Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003573

Physical Location & Seq

Genomic Coordinates Reverse (-)

24576037 .. 24577385

Gene Structure 1349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGGTTTGGATGAGCTTGGCCTCAGCCTAGGCTGCCATGACAAAGCAGCAAACCACGATCGTGATCATCATCACCAAAACCAGAAGAAACCACACTTGAAATTTGACCAACTACTGCCGTCTGATCTCACGCTAGGACCATCAGATGAGGCAGGACCTAGAGGGTCTAATTCTTCTTCTCCCAGCGGAGCCATTTCATCGTTTTCTAACTCGTCTAGTTTCAAGAGGGTAGACAGAGATATACCGGGTTCCGGTGAAGAGGTAGAGAGAGTAAGCGAGGAGCTATATGAAGATCAGGCAGGGAGTCCCAGAAAGAAACTCAGACTTACAAAAGAACAATCTGCCACATTAGAAGACACCTTCAAACAACACACCACTCTCAATCCTAAACAAAAACTAGAGCTGGCCAGAAATCTAAGTTTACGGCCGCGACAGGTAGAAGTTTGGTTCCAGAACAGAAGGGCGAGGACTAAGTTGAAGCAAACTGAAGCGGATTGCGAGCTGTTAAAGAGATGTTGCGAGACTCTCAAAGAAGAGAACAGGAGGCTACACAAGGAGCTGCAAGAGCTCCAGTTAATGAAACAGACACCAACGGCGCCATTTTACATGCAGTTTCCGACGGCTACCCTCACCGTGTGCCCTTCCTGCAGTGAAAGAATTGTCAACGGTTCAAGCGCTGTTGCTGGTGATGATCATCACCTTGGAGTATCCAAGCCTCATCACCTTCTCAACCCCTTTACTCATCCATCTACAGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0033993 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HALZ HD-ZIP_N Homeobox

Protein Analysis

254

Amino Acids

28.41

Weight (kDa)

7.69

Isoelectric Point (pI)

51.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	104 - 158	1.4e-15	Homeodomain
HALZ	PF02183	160 - 194	8.5e-09	Homeobox associated leucine zipper

