Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000264.1

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

196546 .. 197901

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000264.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atggaaacaagccgagattgtgaccttgacaagggcaaggaacgtgattttttcttggagagttgtcaatggaagccggtttttgatgaagcttcaatgtcacatagacctcttaagaagatcaagagccctgaacatagtcatcagcaccaatcctcctctgcttttccccctgaatttcatatcccatcttctcctcctcgtagttcatcagatacatcatcaatcacttcttgttgtcctttttcttccagaatagtctttccttttgcttttgatgggtccctgcctcagcagcagcaacctatacaatttccccaccaattccagaccacaggtctgcagcctatacaattcccgccaactacaaatgttgtagagcagcagcagcagcaacaacaaaatcagcagcagatgatatctttcacatcgcagcagcaacaaatgatatcttggcggcagcagcagcaacagcaaatgcttcagtattggagtgatgctttgaatttgagtccaagaggaaggatgatgatgatgaacaggtttggaggagctaatagtagtggtggtattaggccagcggcgatgcctgtaagtactagtaagctttacaggggagtaaggcaaaggcattggggcaaatgggtagctgaaattcgtcttcctcgaaacaggactcgcctctggctgggcaccttcgacaccgctgaagatgctgccatggcttatgaccgtgaggctttcaagttgagaggagagaatgctaagcttaatttccctgagcttttcctcaacaaagacaaagataataataatgctgcagctgtttccacagctccaagttcaaccgaaactgcttctgtgccgactcaacaagtttcaaagccatccaggcaccggggtaagccgctactgaaagaccttgatttacaattacaggttccaatttcagatagggaaacaattgcacctccaccagcgccatattcacatccccaggaagacgatgacactggtgaaagtgatttggccaatgccagccagcaatctgaggttgaaaatcatggcgaaggaggagggatcatttcagatgccccaacacaggaaatggcttggggagaaatggcagaggcttggatgaatgcaattccacaaggttggggtcctggtagtcctgtctgggatgatttagagttggacatgacttccaacaatcttgtgctgcaatctcatgattatcaccattttacggccaataatccgaatcggcatgaacttccgcagcaggaagacaactcttgttctgcttcatcttcatatcccatgcagcccttcttttggaaagatcaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

451

Amino Acids

51.02

Weight (kDa)

