pycom09g16830

ethylene-responsive transcription factor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
17205337 .. 17206656
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16830.1

Sequence Viewer

Length: 1320 bp
ATGGAAACAAGCGGAGAATGGGAGGCGAACAAAGACAAGGAACTTGATTTTTCCTTCGAGAGGCCGCCATGGAAGCCCGGTTTTAGTGAGGCTTCAACGGCGTCGAATAGGCCTCTCAAGAAAGTCAAGAGCCCTGAAAGGCAAGACCCAATTCAAGCTTCACCTTCTTTAGCTCATCATCAAACACCTTCGCCAATCATCGCTCCCCATCCATCTTCTTCCTCTTCAAAAATAGTTTTTCCTTTTTCTTTCGACGGATCTCAACAGCCTATGATGCAATTCCCCCACCCGTTCAACCCCACAAATTTGCCTATGTTTCCCTCACCAATTCAACAGCAACAGCAACAAAATCCGCAGCAAATGATTTCTTTTGAATCCCACCAGCAGCAGCAGCAGGGGATGAGTTATCCATCGCCTTTTGTCGGAGAGTCGGTGAGTTGGCAGCAGCACCAGAAAATGCTTCAGCATTGGAGTGACGCTTTGAATTTGAGTCCAAGAGGGAGGGTGATGATGATGAACAGGTTGGGACCAGATGGCAGGCCAATGTTACGACCCCCGGCAATGCCTTATAATACTACAAAACTTTACAGGGGAGTGAGGCAACGGCATTGGGGCAAATGGGTAGCTGAAATCCGCCTTCCTCGAAACAGGACTCGCCTCTGGCTTGGCACCTTTGACACAGCTGAAGATGCCGCCATGGCTTACGACCGCGAGGCCTTCAAGTTGAGAGGAGAGAATGCCAGGCTCAATTTCCCTGAGCTTTTTCTCAATAAAGACAAATCAGATGTTTCAGTTTCATCAGCTCCAAGTTCAGCCACTATTTCGCCTCCAAGGCATGAAGGTTCAAAACCAACCAGGCACCGCAAGCAACCTCAAAAAATCAAGGGAAGCGCTTCGAATATAGAGGCAATGCCGCCGCCACCAATTCCACACACCCAAGAAGAGAATAGTACTGACAATGATTCGGGACTGGAGTCAAGCGAGGCTAAAGCGATTGACGAAGTTGAGGCGAATACGGATGGTGCTGGAGGAGGGAGTTCACAGCAAAAGGAAATTGTTTGGGGGGATATGGCAGAAGATTGGCTTAATGCAATTCCTGCAGGTTGGGGTCCAGGTAGTCCCGTGTGGGATGATTTGGACACCAACAACAGTCTTTTGCTGCAATCAGATCTCCCTTTTACCAATCCAAATCAGCAGGACTATAACATTAACATTAATCCTCAACAAGCGATTCAGAATTCAGGTTCGGGTTCGGGATCTGGTTCCTCTTCTTCCTCTTCATATCCCATGAAGAACCTCTTTTGGAAGGACCAGGATTGA

Protein Analysis

440

Amino Acids

49.04

Weight (kDa)

