Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

9704632 .. 9706217

Gene Structure 1586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGTTTTGATGATACATGCAACACAGGTCTTGTTCTTGGATTAGGTCCCTCACCAATTCCAAATAATTACAATAGTACCATCAGACAATCCTCCGTTTACAAGCTCGAGCCGTCGTTGACTCTATGCCTCTCGGGCGATCCCTCGGTTACCGTGGTGACCGGAGCTGACCAGCTATGCCGTCAGACGTCATCTCACAGCGGAGTCTCTTCTTTCTCAAGCGGGAGGGTGGTGAAAAGAGAGAGAGACGGTGGCGAAGAGTCGCCGGAGGAGGAAGAGATGACGGAGAGAGTTATAAGTGATTACCATGAAGATGAAGAAGGTATTAGTGCTAGAAAAAAACTTAGGCTTACGAAACAACAATCTGCTCTTCTTGAGGAAAGCTTCAAGGATCATAGCACCCTTAATCCCAAACAAAAGCAAGTTCTGGCTAGACAGCTGAATCTAAGGCCTAGACAAGTTGAAGTATGGTTTCAAAATAGAAGAGCCAGGACAAAGCTGAAGCAAACAGAAGTAGATTGTGAGTTTTTGAAGAAGTGTTGTGAAACATTAGCAGATGAGAACATAAGACTTCAGAAAGAGATTCAAGAACTCAAAACCCTAAAATTGACTCAGCCCTTTTACATGCACATGCCTGCATCGACTCTAACGAAGTGTCCTTCTTGTGAGAGAATCGGCGGCGGCGGCGGGGGTAATGGAGGAGGAGGTGGCGGCAGCGGGGCTACCGCGGTGATTGTAGATGGAAGTACGGCCAAAGGAGCTTTCTCTATCTCCTCAAAGCCTCACTTCTTCAACCCTTTTACTAACCCATCTGCAGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ Homeobox

Protein Analysis

274

Amino Acids

29.88

Weight (kDa)

7.54

Isoelectric Point (pI)

