Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

39413285 .. 39415759

Gene Structure 2475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGCCACAGCAAAAGGGAGTGGTGAATCAAACAATGAAACTTGGATGGAAACAAGCCGAGATTGTGACCTTGACAAGGGCAAGGAACGTGATTTTTTCTTGGAGAGTTGTCAATGGAAGCCGGTTTTTGATGAAGCTTCAATGTCACATAGACCTCTTAAGAAGATCAAGAGCCCTGAACGTAGTCATCAGCACCAATCCTCCTCTGCTTTTCCCCCTGAATTTCATATCCCATCTTCTCCTCCTCGTACTTCATCAGATACATCATCAATCACTTCTTGTTGTCCTTCTTCTTCCAGAATAGTCTTTCCTTTTGCTTTTGATGGGTCCCTGCCTCAGCAGCAGCAACCTATACAATTTCCCCACCAATTCCAGACCACAGGTCTGCAGCCTATACAATTCCCGCCAAGTACAAATGTTGTAGAGCAGCAGCAGCAACAACAACAAAATCAGCAGCAGATGATATCTTTCGCCTCGCACCAGCAACAAATGATATCTTGGCGGCAGCAGCAGCAGCAGCAGCAACAGCAAATGCTTCAGTATTGGAGTGATGCTTTGAATTTGAGTCCAAGAGGAAGGATGATGATGATGAACAGGTTTGGAGGTGCTAATAGTGGTGGTGGTATTAGGCCAGCGGCGATGCCTATAAGTACTAGTAAGCTTTACAGGGGAGTAAGGCAAAGGCATTGGGGCAAATGGGTAGCTGAAATTCGTCTTCCTCGAAACAGGACTCGCCTCTGGCTGGGCACCTTCGACACCGCTGAAGATGCTGCCATGGCTTATGACCGTGAGGCTTTCAAGTTGAGAGGAGAGAATGCTAAGCTTAATTTCCCTGAGCTTTTCCTCAACAAAGACAAAGATAATAATAATGCTGAAGCTGTTTCCACAGCTCCAAGTTCAACCGAAACTGCTTCTGTGCCGACTCAACAAGTTTCAAAGCCATCCAGGCACCAGGGTAAGCCGCTACTGAAAGACCTTGATTTACAATTACAGGTTCCAATTTCAGATAGGGAAACAATTGCACCTCCACCAGCGCCATATTCACATCCCCAGGAAGACGATGACACTGGTGAAAGTGATTTGGCCAATGCCAGCCAGCAATCTGAGGTTGAAAATCATGGAGAAGGAGGAGGGATCATTTCAGATGCCCCAACACAGGAAATGGCTTGGGGAGAAATGGCAGAGGCTTGGATGAATGCAATTCCACAAGGTTGGGGTCCTGGTAGTCCTGTCTGGGATGATTTAGAGTTGGACATGACTTCGAACAATCTTGTGCTGCAATCTCATGATTATCACCATTTTACGGCCAATAATCCGAATCGGCATGAACTTCCGCAGCAGGAAGACAACTCTTGTTCTGCTTCATCTTCATATCCCATGCAGCCCTTCTTTTGGAAAGATCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

469

Amino Acids

52.92

Weight (kDa)