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22800 AT4G37790
fragaria_vesca	FvH4_1g18530 FvH4_2g32410
malus_domestica	MD02G1192800.v1.1 MD08G1075400.v1.1 MD08G1075500.v1.1 MD15G1062900.v1.1 MD15G1302900.v1.1
prunus_persica	Prupe.1G416800_v2.0.a1 Prupe.6G213800_v2.0.a1
pyrus_communis	pycom02g15660 pycom08g06230 pycom15g05950 pycom15g26620
rosa_chinensis	RchiOBHm_Chr2g0109191 RchiOBHm_Chr6g0310291
rosa_laevigata	RLG00000010494 RLG00000017725
rosa_multiflora	Rmu_sc0002348.1_g000019 Rmu_sc0002348.1_g000020 Rmu_sc0009436.1_g000008
rosa_roxburghii	Rroxscaffold_2G00134400 Rroxscaffold_7G00158690
rosa_rugosa	Rorug02G0158300 Rorug06G0378500
rosa_samantha	Rh2AG209900 Rh2BG220300 Rh2CG212300 Rh2DG216100 Rh6AG492900 Rh6BG502500 Rh6CG507500 Rh6DG493600
rosa_wichuraiana	Rw6G042890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	430
AciI	CCGC	3 cut(s)	186, 428, 491
AcoI	YGGCCR	2 cut(s)	405, 425
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	636
AfeI	AGCGCT	1 cut(s)	676
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	100, 223, 364, 478, 672
AleI	CACNNNNGTG	1 cut(s)	60
AluBI	AGCT	7 cut(s)	16, 283, 403, 502, 559, 568, 755
AluI	AGCT	7 cut(s)	16, 283, 403, 502, 559, 568, 755
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	515
Aor51HI	AGCGCT	1 cut(s)	676
AoxI	GGCC	3 cut(s)	19, 405, 425
ApeKI	GCWGC	3 cut(s)	33, 47, 559
ApoI	RAATTY	1 cut(s)	101
AspA2I	CCTAGG	1 cut(s)	28
AspLEI	GCGC	2 cut(s)	598, 677
AspS9I	GGNCC	2 cut(s)	137, 155
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	6 cut(s)	65, 266, 622, 689, 698, 713
AvaII	GGWCC	2 cut(s)	137, 155
AvrII	CCTAGG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	570
BbvCI	CCTCAGC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	20, 59, 546
BccI	CCATC	2 cut(s)	148, 754
BceAI	ACGGC	4 cut(s)	103, 440, 609, 636
BciVI	GTATCC	1 cut(s)	718
BclI	TGATCA	2 cut(s)	64, 691
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	515
BfaI	CTAG	6 cut(s)	29, 134, 159, 216, 398, 760
BfmI	CTRYAG	2 cut(s)	646, 750
BfoI	RGCGCY	2 cut(s)	599, 678
BfuI	GTATCC	1 cut(s)	718
BisI	GCNGC	4 cut(s)	34, 48, 428, 560
BlnI	CCTAGG	1 cut(s)	28
BlsI	GCNGC	4 cut(s)	35, 49, 429, 561
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	2 cut(s)	137, 155
BmgT120I	GGNCC	2 cut(s)	137, 155
BmiI	GGNNCC	4 cut(s)	190, 250, 449, 597
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	554
Bpu10I	CCTNAGC	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	246
BsaBI	GATNNNNATC	3 cut(s)	63, 69, 693
BsaHI	GRCGYC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	28, 700
BsaWI	WCCGGW	1 cut(s)	251
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	571
Bse8I	GATNNNNATC	3 cut(s)	63, 69, 693
BseDI	CCNNGG	2 cut(s)	28, 700
BseGI	GGATG	2 cut(s)	16, 742
BseJI	GATNNNNATC	3 cut(s)	63, 69, 693
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	37, 334
BseNI	ACTGG	1 cut(s)	571
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	641
BseX3I	CGGCCG	1 cut(s)	425
BseXI	GCAGC	3 cut(s)	20, 59, 546
BseYI	CCCAGC	1 cut(s)	182
Bsh1236I	CGCG	1 cut(s)	430
Bsh1285I	CGRYCG	2 cut(s)	61, 428
BshFI	GGCC	3 cut(s)	21, 407, 427
BshNI	GGYRCC	1 cut(s)	595
BsiEI	CGRYCG	2 cut(s)	61, 428
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	245, 252
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	515
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	21, 407, 427
Bsp1286I	GDGCHC	2 cut(s)	570, 641
Bsp143I	GATC	5 cut(s)	58, 64, 124, 292, 691
BspACI	CCGC	3 cut(s)	186, 428, 491
BspANI	GGCC	3 cut(s)	21, 407, 427
BspCNI	CTCAG	2 cut(s)	36, 333
BspFNI	CGCG	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	190, 250, 449, 597
BspMAI	CTGCAG	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	595
