Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013015

Physical Location & Seq

Genomic Coordinates Reverse (-)

32316315 .. 32317682

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1252000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGTCTTCACCAAAAAAGAGTGGTAAGTCTAAGATGGAGACAAGCGGAGAATGGGAGGCGAACAAAGACAAGGAGGTTGATTTTTCCTTCGAGAGACCGCCATGGAAGCCCGGTTTTAGTGAGGCTTCAACGGCGTCGAATAGGCCTCTCAAGAAAGTCAAGAGCCCTGAAAGGCAAGACCCAATTCAAGCTTCACCTTCTTTAGATCATCATCAAACACCTTCGCCAATCATTGCTCCCCATCCATCTTCTTCCTCTTCAAAAATAGTTTTTCCTTTTTCTTTCGACGGGTCTCAACAGCCTATGATGCAATTCCCCCACCAGTTCAACCCCACAAATTTGCCTATGTTTCCCTCACCAATTCAACAGCAACTGCAACAAAATCCTCAGCAAATGATTTCTTTTGAATCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGATGAGTTATCCACCGCCTTTTGTCGGAGAGTCGGTGAGTTGGCAGCAGCACCAGAAAATGCTTCAGCATTGGAGTGACGCTTTAAATTTGAGTCCAAGAGGGAGGGTGATGATGAACAGGTTGGGACCAGATGGCAGGCCAATGTTTCGACCCCCGGCAATGCCTTACAATACTACAAAACTTTACAGGGGAGTGAGGCAACGGCATTGGGGCAAATGGGTAGCTGAAATCCGCCTTCCTCGAAACAGGACTCGCCTCTGGCTTGGCACCTTCGACACAGCTGAAGATGCCGCCATGGCTTACGACCGCGAGGCCTTCAAGTTGAGAGGAGAGAATGCCAGGCTCAATTTCCCTGAGCTTTTTCTCAACAAAGACAAATCAGATGTTTCAGTTTCATCAGCTCCGAGTTCAGCTGCTACTTCGCCTCCAAGGCATGAGGGTTCAAAACCAACCAGGAACCGCAAGCAACCTCAAAAAATCAAGAGCAGCGCTTCGAATATAGAGGCAATGCCACCGCCACCAATTCCACATACCCAAGAAGAGAATAGTACTGACAATTATTCAGGACTGGAGTCGAACGAGGCTAAAGCGATTGACGAAGTTGAGGTGAATATCGATGGTGCTGGAGGAGGGAGTTCACAGCAAAAGGAAATTGTTTGGGGGGATATGGCAGAAGATTGGCTTAATGCAATTCCTGCAGGTTGGGGTCCAGGTAGTCCTGTGTGGGATGATTTGGACAACAATCTTTTGCTGCAATCACATCTCCCTTTTACCAATCCAAACCAGCAGGACTATAACATTAACATTAATCCTCAACAAGCGATTCAGAATTCAGGTTCGGGTTCGGGATCTGGTTCCTCTTCTTCCTCTTCACATCCCACGAAGAACCTCTTTTGGAAGGACCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0080135 GO:0097159 GO:0140110 GO:1900034 GO:1900036 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000070 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

456

Amino Acids

51.02

Weight (kDa)

6.85

Isoelectric Point (pI)