5.34

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	221 - 270	1.9e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	746, 948
AciI	CCGC	6 cut(s)	404, 502, 635, 759, 962, 1334
AclWI	GGATC	1 cut(s)	1142
AcoI	YGGCCR	3 cut(s)	3, 1083, 1305
AcsI	RAATTY	3 cut(s)	221, 559, 708
AcuI	CTGAAG	3 cut(s)	521, 783, 894
AfaI	GTAC	3 cut(s)	250, 412, 652
AfiI	CCNNNNNNNGG	5 cut(s)	76, 742, 1156, 1303, 1392
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	6 cut(s)	141, 559, 799, 900, 936, 1112
AhdI	GACNNNNNGTC	1 cut(s)	381
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	4 cut(s)	944, 951, 1050, 1219
AluBI	AGCT	7 cut(s)	137, 661, 704, 823, 838, 878, 890
AluI	AGCT	7 cut(s)	137, 661, 704, 823, 838, 878, 890
AlwI	GGATC	1 cut(s)	1142
AoxI	GGCC	4 cut(s)	3, 629, 1083, 1305
ApoI	RAATTY	3 cut(s)	221, 559, 708
AspLEI	GCGC	1 cut(s)	1036
AspS9I	GGNCC	2 cut(s)	327, 1217
AsuHPI	GGTGA	3 cut(s)	35, 1082, 1286
AsuII	TTCGAA	1 cut(s)	1262
AvaII	GGWCC	2 cut(s)	327, 1217
BaeGI	GKGCMC	1 cut(s)	749
BalI	TGGCCA	2 cut(s)	5, 1085
BanI	GGYRCC	2 cut(s)	746, 948
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	3 cut(s)	707, 1062, 1350
BbvCI	CCTCAGC	1 cut(s)	336
BccI	CCATC	4 cut(s)	40, 241, 317, 949
BceAI	ACGGC	1 cut(s)	1320
BciT130I	CCWGG	4 cut(s)	946, 953, 1052, 1221
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	1037
BfrI	CTTAAG	1 cut(s)	158
BglI	GCCNNNNNGGC	1 cut(s)	946
BlpI	GCTNAGC	1 cut(s)	819
BmcAI	AGTACT	1 cut(s)	652
Bme1390I	CCNGG	4 cut(s)	946, 953, 1052, 1221
Bme18I	GGWCC	2 cut(s)	327, 1217
BmeRI	GACNNNNNGTC	1 cut(s)	381
BmgT120I	GGNCC	2 cut(s)	327, 1217
BmiI	GGNNCC	6 cut(s)	328, 329, 748, 950, 996, 1218
BmrFI	CCNGG	4 cut(s)	946, 953, 1052, 1221
BmsI	GCATC	4 cut(s)	541, 630, 757, 1135
BpiI	GAAGAC	3 cut(s)	707, 1062, 1350
Bpu10I	CCTNAGC	2 cut(s)	336, 834
Bpu1102I	GCTNAGC	1 cut(s)	819
Bpu14I	TTCGAA	1 cut(s)	1262
BsaJI	CCNNGG	3 cut(s)	774, 952, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bsc4I	CCNNNNNNNGG	5 cut(s)	76, 742, 1156, 1303, 1392
Bse118I	RCCGGY	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	1072
BseBI	CCWGG	4 cut(s)	946, 953, 1052, 1221
BseDI	CCNNGG	3 cut(s)	774, 952, 1050
BseGI	GGATG	6 cut(s)	51, 585, 941, 1045, 1197, 1243
BseLI	CCNNNNNNNGG	5 cut(s)	76, 742, 1156, 1303, 1392
BseMII	CTCAG	3 cut(s)	350, 825, 1095
BseNI	ACTGG	1 cut(s)	1072
BseRI	GAGGAG	5 cut(s)	193, 231, 234, 822, 1143
BseSI	GKGCMC	1 cut(s)	749
BseYI	CCCAGC	1 cut(s)	742
BshFI	GGCC	4 cut(s)	5, 631, 1085, 1307
BshNI	GGYRCC	2 cut(s)	746, 948
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	5 cut(s)	76, 742, 1156, 1303, 1392
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	2 cut(s)	820, 1201
BsnI	GGCC	4 cut(s)	5, 631, 1085, 1307
Bsp119I	TTCGAA	1 cut(s)	1262
Bsp1286I	GDGCHC	2 cut(s)	176, 749
Bsp143I	GATC	3 cut(s)	165, 1134, 1399
Bsp1720I	GCTNAGC	1 cut(s)	819
Bsp19I	CCATGG	1 cut(s)	774
BspACI	CCGC	6 cut(s)	404, 502, 635, 759, 962, 1334
BspANI	GGCC	4 cut(s)	5, 631, 1085, 1307
BspCNI	CTCAG	3 cut(s)	349, 826, 1096
BspHI	TCATGA	1 cut(s)	1285
BspLI	GGNNCC	6 cut(s)	328, 329, 748, 950, 996, 1218
BspMAI	CTGCAG	1 cut(s)	390