5.47

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	692, 894
AciI	CCGC	6 cut(s)	359, 457, 581, 705, 908, 1280
AclWI	GGATC	1 cut(s)	1088
AcoI	YGGCCR	2 cut(s)	1029, 1251
AcsI	RAATTY	3 cut(s)	176, 505, 654
AcuI	CTGAAG	2 cut(s)	467, 729
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	6 cut(s)	31, 688, 897, 1102, 1249, 1338
AflII	CTTAAG	1 cut(s)	113
AgsI	TTSAA	6 cut(s)	96, 505, 745, 846, 882, 1058
AhdI	GACNNNNNGTC	1 cut(s)	336
AhlI	ACTAGT	1 cut(s)	599
AjnI	CCWGG	3 cut(s)	890, 996, 1165
AluBI	AGCT	8 cut(s)	92, 554, 607, 650, 769, 784, 824, 836
AluI	AGCT	8 cut(s)	92, 554, 607, 650, 769, 784, 824, 836
AlwI	GGATC	1 cut(s)	1088
AoxI	GGCC	3 cut(s)	575, 1029, 1251
ApoI	RAATTY	3 cut(s)	176, 505, 654
AspLEI	GCGC	1 cut(s)	982
AspS9I	GGNCC	2 cut(s)	282, 1163
AsuC2I	CCSGG	1 cut(s)	899
AsuHPI	GGTGA	2 cut(s)	1028, 1232
AvaII	GGWCC	2 cut(s)	282, 1163
BaeGI	GKGCMC	1 cut(s)	695
BalI	TGGCCA	1 cut(s)	1031
BanI	GGYRCC	2 cut(s)	692, 894
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	3 cut(s)	653, 1008, 1296
BbvCI	CCTCAGC	1 cut(s)	291
BccI	CCATC	3 cut(s)	196, 272, 895
BceAI	ACGGC	1 cut(s)	1266
BciT130I	CCWGG	3 cut(s)	892, 998, 1167
BcnI	CCSGG	1 cut(s)	899
BcuI	ACTAGT	1 cut(s)	599
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	2 cut(s)	341, 819
BfoI	RGCGCY	1 cut(s)	983
BfrI	CTTAAG	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	892
BlpI	GCTNAGC	1 cut(s)	765
BmcAI	AGTACT	1 cut(s)	598
Bme1390I	CCNGG	4 cut(s)	892, 899, 998, 1167
Bme18I	GGWCC	2 cut(s)	282, 1163
BmeRI	GACNNNNNGTC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	282, 1163
BmiI	GGNNCC	6 cut(s)	283, 284, 694, 896, 942, 1164
BmrFI	CCNGG	4 cut(s)	892, 899, 998, 1167
BmsI	GCATC	4 cut(s)	487, 576, 703, 1081
BpiI	GAAGAC	3 cut(s)	653, 1008, 1296
Bpu10I	CCTNAGC	2 cut(s)	291, 780
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuMI	CCSGG	1 cut(s)	899
BsaJI	CCNNGG	3 cut(s)	720, 898, 996
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 688, 897, 1102, 1249, 1338
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	1018
BseBI	CCWGG	3 cut(s)	892, 998, 1167
BseDI	CCNNGG	3 cut(s)	720, 898, 996
BseGI	GGATG	5 cut(s)	531, 887, 991, 1143, 1189
BseLI	CCNNNNNNNGG	6 cut(s)	31, 688, 897, 1102, 1249, 1338
BseMII	CTCAG	3 cut(s)	305, 771, 1041
BseNI	ACTGG	1 cut(s)	1018
BseRI	GAGGAG	6 cut(s)	148, 186, 189, 564, 768, 1089
BseSI	GKGCMC	1 cut(s)	695
BseYI	CCCAGC	1 cut(s)	688
BshFI	GGCC	3 cut(s)	577, 1031, 1253
BshNI	GGYRCC	2 cut(s)	692, 894
BsiSI	CCGG	2 cut(s)	77, 898
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	6 cut(s)	31, 688, 897, 1102, 1249, 1338
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	2 cut(s)	766, 1147
BsnI	GGCC	3 cut(s)	577, 1031, 1253
Bsp1286I	GDGCHC	2 cut(s)	131, 695
Bsp143I	GATC	3 cut(s)	120, 1080, 1345
Bsp1720I	GCTNAGC	1 cut(s)	765
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	6 cut(s)	359, 457, 581, 705, 908, 1280
BspANI	GGCC	3 cut(s)	577, 1031, 1253
BspCNI	CTCAG	3 cut(s)	304, 772, 1042
BspHI	TCATGA	1 cut(s)	1231
BspLI	GGNNCC	6 cut(s)	283, 284, 694, 896, 942, 1164
BspMAI	CTGCAG	2 cut(s)	345, 823