66.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	213 - 262	1.8e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20880 AT4G28140
fragaria_vesca	FvH4_6g26090
malus_domestica	MD09G1252000.v1.1 MD17G1244300.v1.1
prunus_persica	Prupe.3G157100_v2.0.a1
pyrus_communis	pycom09g16830 pycom17g24710
rosa_chinensis	RchiOBHm_Chr2g0126301
rosa_laevigata	RLG00000018898
rosa_multiflora	Rmu_ssc0000264.1_g000034
rosa_roxburghii	Rroxscaffold_2G00117280
rosa_rugosa	Rorug02G0262400
rosa_samantha	Rh2AG319300 Rh2BG327700 Rh2CG307700 Rh2DG347300
rosa_wichuraiana	Rw2G025870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1145
AccB1I	GGYRCC	1 cut(s)	722
AccII	CGCG	1 cut(s)	765
AciI	CCGC	8 cut(s)	45, 98, 470, 688, 747, 763, 916, 971
AclWI	GGATC	1 cut(s)	1312
AcsI	RAATTY	3 cut(s)	337, 541, 1285
AcuI	CTGAAG	2 cut(s)	503, 759
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	1 cut(s)	1006
AfeI	AGCGCT	1 cut(s)	946
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	8 cut(s)	129, 188, 261, 328, 365, 407, 775, 900
AjnI	CCWGG	4 cut(s)	794, 908, 1165, 1359
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	6 cut(s)	191, 680, 737, 814, 857, 869
AluI	AGCT	6 cut(s)	191, 680, 737, 814, 857, 869
Alw26I	GTCTC	3 cut(s)	32, 88, 297
AlwI	GGATC	1 cut(s)	1312
AlwNI	CAGNNNCTG	1 cut(s)	373
Aor51HI	AGCGCT	1 cut(s)	946
AoxI	GGCC	3 cut(s)	143, 593, 768
ApoI	RAATTY	3 cut(s)	337, 541, 1285
AseI	ATTAAT	1 cut(s)	1263
AspLEI	GCGC	1 cut(s)	947
AspS9I	GGNCC	3 cut(s)	581, 1163, 1357
AsuC2I	CCSGG	2 cut(s)	111, 611
AsuHPI	GGTGA	5 cut(s)	186, 348, 502, 574, 1075
AsuII	TTCGAA	1 cut(s)	950
AvaII	GGWCC	3 cut(s)	581, 1163, 1357
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	167
BbvCI	CCTCAGC	1 cut(s)	387
BccI	CCATC	5 cut(s)	28, 249, 253, 581, 1067
BceAI	ACGGC	2 cut(s)	147, 674
BciT130I	CCWGG	4 cut(s)	796, 910, 1167, 1361
BcnI	CCSGG	2 cut(s)	111, 611
BcoDI	GTCTC	3 cut(s)	32, 88, 297
BfmI	CTRYAG	1 cut(s)	1152
BfoI	RGCGCY	1 cut(s)	948
BfuAI	ACCTGC	1 cut(s)	1145
BglI	GCCNNNNNGGC	2 cut(s)	752, 886
BmcAI	AGTACT	1 cut(s)	1006
Bme1390I	CCNGG	6 cut(s)	111, 611, 796, 910, 1167, 1361
Bme18I	GGWCC	3 cut(s)	581, 1163, 1357
BmgT120I	GGNCC	3 cut(s)	581, 1163, 1357
BmiI	GGNNCC	5 cut(s)	582, 724, 914, 1164, 1312
BmrFI	CCNGG	6 cut(s)	111, 611, 796, 910, 1167, 1361
BmsI	GCATC	2 cut(s)	297, 733
BoxI	GACNNNNGTC	1 cut(s)	1027
BpmI	CTGGAG	2 cut(s)	1046, 1101
Bpu10I	CCTNAGC	2 cut(s)	387, 810
Bpu14I	TTCGAA	1 cut(s)	950
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	111, 611
Bsa29I	ATCGAT	1 cut(s)	1071