BspPI	GGATC	1 cut(s)	1142
BspT104I	TTCGAA	1 cut(s)	1262
BspT107I	GGYRCC	2 cut(s)	746, 948
BspTI	CTTAAG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	1072
BssAI	RCCGGY	1 cut(s)	121
BssECI	CCNNGG	3 cut(s)	774, 952, 1050
BssMI	GATC	3 cut(s)	165, 1134, 1399
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	4 cut(s)	946, 953, 1052, 1221
Bst4CI	ACNGT	1 cut(s)	788
BstAFI	CTTAAG	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	1262
BstC8I	GCNNGC	3 cut(s)	633, 1093, 1097
BstDEI	CTNAG	4 cut(s)	336, 819, 834, 1104
BstDSI	CCRYGG	1 cut(s)	774
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	6 cut(s)	51, 585, 941, 1045, 1197, 1243
BstH2I	RGCGCY	1 cut(s)	1037
BstHHI	GCGC	1 cut(s)	1036
BstKTI	GATC	3 cut(s)	168, 1137, 1402
BstMBI	GATC	3 cut(s)	165, 1134, 1399
BstNI	CCWGG	4 cut(s)	946, 953, 1052, 1221
BstSCI	CCNGG	4 cut(s)	944, 951, 1050, 1219
BstSFI	CTRYAG	1 cut(s)	386
BstSLI	GKGCMC	1 cut(s)	749
BstV2I	GAAGAC	3 cut(s)	707, 1062, 1350
BstXI	CCANNNNNNTGG	1 cut(s)	1212
BsuRI	GGCC	4 cut(s)	5, 631, 1085, 1307
BtgI	CCRYGG	1 cut(s)	774
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	6 cut(s)	51, 585, 941, 1045, 1197, 1243
BtsIMutI	CAGTG	1 cut(s)	1065
Cac8I	GCNNGC	3 cut(s)	633, 1093, 1097
CciI	TCATGA	1 cut(s)	1285
CfoI	GCGC	1 cut(s)	1036
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	327, 1217
Csp6I	GTAC	3 cut(s)	249, 411, 651
CviAII	CATG	6 cut(s)	775, 1118, 1255, 1286, 1325, 1378
CviQI	GTAC	3 cut(s)	249, 411, 651
DdeI	CTNAG	4 cut(s)	336, 819, 834, 1104
DpnI	GATC	3 cut(s)	167, 1136, 1401
DpnII	GATC	3 cut(s)	165, 1134, 1399
DriI	GACNNNNNGTC	1 cut(s)	381
EaeI	YGGCCR	3 cut(s)	3, 1083, 1305
Eam1105I	GACNNNNNGTC	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	176
Eco32I	GATATC	2 cut(s)	465, 495
Eco47I	GGWCC	2 cut(s)	327, 1217
Eco57I	CTGAAG	3 cut(s)	521, 783, 894
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	327, 1217
EcoRII	CCWGG	4 cut(s)	944, 951, 1050, 1219
EcoRV	GATATC	2 cut(s)	465, 495
EcoT14I	CCWWGG	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	774
FaeI	CATG	6 cut(s)	778, 1121, 1258, 1289, 1328, 1381
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	6 cut(s)	774, 1117, 1254, 1285, 1324, 1377
FauI	CCCGC	1 cut(s)	411
FokI	GGATG	6 cut(s)	58, 592, 928, 1032, 1204, 1250
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	1 cut(s)	1035
GsaI	CCCAGC	1 cut(s)	746
HaeII	RGCGCY	1 cut(s)	1037
HaeIII	GGCC	4 cut(s)	5, 631, 1085, 1307
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	1036
Hin1II	CATG	6 cut(s)	778, 1121, 1258, 1289, 1328, 1381
Hin6I	GCGC	1 cut(s)	1034
HinP1I	GCGC	1 cut(s)	1034
HindIII	AAGCTT	3 cut(s)	135, 659, 821
HinfI	GANTC	5 cut(s)	26, 565, 730, 922, 1318
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	35, 1082, 1286
Hpy188I	TCNGA	5 cut(s)	259, 1006, 1105, 1144, 1317
Hpy188III	TCNNGA	5 cut(s)	169, 297, 373, 1286, 1403
HpyAV	CCTTC	5 cut(s)	297, 570, 760, 1118, 1396
HpyCH4III	ACNGT	1 cut(s)	788
HpyCH4IV	ACGT	2 cut(s)	88, 181
HpyCH4V	TGCA	5 cut(s)	388, 1022, 1199, 1279, 1381
HpyF3I	CTNAG	4 cut(s)	336, 819, 834, 1104
HpySE526I	ACGT	2 cut(s)	88, 181
