	2 cut(s)	817, 1198
PfeI	GAWTC	2 cut(s)	26, 1315
PleI	GAGTC	3 cut(s)	570, 721, 913
PpsI	GAGTC	3 cut(s)	570, 721, 913
PpuMI	RGGWCCY	2 cut(s)	327, 1214
Psp5II	RGGWCCY	2 cut(s)	327, 1214
Psp6I	CCWGG	4 cut(s)	941, 948, 1047, 1216
PspFI	CCCAGC	1 cut(s)	739
PspGI	CCWGG	4 cut(s)	941, 948, 1047, 1216
PspN4I	GGNNCC	6 cut(s)	328, 329, 745, 947, 993, 1215
PspPI	GGNCC	2 cut(s)	327, 1214
PspPPI	RGGWCCY	2 cut(s)	327, 1214
PstI	CTGCAG	2 cut(s)	390, 874
PvuII	CAGCTG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	412, 649
RsaNI	GTAC	2 cut(s)	411, 648
SaqAI	TTAA	2 cut(s)	159, 822
Sau3AI	GATC	3 cut(s)	165, 1131, 1396
Sau96I	GGNCC	2 cut(s)	327, 1214
ScaI	AGTACT	1 cut(s)	649
SchI	GAGTC	3 cut(s)	571, 721, 913
ScrFI	CCNGG	4 cut(s)	943, 950, 1049, 1218
SduI	GDGCHC	2 cut(s)	176, 746
SfaNI	GCATC	4 cut(s)	538, 627, 754, 1132
SfcI	CTRYAG	2 cut(s)	386, 870
SinI	GGWCC	2 cut(s)	327, 1214
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	2 cut(s)	650, 925
SsiI	CCGC	6 cut(s)	404, 499, 632, 756, 959, 1331
SspMI	CTAG	2 cut(s)	651, 926
StyD4I	CCNGG	4 cut(s)	941, 948, 1047, 1216
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	1 cut(s)	785
TaiI	ACGT	2 cut(s)	91, 184
TaqI	TCGA	2 cut(s)	718, 750
TatI	WGTACW	2 cut(s)	410, 647
TauI	GCSGC	3 cut(s)	502, 635, 961
TfiI	GAWTC	2 cut(s)	26, 1315
Tru1I	TTAA	2 cut(s)	159, 822
Tru9I	TTAA	2 cut(s)	159, 822
TscAI	CASTG	1 cut(s)	1069
TseFI	GTSAC	2 cut(s)	65, 144
Tsp45I	GTSAC	2 cut(s)	65, 144
TspDTI	ATGAA	8 cut(s)	147, 215, 243, 602, 1205, 1338, 1350, 1356
TspRI	CASTG	1 cut(s)	1069
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	327, 1214
XagI	CCTNNNNNAGG	1 cut(s)	74
XapI	RAATTY	3 cut(s)	221, 556, 705
XspI	CTAG	2 cut(s)	651, 926
ZrmI	AGTACT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.