BspPI	GGATC	1 cut(s)	1088
BspT107I	GGYRCC	2 cut(s)	692, 894
BspTI	CTTAAG	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	1018
BssAI	RCCGGY	1 cut(s)	76
BssECI	CCNNGG	3 cut(s)	720, 898, 996
BssMI	GATC	3 cut(s)	120, 1080, 1345
BssT1I	CCWWGG	1 cut(s)	720
Bst2UI	CCWGG	3 cut(s)	892, 998, 1167
Bst4CI	ACNGT	1 cut(s)	734
BstAFI	CTTAAG	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	579, 1039, 1043
BstDEI	CTNAG	4 cut(s)	291, 765, 780, 1050
BstDSI	CCRYGG	1 cut(s)	720
BstENI	CCTNNNNNAGG	1 cut(s)	29
BstF5I	GGATG	5 cut(s)	531, 887, 991, 1143, 1189
BstH2I	RGCGCY	1 cut(s)	983
BstHHI	GCGC	1 cut(s)	982
BstKTI	GATC	3 cut(s)	123, 1083, 1348
BstMBI	GATC	3 cut(s)	120, 1080, 1345
BstMWI	GCNNNNNNNGC	9 cut(s)	295, 388, 391, 463, 466, 472, 713, 722, 892
BstNI	CCWGG	3 cut(s)	892, 998, 1167
BstSCI	CCNGG	4 cut(s)	890, 897, 996, 1165
BstSFI	CTRYAG	2 cut(s)	341, 819
BstSLI	GKGCMC	1 cut(s)	695
BstV2I	GAAGAC	3 cut(s)	653, 1008, 1296
BstXI	CCANNNNNNTGG	1 cut(s)	1158
BsuRI	GGCC	3 cut(s)	577, 1031, 1253
BtgI	CCRYGG	1 cut(s)	720
BtgZI	GCGATG	2 cut(s)	414, 599
BtsCI	GGATG	5 cut(s)	531, 887, 991, 1143, 1189
BtsIMutI	CAGTG	1 cut(s)	1011
Cac8I	GCNNGC	3 cut(s)	579, 1039, 1043
CciI	TCATGA	1 cut(s)	1231
CfoI	GCGC	1 cut(s)	982
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	282, 1163
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	6 cut(s)	721, 1064, 1201, 1232, 1271, 1324
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	4 cut(s)	291, 765, 780, 1050
DpnI	GATC	3 cut(s)	122, 1082, 1347
DpnII	GATC	3 cut(s)	120, 1080, 1345
DriI	GACNNNNNGTC	1 cut(s)	336
EaeI	YGGCCR	2 cut(s)	1029, 1251
Eam1105I	GACNNNNNGTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	720
Eco24I	GRGCYC	1 cut(s)	131
Eco32I	GATATC	2 cut(s)	420, 450
Eco47I	GGWCC	2 cut(s)	282, 1163
Eco57I	CTGAAG	2 cut(s)	467, 729
EcoNI	CCTNNNNNAGG	1 cut(s)	29
EcoO109I	RGGNCCY	2 cut(s)	282, 1163
EcoRII	CCWGG	3 cut(s)	890, 996, 1165
EcoRV	GATATC	2 cut(s)	420, 450
EcoT14I	CCWWGG	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	720
FaeI	CATG	6 cut(s)	724, 1067, 1204, 1235, 1274, 1327
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	6 cut(s)	720, 1063, 1200, 1231, 1270, 1323
FauI	CCCGC	1 cut(s)	366
FokI	GGATG	5 cut(s)	538, 874, 978, 1150, 1196
FriOI	GRGCYC	1 cut(s)	131
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	981
GsaI	CCCAGC	1 cut(s)	692
HaeII	RGCGCY	1 cut(s)	983
HaeIII	GGCC	3 cut(s)	577, 1031, 1253
HapII	CCGG	2 cut(s)	77, 898
HhaI	GCGC	1 cut(s)	982
Hin1II	CATG	6 cut(s)	724, 1067, 1204, 1235, 1274, 1327
Hin6I	GCGC	1 cut(s)	980
HinP1I	GCGC	1 cut(s)	980
HindIII	AAGCTT	3 cut(s)	90, 605, 767
HinfI	GANTC	4 cut(s)	511, 676, 868, 1264
HpaII	CCGG	2 cut(s)	77, 898
HphI	GGTGA	2 cut(s)	1028, 1232
Hpy188I	TCNGA	5 cut(s)	214, 952, 1051, 1090, 1263
Hpy188III	TCNNGA	5 cut(s)	124, 252, 328, 1232, 1349
HpyAV	CCTTC	4 cut(s)	516, 706, 1064, 1342
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	6 cut(s)	343, 821, 968, 1145, 1225, 1327
HpyF10VI	GCNNNNNNNGC	9 cut(s)	295, 388, 391, 463, 466, 472, 713, 722, 892
HpyF3I	CTNAG	4 cut(s)	291, 765, 780, 1050