58.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	112 - 166	2.1e-15	Homeodomain
HALZ	PF02183	168 - 201	2.8e-09	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	296
AatII	GACGTC	1 cut(s)	191
AccII	CGCG	1 cut(s)	728
AclWI	GGATC	2 cut(s)	134, 399
AcoI	YGGCCR	1 cut(s)	750
AcuI	CTGAAG	2 cut(s)	521, 557
AcyI	GRCGYC	1 cut(s)	188
AfaI	GTAC	2 cut(s)	79, 748
AgsI	TTSAA	6 cut(s)	388, 464, 476, 532, 587, 793
AjnI	CCWGG	1 cut(s)	488
AjuI	GAANNNNNNNTTGG	2 cut(s)	746, 778
AluBI	AGCT	8 cut(s)	106, 167, 175, 384, 439, 499, 761, 818
AluI	AGCT	8 cut(s)	106, 167, 175, 384, 439, 499, 761, 818
Alw26I	GTCTC	2 cut(s)	211, 240
AlwI	GGATC	2 cut(s)	134, 399
Ama87I	CYCGRG	2 cut(s)	107, 133
AoxI	GGCC	2 cut(s)	449, 750
ApeKI	GCWGC	2 cut(s)	714, 815
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	4 cut(s)	45, 169, 244, 742
AvaI	CYCGRG	2 cut(s)	107, 133
AvaII	GGWCC	1 cut(s)	47
BaeI	ACNNNNGTAYC	2 cut(s)	61, 94
BbvI	GCAGC	1 cut(s)	726
BccI	CCATC	3 cut(s)	89, 734, 817
BceAI	ACGGC	3 cut(s)	97, 165, 765
BciT130I	CCWGG	1 cut(s)	490
BcoDI	GTCTC	2 cut(s)	211, 240
BfaI	CTAG	3 cut(s)	333, 432, 453
BfmI	CTRYAG	1 cut(s)	813
BglI	GCCNNNNNGGC	1 cut(s)	135
BisI	GCNGC	6 cut(s)	679, 682, 685, 712, 715, 816
BlsI	GCNGC	6 cut(s)	680, 683, 686, 713, 716, 817
Bme1390I	CCNGG	1 cut(s)	490
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	2 cut(s)	107, 133
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	1 cut(s)	490
BmsI	GCATC	1 cut(s)	647
BpuEI	CTTGAG	2 cut(s)	202, 395
BsaHI	GRCGYC	1 cut(s)	188
BsaJI	CCNNGG	3 cut(s)	144, 153, 726
BsaWI	WCCGGW	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	144, 153, 726
BseMII	CTCAG	1 cut(s)	626
BseRI	GAGGAG	4 cut(s)	284, 714, 717, 763
BseXI	GCAGC	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	728
BshFI	GGCC	2 cut(s)	451, 752
BsiHKCI	CYCGRG	2 cut(s)	107, 133
BsiSI	CCGG	2 cut(s)	162, 266
BslFI	GGGAC	1 cut(s)	33
BsmAI	GTCTC	2 cut(s)	211, 240
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	451, 752
BsoBI	CYCGRG	2 cut(s)	107, 133
Bsp143I	GATC	2 cut(s)	139, 391
BspANI	GGCC	2 cut(s)	451, 752
BspCNI	CTCAG	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	728
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	2 cut(s)	134, 399
BspQI	GCTCTTC	2 cut(s)	375, 478
BssECI	CCNNGG	3 cut(s)	144, 153, 726
BssMI	GATC	2 cut(s)	139, 391
BssNI	GRCGYC	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	154, 251
Bst6I	CTCTTC	5 cut(s)	214, 252, 270, 375, 478
BstACI	GRCGYC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	636
BstDEI	CTNAG	3 cut(s)	344, 446, 612
BstDSI	CCRYGG	2 cut(s)	153, 726
BstEII	GGTNACC	2 cut(s)	148, 157
BstFNI	CGCG	1 cut(s)	728
BstKTI	GATC	2 cut(s)	142, 394
BstMAI	GTCTC	2 cut(s)	211, 240
BstMBI	GATC	2 cut(s)	139, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 684, 758
BstNI	CCWGG	1 cut(s)	490
BstNSI	RCATGY	3 cut(s)	21, 628, 634
BstPI	GGTNACC	2 cut(s)	148, 157
BstSCI	CCNGG	1 cut(s)	488
BstSFI	CTRYAG	1 cut(s)	813
BstUI	CGCG	1 cut(s)	728
BstV1I	GCAGC	1 cut(s)	726
BsuRI	GGCC	2 cut(s)	451, 752
BtgI	CCRYGG	2 cut(s)	153, 726
Cac8I	GCNNGC	1 cut(s)	636
Cfr13I	GGNCC	1 cut(s)	47
Cfr42I	CCGCGG	1 cut(s)	729
Csp6I	GTAC	2 cut(s)	78, 747
CviAII	CATG	4 cut(s)	18, 308, 625, 631
CviQI	GTAC	2 cut(s)	78, 747
DdeI	CTNAG	3 cut(s)	344, 446, 612
DpnI	GATC	2 cut(s)	141, 393
DpnII	GATC	2 cut(s)	139, 391
EaeI	YGGCCR	1 cut(s)	750
Eam1104I	CTCTTC	5 cut(s)	214, 252, 270, 375, 478
EarI	CTCTTC	5 cut(s)	214, 252, 270, 375, 478
Eco147I	AGGCCT	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	521, 557
Eco88I	CYCGRG	2 cut(s)	107, 133
Eco91I	GGTNACC	2 cut(s)	148, 157
EcoO109I	RGGNCCY	1 cut(s)	47
EcoO65I	GGTNACC	2 cut(s)	148, 157
EcoRII	CCWGG	1 cut(s)	488
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	4 cut(s)	21, 311, 628, 634
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	4 cut(s)	17, 307, 624, 630
FauI	CCCGC	3 cut(s)	215, 680, 710
Fnu4HI	GCNGC	6 cut(s)	679, 682, 685, 712, 715, 816