6.03

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 195 - 244 1.7e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013015)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 1091
AccB1I GGYRCC 2 cut(s) 668, 858
AccII CGCG 1 cut(s) 711
AciI CCGC 9 cut(s) 12, 65, 353, 634, 693, 709, 862, 914, 917
AclWI GGATC 2 cut(s) 265, 1264
AcsI RAATTY 3 cut(s) 304, 484, 1237
AcuI CTGAAG 2 cut(s) 446, 705
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 952
AfeI AGCGCT 1 cut(s) 892
AfiI CCNNNNNNNGG 2 cut(s) 60, 422
AgsI TTSAA 9 cut(s) 96, 155, 228, 295, 332, 374, 484, 721, 846
AjnI CCWGG 4 cut(s) 740, 854, 1111, 1311
AjuI GAANNNNNNNTTGG 2 cut(s) 142, 174
AluBI AGCT 6 cut(s) 158, 173, 626, 683, 760, 803
AluI AGCT 6 cut(s) 158, 173, 626, 683, 760, 803
AlwI GGATC 2 cut(s) 265, 1264
Aor51HI AGCGCT 1 cut(s) 892
AoxI GGCC 4 cut(s) 62, 110, 539, 714
ApeKI GCWGC 7 cut(s) 355, 385, 388, 391, 442, 445, 1159
ApoI RAATTY 3 cut(s) 304, 484, 1237
AseI ATTAAT 1 cut(s) 1215
Asp700I GAANNNNTTC 1 cut(s) 892
AspLEI GCGC 1 cut(s) 893
AspS9I GGNCC 3 cut(s) 527, 1109, 1309
AsuC2I CCSGG 2 cut(s) 78, 557
AsuHPI GGTGA 4 cut(s) 153, 315, 445, 517
AsuII TTCGAA 1 cut(s) 896
AvaII GGWCC 3 cut(s) 527, 1109, 1309
BanI GGYRCC 2 cut(s) 668, 858
BanII GRGCYC 1 cut(s) 134
BbvI GCAGC 7 cut(s) 367, 397, 400, 403, 454, 457, 1146
BccI CCATC 5 cut(s) 216, 220, 418, 527, 1013
BceAI ACGGC 2 cut(s) 114, 620
BciT130I CCWGG 4 cut(s) 742, 856, 1113, 1313
BcnI CCSGG 2 cut(s) 78, 557
BfmI CTRYAG 1 cut(s) 1098
BfoI RGCGCY 1 cut(s) 894
BfuAI ACCTGC 1 cut(s) 1091
BglI GCCNNNNNGGC 2 cut(s) 698, 832
BglII AGATCT 1 cut(s) 1168
BmcAI AGTACT 1 cut(s) 952
Bme1390I CCNGG 6 cut(s) 78, 557, 742, 856, 1113, 1313
Bme18I GGWCC 3 cut(s) 527, 1109, 1309
BmgT120I GGNCC 3 cut(s) 527, 1109, 1309
BmiI GGNNCC 5 cut(s) 528, 670, 860, 1110, 1264
BmrFI CCNGG 6 cut(s) 78, 557, 742, 856, 1113, 1313
BmsI GCATC 2 cut(s) 264, 679
BoxI GACNNNNGTC 1 cut(s) 973
BpmI CTGGAG 2 cut(s) 992, 1047
Bpu10I CCTNAGC 1 cut(s) 756
Bpu14I TTCGAA 1 cut(s) 896
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 78, 557
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 4 cut(s) 68, 555, 696, 830
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 422
Bse1I ACTGG 1 cut(s) 975
Bse3DI GCAATG 2 cut(s) 567, 915
BseBI CCWGG 4 cut(s) 742, 856, 1113, 1313
BseDI CCNNGG 4 cut(s) 68, 555, 696, 830
BseGI GGATG 4 cut(s) 208, 405, 1024, 1135
BseLI CCNNNNNNNGG 2 cut(s) 60, 422
BseMI GCAATG 2 cut(s) 567, 915