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	6 cut(s)	724, 1067, 1204, 1235, 1274, 1327
HspAI	GCGC	1 cut(s)	980
KflI	GGGWCCC	1 cut(s)	282
Kzo9I	GATC	3 cut(s)	120, 1080, 1345
LmnI	GCTCC	2 cut(s)	551, 841
LweI	GCATC	4 cut(s)	487, 576, 703, 1081
MaeI	CTAG	1 cut(s)	600
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	2 cut(s)	20, 99
MalI	GATC	3 cut(s)	122, 1082, 1347
MboI	GATC	3 cut(s)	120, 1080, 1345
MboII	GAAGA	8 cut(s)	130, 183, 240, 653, 722, 1013, 1301, 1305
MfeI	CAATTG	1 cut(s)	963
MhlI	GDGCHC	2 cut(s)	131, 695
MlsI	TGGCCA	1 cut(s)	1031
MluNI	TGGCCA	1 cut(s)	1031
MlyI	GAGTC	3 cut(s)	520, 670, 862
MmeI	TCCRAC	2 cut(s)	1176, 1233
Mox20I	TGGCCA	1 cut(s)	1031
MscI	TGGCCA	1 cut(s)	1031
MseI	TTAA	2 cut(s)	114, 771
Msp20I	TGGCCA	1 cut(s)	1031
MspA1I	CMGCKG	3 cut(s)	581, 707, 824
MspCI	CTTAAG	1 cut(s)	113
MspI	CCGG	2 cut(s)	77, 898
MspR9I	CCNGG	4 cut(s)	892, 899, 998, 1167
MunI	CAATTG	1 cut(s)	963
Mva1269I	GAATGC	2 cut(s)	766, 1147
MvaI	CCWGG	3 cut(s)	892, 998, 1167
MwoI	GCNNNNNNNGC	9 cut(s)	295, 388, 391, 463, 466, 472, 713, 722, 892
NciI	CCSGG	1 cut(s)	899
NcoI	CCATGG	1 cut(s)	720
NdeII	GATC	3 cut(s)	120, 1080, 1345
NlaIII	CATG	6 cut(s)	724, 1067, 1204, 1235, 1274, 1327
NlaIV	GGNNCC	6 cut(s)	283, 284, 694, 896, 942, 1164
NmeAIII	GCCGAG	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	20, 99
PagI	TCATGA	1 cut(s)	1231
PcsI	WCGNNNNNNNCGW	1 cut(s)	664
PctI	GAATGC	2 cut(s)	766, 1147
PfeI	GAWTC	1 cut(s)	1264
PleI	GAGTC	3 cut(s)	519, 670, 862
PpsI	GAGTC	3 cut(s)	519, 670, 862
PpuMI	RGGWCCY	2 cut(s)	282, 1163
Psp5II	RGGWCCY	2 cut(s)	282, 1163
Psp6I	CCWGG	3 cut(s)	890, 996, 1165
PspFI	CCCAGC	1 cut(s)	688
PspGI	CCWGG	3 cut(s)	890, 996, 1165
PspN4I	GGNNCC	6 cut(s)	283, 284, 694, 896, 942, 1164
PspPI	GGNCC	2 cut(s)	282, 1163
PspPPI	RGGWCCY	2 cut(s)	282, 1163
PstI	CTGCAG	2 cut(s)	345, 823
PvuII	CAGCTG	1 cut(s)	824
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
SaqAI	TTAA	2 cut(s)	114, 771
Sau3AI	GATC	3 cut(s)	120, 1080, 1345
Sau96I	GGNCC	2 cut(s)	282, 1163
ScaI	AGTACT	1 cut(s)	598
SchI	GAGTC	3 cut(s)	520, 670, 862
ScrFI	CCNGG	4 cut(s)	892, 899, 998, 1167
SduI	GDGCHC	2 cut(s)	131, 695
SfaNI	GCATC	4 cut(s)	487, 576, 703, 1081
SfcI	CTRYAG	2 cut(s)	341, 819
SinI	GGWCC	2 cut(s)	282, 1163
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
SpeI	ACTAGT	1 cut(s)	599
SsiI	CCGC	6 cut(s)	359, 457, 581, 705, 908, 1280
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	890, 897, 996, 1165
StyI	CCWWGG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	1 cut(s)	46
TaqI	TCGA	2 cut(s)	667, 699
TatI	WGTACW	1 cut(s)	596
TauI	GCSGC	3 cut(s)	460, 584, 910
TfiI	GAWTC	1 cut(s)	1264
Tru1I	TTAA	2 cut(s)	114, 771
Tru9I	TTAA	2 cut(s)	114, 771
TscAI	CASTG	1 cut(s)	1018
TseFI	GTSAC	2 cut(s)	20, 99
Tsp45I	GTSAC	2 cut(s)	20, 99
TspDTI	ATGAA	8 cut(s)	102, 170, 198, 551, 1154, 1287, 1299, 1305
TspRI	CASTG	1 cut(s)	1018
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	282, 1163
XagI	CCTNNNNNAGG	1 cut(s)	29
XapI	RAATTY	3 cut(s)	176, 505, 654
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.