BsaBI	GATNNNNATC	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	134
BsaI	GGTCTC	2 cut(s)	88, 297
BsaJI	CCNNGG	4 cut(s)	101, 609, 750, 884
BsaXI	ACNNNNNCTCC	4 cut(s)	474, 504, 865, 895
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	322, 1029
Bse3DI	GCAATG	3 cut(s)	231, 621, 969
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	4 cut(s)	796, 910, 1167, 1361
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	4 cut(s)	101, 609, 750, 884
BseGI	GGATG	4 cut(s)	241, 462, 1189, 1330
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	3 cut(s)	231, 621, 969
BseMII	CTCAG	2 cut(s)	401, 801
BseNI	ACTGG	2 cut(s)	322, 1029
BseRI	GAGGAG	2 cut(s)	798, 1098
BseYI	CCCAGC	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	765
Bsh1285I	CGRYCG	1 cut(s)	763
BshFI	GGCC	3 cut(s)	145, 595, 770
BshNI	GGYRCC	1 cut(s)	722
BshVI	ATCGAT	1 cut(s)	1071
BsiEI	CGRYCG	1 cut(s)	763
BsiSI	CCGG	2 cut(s)	111, 611
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	3 cut(s)	32, 88, 297
BsmFI	GGGAC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	3 cut(s)	145, 595, 770
Bso31I	GGTCTC	2 cut(s)	88, 297
Bsp119I	TTCGAA	1 cut(s)	950
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	2 cut(s)	205, 1304
Bsp19I	CCATGG	2 cut(s)	101, 750
BspACI	CCGC	8 cut(s)	45, 98, 470, 688, 747, 763, 916, 971
BspANI	GGCC	3 cut(s)	145, 595, 770
BspCNI	CTCAG	2 cut(s)	400, 802
BspDI	ATCGAT	1 cut(s)	1071
BspFNI	CGCG	1 cut(s)	765
BspLI	GGNNCC	5 cut(s)	582, 724, 914, 1164, 1312
BspMAI	CTGCAG	1 cut(s)	1156
BspMI	ACCTGC	1 cut(s)	1145
BspPI	GGATC	1 cut(s)	1312
BspT104I	TTCGAA	1 cut(s)	950
BspT107I	GGYRCC	1 cut(s)	722
BspTNI	GGTCTC	2 cut(s)	88, 297
BsrDI	GCAATG	3 cut(s)	231, 621, 969
BsrI	ACTGG	2 cut(s)	322, 1029
BssECI	CCNNGG	4 cut(s)	101, 609, 750, 884
BssMI	GATC	2 cut(s)	205, 1304
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	3 cut(s)	101, 750, 884
Bst2UI	CCWGG	4 cut(s)	796, 910, 1167, 1361
Bst6I	CTCTTC	4 cut(s)	262, 990, 1321, 1330
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	1151
BstBI	TTCGAA	1 cut(s)	950
BstC8I	GCNNGC	2 cut(s)	593, 920
BstDEI	CTNAG	3 cut(s)	30, 387, 810
BstDSI	CCRYGG	2 cut(s)	101, 750
BstF5I	GGATG	4 cut(s)	241, 462, 1189, 1330
BstFNI	CGCG	1 cut(s)	765
BstH2I	RGCGCY	1 cut(s)	948
BstHHI	GCGC	1 cut(s)	947
BstKTI	GATC	2 cut(s)	208, 1307
BstMAI	GTCTC	3 cut(s)	32, 88, 297
BstMBI	GATC	2 cut(s)	205, 1304
BstMCI	CGRYCG	1 cut(s)	763
BstNI	CCWGG	4 cut(s)	796, 910, 1167, 1361
BstPAI	GACNNNNGTC	1 cut(s)	1027
BstSCI	CCNGG	6 cut(s)	109, 609, 794, 908, 1165, 1359
BstSFI	CTRYAG	1 cut(s)	1152
BstUI	CGCG	1 cut(s)	765
BstX2I	RGATCY	1 cut(s)	1304