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 1 cut(s) 975
BseRI GAGGAG 2 cut(s) 744, 1044
BseXI GCAGC 7 cut(s) 367, 397, 400, 403, 454, 457, 1146
Bsh1236I CGCG 1 cut(s) 711
Bsh1285I CGRYCG 1 cut(s) 709
BshFI GGCC 4 cut(s) 64, 112, 541, 716
BshNI GGYRCC 2 cut(s) 668, 858
BsiEI CGRYCG 1 cut(s) 709
BsiSI CCGG 2 cut(s) 78, 557
BslFI GGGAC 3 cut(s) 540, 981, 1104
BslI CCNNNNNNNGG 2 cut(s) 60, 422
BsmFI GGGAC 3 cut(s) 540, 981, 1104
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 4 cut(s) 64, 112, 541, 716
Bsp119I TTCGAA 1 cut(s) 896
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 3 cut(s) 257, 1168, 1256
Bsp19I CCATGG 2 cut(s) 68, 696
BspACI CCGC 9 cut(s) 12, 65, 353, 634, 693, 709, 862, 914, 917
BspANI GGCC 4 cut(s) 64, 112, 541, 716
BspCNI CTCAG 1 cut(s) 748
BspFNI CGCG 1 cut(s) 711
BspLI GGNNCC 5 cut(s) 528, 670, 860, 1110, 1264
BspMAI CTGCAG 1 cut(s) 1102
BspMI ACCTGC 1 cut(s) 1091
BspPI GGATC 2 cut(s) 265, 1264
BspT104I TTCGAA 1 cut(s) 896
BspT107I GGYRCC 2 cut(s) 668, 858
BsrDI GCAATG 2 cut(s) 567, 915
BsrI ACTGG 1 cut(s) 975
BssECI CCNNGG 4 cut(s) 68, 555, 696, 830
BssMI GATC 3 cut(s) 257, 1168, 1256
BssNI GRCGYC 1 cut(s) 101
BssT1I CCWWGG 3 cut(s) 68, 696, 830
Bst2UI CCWGG 4 cut(s) 742, 856, 1113, 1313
Bst4CI ACNGT 1 cut(s) 1151
Bst6I CTCTTC 4 cut(s) 229, 936, 1273, 1282
BstACI GRCGYC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 1097
BstBI TTCGAA 1 cut(s) 896
BstC8I GCNNGC 2 cut(s) 539, 866
BstDEI CTNAG 1 cut(s) 756
BstDSI CCRYGG 2 cut(s) 68, 696
BstENI CCTNNNNNAGG 1 cut(s) 58
BstF5I GGATG 4 cut(s) 208, 405, 1024, 1135
BstFNI CGCG 1 cut(s) 711
BstH2I RGCGCY 1 cut(s) 894
BstHHI GCGC 1 cut(s) 893
BstKTI GATC 3 cut(s) 260, 1171, 1259
BstMBI GATC 3 cut(s) 257, 1168, 1256
BstMCI CGRYCG 1 cut(s) 709
BstMWI GCNNNNNNNGC 9 cut(s) 73, 98, 274, 391, 689, 698, 832, 865, 1097
BstNI CCWGG 4 cut(s) 742, 856, 1113, 1313
BstPAI GACNNNNGTC 1 cut(s) 973
BstSCI CCNGG 6 cut(s) 76, 555, 740, 854, 1111, 1311
BstSFI CTRYAG 1 cut(s) 1098
BstUI CGCG 1 cut(s) 711
BstV1I GCAGC 7 cut(s) 367, 397, 400, 403, 454, 457, 1146
BstX2I RGATCY 3 cut(s) 257, 1168, 1256
BstYI RGATCY 3 cut(s) 257, 1168, 1256
BsuRI GGCC 4 cut(s) 64, 112, 541, 716
BtgI CCRYGG 2 cut(s) 68, 696
BtgZI GCGATG 2 cut(s) 184, 396
BtsCI GGATG 4 cut(s) 208, 405, 1024, 1135
BveI ACCTGC 1 cut(s) 1091
Cac8I GCNNGC 2 cut(s) 539, 866
CfoI GCGC 1 cut(s) 893
Cfr13I GGNCC 3 cut(s) 527, 1109, 1309
CseI GACGC 2 cut(s) 90, 485
Csp6I GTAC 1 cut(s) 951
CviAII CATG 4 cut(s) 69, 697, 836, 1288