Hsp92II	CATG	6 cut(s)	778, 1121, 1258, 1289, 1328, 1381
HspAI	GCGC	1 cut(s)	1034
KflI	GGGWCCC	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	165, 1134, 1399
LmnI	GCTCC	1 cut(s)	895
LweI	GCATC	4 cut(s)	541, 630, 757, 1135
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	2 cut(s)	88, 181
MaeIII	GTNAC	2 cut(s)	65, 144
MalI	GATC	3 cut(s)	167, 1136, 1401
MboI	GATC	3 cut(s)	165, 1134, 1399
MboII	GAAGA	9 cut(s)	175, 228, 282, 285, 707, 776, 1067, 1355, 1359
MfeI	CAATTG	1 cut(s)	1017
MhlI	GDGCHC	2 cut(s)	176, 749
MlsI	TGGCCA	2 cut(s)	5, 1085
MluNI	TGGCCA	2 cut(s)	5, 1085
MlyI	GAGTC	3 cut(s)	574, 724, 916
MmeI	TCCRAC	1 cut(s)	1230
Mox20I	TGGCCA	2 cut(s)	5, 1085
MscI	TGGCCA	2 cut(s)	5, 1085
MseI	TTAA	2 cut(s)	159, 825
Msp20I	TGGCCA	2 cut(s)	5, 1085
MspA1I	CMGCKG	2 cut(s)	635, 761
MspCI	CTTAAG	1 cut(s)	158
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	4 cut(s)	946, 953, 1052, 1221
MunI	CAATTG	1 cut(s)	1017
Mva1269I	GAATGC	2 cut(s)	820, 1201
MvaI	CCWGG	4 cut(s)	946, 953, 1052, 1221
NcoI	CCATGG	1 cut(s)	774
NdeII	GATC	3 cut(s)	165, 1134, 1399
NlaIII	CATG	6 cut(s)	778, 1121, 1258, 1289, 1328, 1381
NlaIV	GGNNCC	6 cut(s)	328, 329, 748, 950, 996, 1218
NmeAIII	GCCGAG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	65, 144
NspV	TTCGAA	1 cut(s)	1262
PagI	TCATGA	1 cut(s)	1285
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PctI	GAATGC	2 cut(s)	820, 1201
PfeI	GAWTC	2 cut(s)	26, 1318
PleI	GAGTC	3 cut(s)	573, 724, 916
PpsI	GAGTC	3 cut(s)	573, 724, 916
PpuMI	RGGWCCY	2 cut(s)	327, 1217
Psp5II	RGGWCCY	2 cut(s)	327, 1217
Psp6I	CCWGG	4 cut(s)	944, 951, 1050, 1219
PspFI	CCCAGC	1 cut(s)	742
PspGI	CCWGG	4 cut(s)	944, 951, 1050, 1219
PspN4I	GGNNCC	6 cut(s)	328, 329, 748, 950, 996, 1218
PspPI	GGNCC	2 cut(s)	327, 1217
PspPPI	RGGWCCY	2 cut(s)	327, 1217
PstI	CTGCAG	1 cut(s)	390
RsaI	GTAC	3 cut(s)	250, 412, 652
RsaNI	GTAC	3 cut(s)	249, 411, 651
SaqAI	TTAA	2 cut(s)	159, 825
Sau3AI	GATC	3 cut(s)	165, 1134, 1399
Sau96I	GGNCC	2 cut(s)	327, 1217
ScaI	AGTACT	1 cut(s)	652
SchI	GAGTC	3 cut(s)	574, 724, 916
ScrFI	CCNGG	4 cut(s)	946, 953, 1052, 1221
SduI	GDGCHC	2 cut(s)	176, 749
SfaNI	GCATC	4 cut(s)	541, 630, 757, 1135
SfcI	CTRYAG	1 cut(s)	386
SfuI	TTCGAA	1 cut(s)	1262
SinI	GGWCC	2 cut(s)	327, 1217
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	653
SsiI	CCGC	6 cut(s)	404, 502, 635, 759, 962, 1334
SspMI	CTAG	1 cut(s)	654
StyD4I	CCNGG	4 cut(s)	944, 951, 1050, 1219
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	1 cut(s)	788
TaiI	ACGT	2 cut(s)	91, 184
TaqI	TCGA	3 cut(s)	721, 753, 1262
TatI	WGTACW	2 cut(s)	410, 650
TauI	GCSGC	3 cut(s)	505, 638, 964
TfiI	GAWTC	2 cut(s)	26, 1318
Tru1I	TTAA	2 cut(s)	159, 825
Tru9I	TTAA	2 cut(s)	159, 825
TscAI	CASTG	1 cut(s)	1072
TseFI	GTSAC	2 cut(s)	65, 144
Tsp45I	GTSAC	2 cut(s)	65, 144
TspDTI	ATGAA	9 cut(s)	51, 147, 215, 243, 605, 1208, 1341, 1353, 1359
TspRI	CASTG	1 cut(s)	1072
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	327, 1217
XagI	CCTNNNNNAGG	1 cut(s)	74
XapI	RAATTY	3 cut(s)	221, 559, 708
XspI	CTAG	1 cut(s)	654
ZrmI	AGTACT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.