BstYI	RGATCY	1 cut(s)	1304
Bsu15I	ATCGAT	1 cut(s)	1071
BsuRI	GGCC	3 cut(s)	145, 595, 770
BsuTUI	ATCGAT	1 cut(s)	1071
BtgI	CCRYGG	2 cut(s)	101, 750
BtsCI	GGATG	4 cut(s)	241, 462, 1189, 1330
BveI	ACCTGC	1 cut(s)	1145
Cac8I	GCNNGC	2 cut(s)	593, 920
CaiI	CAGNNNCTG	1 cut(s)	373
CfoI	GCGC	1 cut(s)	947
Cfr13I	GGNCC	3 cut(s)	581, 1163, 1357
ClaI	ATCGAT	1 cut(s)	1071
CseI	GACGC	2 cut(s)	123, 542
Csp6I	GTAC	1 cut(s)	1005
CviAII	CATG	3 cut(s)	102, 751, 890
CviQI	GTAC	1 cut(s)	1005
DdeI	CTNAG	3 cut(s)	30, 387, 810
DpnI	GATC	2 cut(s)	207, 1306
DpnII	GATC	2 cut(s)	205, 1304
DraI	TTTAAA	1 cut(s)	540
Eam1104I	CTCTTC	4 cut(s)	262, 990, 1321, 1330
EarI	CTCTTC	4 cut(s)	262, 990, 1321, 1330
EciI	GGCGGA	1 cut(s)	677
Eco130I	CCWWGG	3 cut(s)	101, 750, 884
Eco147I	AGGCCT	2 cut(s)	145, 770
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	2 cut(s)	88, 297
Eco47I	GGWCC	3 cut(s)	581, 1163, 1357
Eco47III	AGCGCT	1 cut(s)	946
Eco57I	CTGAAG	2 cut(s)	503, 759
EcoRI	GAATTC	1 cut(s)	1285
EcoRII	CCWGG	4 cut(s)	794, 908, 1165, 1359
EcoT14I	CCWWGG	3 cut(s)	101, 750, 884
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	3 cut(s)	101, 750, 884
FaeI	CATG	3 cut(s)	105, 754, 893
FaiI	YATR	9 cut(s)	103, 305, 347, 752, 891, 956, 987, 1124, 1251
FalI	AAGNNNNNCTT	4 cut(s)	1122, 1154, 1331, 1363
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	3 cut(s)	101, 750, 889
FokI	GGATG	4 cut(s)	228, 469, 1196, 1317
FriOI	GRGCYC	1 cut(s)	167
GlaI	GCGC	1 cut(s)	946
GsaI	CCCAGC	1 cut(s)	415
GsuI	CTGGAG	2 cut(s)	1046, 1101
HaeII	RGCGCY	1 cut(s)	948
HaeIII	GGCC	3 cut(s)	145, 595, 770
HapII	CCGG	2 cut(s)	111, 611
HgaI	GACGC	2 cut(s)	123, 542
HhaI	GCGC	1 cut(s)	947
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	105, 754, 893
Hin6I	GCGC	1 cut(s)	945
HinP1I	GCGC	1 cut(s)	945
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	6 cut(s)	407, 485, 547, 706, 1028, 1279
HpaII	CCGG	2 cut(s)	111, 611
HphI	GGTGA	5 cut(s)	186, 348, 502, 574, 1075
Hpy166II	GTNNAC	1 cut(s)	1094
Hpy188I	TCNGA	4 cut(s)	482, 838, 861, 1284
Hpy188III	TCNNGA	6 cut(s)	91, 151, 160, 937, 1020, 1302
Hpy8I	GTNNAC	1 cut(s)	1094
Hpy99I	CGWCG	2 cut(s)	139, 290
HpyAV	CCTTC	7 cut(s)	97, 207, 231, 701, 736, 781, 1348
HpyCH4V	TGCA	5 cut(s)	310, 376, 1145, 1154, 1210
HpyF3I	CTNAG	3 cut(s)	30, 387, 810
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	105, 754, 893
HspAI	GCGC	1 cut(s)	945
Kzo9I	GATC	2 cut(s)	205, 1304
LmnI	GCTCC	2 cut(s)	241, 862
LweI	GCATC	2 cut(s)	297, 733
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	2 cut(s)	207, 1306