CviQI GTAC 1 cut(s) 951
DdeI CTNAG 1 cut(s) 756
DpnI GATC 3 cut(s) 259, 1170, 1258
DpnII GATC 3 cut(s) 257, 1168, 1256
Eam1104I CTCTTC 4 cut(s) 229, 936, 1273, 1282
EarI CTCTTC 4 cut(s) 229, 936, 1273, 1282
EciI GGCGGA 1 cut(s) 623
Eco130I CCWWGG 3 cut(s) 68, 696, 830
Eco147I AGGCCT 2 cut(s) 112, 716
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 3 cut(s) 527, 1109, 1309
Eco47III AGCGCT 1 cut(s) 892
Eco57I CTGAAG 2 cut(s) 446, 705
EcoNI CCTNNNNNAGG 1 cut(s) 58
EcoRI GAATTC 1 cut(s) 1237
EcoRII CCWGG 4 cut(s) 740, 854, 1111, 1311
EcoT14I CCWWGG 3 cut(s) 68, 696, 830
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 3 cut(s) 68, 696, 830
FaeI CATG 4 cut(s) 72, 700, 839, 1291
FalI AAGNNNNNCTT 4 cut(s) 1068, 1100, 1283, 1315
FaqI GGGAC 3 cut(s) 540, 981, 1104
FatI CATG 4 cut(s) 68, 696, 835, 1287
FokI GGATG 4 cut(s) 195, 412, 1031, 1142
FriOI GRGCYC 1 cut(s) 134
GlaI GCGC 1 cut(s) 892
GsuI CTGGAG 2 cut(s) 992, 1047
HaeII RGCGCY 1 cut(s) 894
HaeIII GGCC 4 cut(s) 64, 112, 541, 716
HapII CCGG 2 cut(s) 78, 557
HgaI GACGC 2 cut(s) 90, 485
HhaI GCGC 1 cut(s) 893
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 4 cut(s) 72, 700, 839, 1291
Hin6I GCGC 1 cut(s) 891
HinP1I GCGC 1 cut(s) 891
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 7 cut(s) 374, 428, 490, 652, 962, 974, 1231
HpaII CCGG 2 cut(s) 78, 557
HphI GGTGA 4 cut(s) 153, 315, 445, 517
Hpy166II GTNNAC 1 cut(s) 1040
Hpy188I TCNGA 4 cut(s) 425, 784, 1168, 1236
Hpy188III TCNNGA 5 cut(s) 58, 118, 127, 966, 1254
Hpy8I GTNNAC 1 cut(s) 1040
Hpy99I CGWCG 2 cut(s) 106, 257
HpyAV CCTTC 7 cut(s) 64, 174, 198, 647, 727, 833, 1300
HpyCH4III ACNGT 1 cut(s) 1151
HpyCH4V TGCA 4 cut(s) 277, 1091, 1100, 1162
HpyF10VI GCNNNNNNNGC 9 cut(s) 73, 98, 274, 391, 689, 698, 832, 865, 1097
HpyF3I CTNAG 1 cut(s) 756
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 4 cut(s) 72, 700, 839, 1291
HspAI GCGC 1 cut(s) 891
Kzo9I GATC 3 cut(s) 257, 1168, 1256
LmnI GCTCC 2 cut(s) 208, 808
Lsp1109I GCAGC 7 cut(s) 367, 397, 400, 403, 454, 457, 1146
LweI GCATC 2 cut(s) 264, 679
MaeIII GTNAC 2 cut(s) 473, 546
MalI GATC 3 cut(s) 259, 1170, 1258
MboI GATC 3 cut(s) 257, 1168, 1256
MflI RGATCY 3 cut(s) 257, 1168, 1256
MhlI GDGCHC 1 cut(s) 134
MlyI GAGTC 4 cut(s) 437, 499, 646, 983
MmeI TCCRAC 1 cut(s) 403
MroXI GAANNNNTTC 1 cut(s) 892
MseI TTAA 3 cut(s) 1086, 1209, 1215
MslI CAYNNNNRTG 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 78, 557
MspR9I CCNGG 6 cut(s) 78, 557, 742, 856, 1113, 1313