Fsp4HI	GCNGC	6 cut(s)	679, 682, 685, 712, 715, 816
FspBI	CTAG	3 cut(s)	333, 432, 453
GluI	GCNGC	6 cut(s)	679, 682, 685, 712, 715, 816
HaeIII	GGCC	2 cut(s)	451, 752
HapII	CCGG	2 cut(s)	162, 266
Hin1I	GRCGYC	1 cut(s)	188
Hin1II	CATG	4 cut(s)	21, 311, 628, 634
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	8 cut(s)	121, 204, 260, 442, 583, 610, 643, 672
HpaII	CCGG	2 cut(s)	162, 266
HphI	GGTGA	4 cut(s)	45, 169, 244, 742
Hpy166II	GTNNAC	2 cut(s)	100, 120
Hpy188I	TCNGA	3 cut(s)	86, 186, 576
Hpy188III	TCNNGA	2 cut(s)	374, 587
Hpy8I	GTNNAC	2 cut(s)	100, 120
Hpy99I	CGWCG	1 cut(s)	118
HpyAV	CCTTC	2 cut(s)	314, 669
HpyCH4III	ACNGT	2 cut(s)	154, 251
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	21, 628, 638, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 684, 758
HpyF3I	CTNAG	3 cut(s)	344, 446, 612
HpySE526I	ACGT	1 cut(s)	188
Hsp92I	GRCGYC	1 cut(s)	188
Hsp92II	CATG	4 cut(s)	21, 311, 628, 634
KspI	CCGCGG	1 cut(s)	729
Kzo9I	GATC	2 cut(s)	139, 391
LguI	GCTCTTC	2 cut(s)	375, 478
LmnI	GCTCC	2 cut(s)	164, 758
LpnPI	CCDG	8 cut(s)	12, 175, 185, 279, 413, 475, 502, 648
Lsp1109I	GCAGC	1 cut(s)	726
LweI	GCATC	1 cut(s)	647
MaeI	CTAG	3 cut(s)	333, 432, 453
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	2 cut(s)	148, 157
MalI	GATC	2 cut(s)	141, 393
MboI	GATC	2 cut(s)	139, 391
MboII	GAAGA	9 cut(s)	201, 269, 287, 323, 329, 362, 495, 544, 781
MluCI	AATT	3 cut(s)	57, 67, 605
MlyI	GAGTC	5 cut(s)	115, 213, 269, 604, 637
MseI	TTAA	1 cut(s)	405
MslI	CAYNNNNRTG	2 cut(s)	312, 629
MspA1I	CMGCKG	4 cut(s)	201, 439, 717, 728
MspI	CCGG	2 cut(s)	162, 266
MspR9I	CCNGG	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	1 cut(s)	728
MwoI	GCNNNNNNNGC	3 cut(s)	135, 684, 758
NdeII	GATC	2 cut(s)	139, 391
NlaIII	CATG	4 cut(s)	21, 311, 628, 634
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	3 cut(s)	21, 628, 634
PaeR7I	CTCGAG	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	451
PciSI	GCTCTTC	2 cut(s)	375, 478
PcsI	WCGNNNNNNNCGW	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	442, 583, 672
PkrI	GCNGC	6 cut(s)	680, 683, 686, 713, 716, 817
PleI	GAGTC	5 cut(s)	115, 212, 268, 604, 637
PpsI	GAGTC	5 cut(s)	115, 212, 268, 604, 637
PpuMI	RGGWCCY	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	488
PspEI	GGTNACC	2 cut(s)	148, 157
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	47
PspPPI	RGGWCCY	1 cut(s)	47
PspXI	VCTCGAGB	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	817
PvuII	CAGCTG	1 cut(s)	439
RsaI	GTAC	2 cut(s)	79, 748
RsaNI	GTAC	2 cut(s)	78, 747
RseI	CAYNNNNRTG	2 cut(s)	312, 629
SacII	CCGCGG	1 cut(s)	729
SapI	GCTCTTC	2 cut(s)	375, 478
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	6 cut(s)	679, 682, 685, 712, 715, 816
Sau3AI	GATC	2 cut(s)	139, 391
Sau96I	GGNCC	1 cut(s)	47
SchI	GAGTC	5 cut(s)	115, 213, 269, 604, 637
ScrFI	CCNGG	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	647
SfcI	CTRYAG	1 cut(s)	813
Sfr274I	CTCGAG	1 cut(s)	107
Sfr303I	CCGCGG	1 cut(s)	729
SgrBI	CCGCGG	1 cut(s)	729
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	107
SmiMI	CAYNNNNRTG	2 cut(s)	312, 629
SmlI	CTYRAG	3 cut(s)	107, 217, 374
SmoI	CTYRAG	3 cut(s)	107, 217, 374
Sse9I	AATT	3 cut(s)	57, 67, 605
SseBI	AGGCCT	1 cut(s)	451
SspMI	CTAG	3 cut(s)	333, 432, 453
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	1 cut(s)	488
TaaI	ACNGT	2 cut(s)	154, 251
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	2 cut(s)	108, 641
TasI	AATT	3 cut(s)	57, 67, 605
TauI	GCSGC	4 cut(s)	681, 684, 687, 714
TfiI	GAWTC	3 cut(s)	442, 583, 672
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	714, 815
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	324, 330
TspGWI	ACGGA	2 cut(s)	85, 299
VpaK11BI	GGWCC	1 cut(s)	47
XceI	RCATGY	3 cut(s)	21, 628, 634
XhoI	CTCGAG	1 cut(s)	107
XspI	CTAG	3 cut(s)	333, 432, 453
ZraI	GACGTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.