MboI	GATC	2 cut(s)	205, 1304
MflI	RGATCY	1 cut(s)	1304
MhlI	GDGCHC	1 cut(s)	167
MlyI	GAGTC	4 cut(s)	494, 556, 700, 1037
MmeI	TCCRAC	1 cut(s)	460
MseI	TTAA	4 cut(s)	539, 1140, 1257, 1263
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	737, 869
MspI	CCGG	2 cut(s)	111, 611
MspR9I	CCNGG	6 cut(s)	111, 611, 796, 910, 1167, 1361
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	4 cut(s)	796, 910, 1167, 1361
MvnI	CGCG	1 cut(s)	765
NciI	CCSGG	2 cut(s)	111, 611
NcoI	CCATGG	2 cut(s)	101, 750
NdeII	GATC	2 cut(s)	205, 1304
NlaIII	CATG	3 cut(s)	105, 754, 893
NlaIV	GGNNCC	5 cut(s)	582, 724, 914, 1164, 1312
NmuCI	GTSAC	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	950
PceI	AGGCCT	2 cut(s)	145, 770
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	407, 1279
PleI	GAGTC	4 cut(s)	493, 555, 700, 1036
PpsI	GAGTC	4 cut(s)	493, 555, 700, 1036
PshAI	GACNNNNGTC	1 cut(s)	1027
PshBI	ATTAAT	1 cut(s)	1263
Psp6I	CCWGG	4 cut(s)	794, 908, 1165, 1359
PspFI	CCCAGC	1 cut(s)	411
PspGI	CCWGG	4 cut(s)	794, 908, 1165, 1359
PspN4I	GGNNCC	5 cut(s)	582, 724, 914, 1164, 1312
PspPI	GGNCC	3 cut(s)	581, 1163, 1357
PstI	CTGCAG	1 cut(s)	1156
PstNI	CAGNNNCTG	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	1304
PvuII	CAGCTG	2 cut(s)	737, 869
RsaI	GTAC	1 cut(s)	1006
RsaNI	GTAC	1 cut(s)	1005
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	539, 1140, 1257, 1263
Sau3AI	GATC	2 cut(s)	205, 1304
Sau96I	GGNCC	3 cut(s)	581, 1163, 1357
SbfI	CCTGCAGG	1 cut(s)	1156
ScaI	AGTACT	1 cut(s)	1006
SchI	GAGTC	4 cut(s)	494, 556, 700, 1037
ScrFI	CCNGG	6 cut(s)	111, 611, 796, 910, 1167, 1361
SdaI	CCTGCAGG	1 cut(s)	1156
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	2 cut(s)	297, 733
SfcI	CTRYAG	1 cut(s)	1152
SfuI	TTCGAA	1 cut(s)	950
SinI	GGWCC	3 cut(s)	581, 1163, 1357
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse8387I	CCTGCAGG	1 cut(s)	1156
SseBI	AGGCCT	2 cut(s)	145, 770
SsiI	CCGC	8 cut(s)	45, 98, 470, 688, 747, 763, 916, 971
StuI	AGGCCT	2 cut(s)	145, 770
StyD4I	CCNGG	6 cut(s)	109, 609, 794, 908, 1165, 1359
StyI	CCWWGG	3 cut(s)	101, 750, 884
TaqI	TCGA	9 cut(s)	90, 137, 285, 604, 697, 729, 950, 1031, 1071
TatI	WGTACW	1 cut(s)	1004
TauI	GCSGC	1 cut(s)	749
TfiI	GAWTC	2 cut(s)	407, 1279
Tru1I	TTAA	4 cut(s)	539, 1140, 1257, 1263
Tru9I	TTAA	4 cut(s)	539, 1140, 1257, 1263
TseFI	GTSAC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	2 cut(s)	584, 840
VpaK11BI	GGWCC	3 cut(s)	581, 1163, 1357
VspI	ATTAAT	1 cut(s)	1263
XapI	RAATTY	3 cut(s)	337, 541, 1285
ZrmI	AGTACT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.