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 4 cut(s) 742, 856, 1113, 1313
MvnI CGCG 1 cut(s) 711
MwoI GCNNNNNNNGC 9 cut(s) 73, 98, 274, 391, 689, 698, 832, 865, 1097
NciI CCSGG 2 cut(s) 78, 557
NcoI CCATGG 2 cut(s) 68, 696
NdeII GATC 3 cut(s) 257, 1168, 1256
NlaIII CATG 4 cut(s) 72, 700, 839, 1291
NlaIV GGNNCC 5 cut(s) 528, 670, 860, 1110, 1264
NmuCI GTSAC 1 cut(s) 473
NspV TTCGAA 1 cut(s) 896
PceI AGGCCT 2 cut(s) 112, 716
PctI GAATGC 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 3 cut(s) 374, 962, 1231
PleI GAGTC 4 cut(s) 436, 498, 646, 982
PpsI GAGTC 4 cut(s) 436, 498, 646, 982
PshAI GACNNNNGTC 1 cut(s) 973
PshBI ATTAAT 1 cut(s) 1215
PsiI TTATAA 1 cut(s) 570
Psp6I CCWGG 4 cut(s) 740, 854, 1111, 1311
PspGI CCWGG 4 cut(s) 740, 854, 1111, 1311
PspN4I GGNNCC 5 cut(s) 528, 670, 860, 1110, 1264
PspPI GGNCC 3 cut(s) 527, 1109, 1309
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 3 cut(s) 257, 1168, 1256
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 1 cut(s) 952
RsaNI GTAC 1 cut(s) 951
RseI CAYNNNNRTG 1 cut(s) 471
SaqAI TTAA 3 cut(s) 1086, 1209, 1215
Sau3AI GATC 3 cut(s) 257, 1168, 1256
Sau96I GGNCC 3 cut(s) 527, 1109, 1309
SbfI CCTGCAGG 1 cut(s) 1102
ScaI AGTACT 1 cut(s) 952
SchI GAGTC 4 cut(s) 437, 499, 646, 983
ScrFI CCNGG 6 cut(s) 78, 557, 742, 856, 1113, 1313
SdaI CCTGCAGG 1 cut(s) 1102
SduI GDGCHC 1 cut(s) 134
SfaNI GCATC 2 cut(s) 264, 679
SfcI CTRYAG 1 cut(s) 1098
SfuI TTCGAA 1 cut(s) 896
SinI GGWCC 3 cut(s) 527, 1109, 1309
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse8387I CCTGCAGG 1 cut(s) 1102
SseBI AGGCCT 2 cut(s) 112, 716
SsiI CCGC 9 cut(s) 12, 65, 353, 634, 693, 709, 862, 914, 917
StuI AGGCCT 2 cut(s) 112, 716
StyD4I CCNGG 6 cut(s) 76, 555, 740, 854, 1111, 1311
StyI CCWWGG 3 cut(s) 68, 696, 830
TaaI ACNGT 1 cut(s) 1151
TaqI TCGA 5 cut(s) 57, 104, 252, 643, 896
TatI WGTACW 1 cut(s) 950
TauI GCSGC 4 cut(s) 67, 695, 916, 919
TfiI GAWTC 3 cut(s) 374, 962, 1231
Tru1I TTAA 3 cut(s) 1086, 1209, 1215
Tru9I TTAA 3 cut(s) 1086, 1209, 1215
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 7 cut(s) 355, 385, 388, 391, 442, 445, 1159
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 5 cut(s) 530, 786, 852, 1269, 1304
TspGWI ACGGA 2 cut(s) 270, 1031
VpaK11BI GGWCC 3 cut(s) 527, 1109, 1309
VspI ATTAAT 1 cut(s) 1215
XagI CCTNNNNNAGG 1 cut(s) 58
XapI RAATTY 3 cut(s) 304, 484, 1237
XmnI GAANNNNTTC 1 cut(s) 892
ZrmI AGTACT 1 cut(s) 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.