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	2 cut(s)	28, 700
BssMI	GATC	5 cut(s)	58, 64, 124, 292, 691
BssNI	GRCGYC	1 cut(s)	596
BssT1I	CCWWGG	2 cut(s)	28, 700
Bst4CI	ACNGT	2 cut(s)	634, 668
Bst6I	CTCTTC	2 cut(s)	252, 528
BstACI	GRCGYC	1 cut(s)	596
BstC8I	GCNNGC	3 cut(s)	405, 500, 757
BstDEI	CTNAG	4 cut(s)	23, 320, 416, 471
BstF5I	GGATG	2 cut(s)	16, 742
BstFNI	CGCG	1 cut(s)	430
BstH2I	RGCGCY	2 cut(s)	599, 678
BstHHI	GCGC	2 cut(s)	598, 677
BstKTI	GATC	5 cut(s)	61, 67, 127, 295, 694
BstMAI	GTCTC	1 cut(s)	515
BstMBI	GATC	5 cut(s)	58, 64, 124, 292, 691
BstMCI	CGRYCG	2 cut(s)	61, 428
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 565, 645
BstNSI	RCATGY	1 cut(s)	610
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	2 cut(s)	646, 750
BstSLI	GKGCMC	1 cut(s)	641
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	3 cut(s)	20, 59, 546
BstV2I	GAAGAC	1 cut(s)	360
BstZI	CGGCCG	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	21, 407, 427
BtsCI	GGATG	2 cut(s)	16, 742
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	1 cut(s)	655
Cac8I	GCNNGC	3 cut(s)	405, 500, 757
CfoI	GCGC	2 cut(s)	598, 677
Cfr13I	GGNCC	2 cut(s)	137, 155
CviAII	CATG	2 cut(s)	38, 607
DdeI	CTNAG	4 cut(s)	23, 320, 416, 471
DinI	GGCGCC	1 cut(s)	597
DpnI	GATC	5 cut(s)	60, 66, 126, 294, 693
DpnII	GATC	5 cut(s)	58, 64, 124, 292, 691
DraIII	CACNNNGTG	1 cut(s)	636
EaeI	YGGCCR	2 cut(s)	405, 425
EagI	CGGCCG	1 cut(s)	425
Eam1104I	CTCTTC	2 cut(s)	252, 528
EarI	CTCTTC	2 cut(s)	252, 528
Ecl136II	GAGCTC	1 cut(s)	568
EclXI	CGGCCG	1 cut(s)	425
Eco130I	CCWWGG	2 cut(s)	28, 700
Eco24I	GRGCYC	1 cut(s)	570
Eco47I	GGWCC	2 cut(s)	137, 155
Eco47III	AGCGCT	1 cut(s)	676
Eco52I	CGGCCG	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	568
EcoO109I	RGGNCCY	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	28, 700
EcoT38I	GRGCYC	1 cut(s)	570
EgeI	GGCGCC	1 cut(s)	597
EheI	GGCGCC	1 cut(s)	597
ErhI	CCWWGG	2 cut(s)	28, 700
FaeI	CATG	2 cut(s)	41, 610
FaiI	YATR	5 cut(s)	39, 242, 286, 288, 608
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	37, 606
FbaI	TGATCA	2 cut(s)	64, 691
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	34, 48, 428, 560
FokI	GGATG	2 cut(s)	23, 729
FriOI	GRGCYC	1 cut(s)	570
Fsp4HI	GCNGC	4 cut(s)	34, 48, 428, 560
FspBI	CTAG	6 cut(s)	29, 134, 159, 216, 398, 760
GlaI	GCGC	2 cut(s)	597, 676
GluI	GCNGC	4 cut(s)	34, 48, 428, 560
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	554
HaeII	RGCGCY	2 cut(s)	599, 678
HaeIII	GGCC	3 cut(s)	21, 407, 427
HapII	CCGG	2 cut(s)	245, 252
HhaI	GCGC	2 cut(s)	598, 677
Hin1I	GRCGYC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	41, 610
Hin6I	GCGC	2 cut(s)	596, 675
HinP1I	GCGC	2 cut(s)	596, 675
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	2 cut(s)	304, 523
HpaII	CCGG	2 cut(s)	245, 252
HphI	GGTGA	6 cut(s)	65, 266, 622, 689, 698, 713
Hpy166II	GTNNAC	3 cut(s)	232, 422, 664
Hpy188I	TCNGA	4 cut(s)	124, 145, 323, 618
Hpy188III	TCNNGA	3 cut(s)	62, 223, 451
Hpy8I	GTNNAC	3 cut(s)	232, 422, 664
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	4 cut(s)	370, 453, 651, 734
HpyCH4III	ACNGT	2 cut(s)	634, 668
HpyCH4V	TGCA	3 cut(s)	562, 610, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 565, 645
HpyF3I	CTNAG	4 cut(s)	23, 320, 416, 471
Hsp92I	GRCGYC	1 cut(s)	596
Hsp92II	CATG	2 cut(s)	41, 610
HspAI	GCGC	2 cut(s)	596, 675
KasI	GGCGCC	1 cut(s)	595
Ksp22I	TGATCA	2 cut(s)	64, 691
Kzo9I	GATC	5 cut(s)	58, 64, 124, 292, 691
LmnI	GCTCC	4 cut(s)	188, 280, 556, 573
Lsp1109I	GCAGC	3 cut(s)	20, 59, 546
MaeI	CTAG	6 cut(s)	29, 134, 159, 216, 398, 760
MalI	GATC	5 cut(s)	60, 66, 126, 294, 693
MboI	GATC	5 cut(s)	58, 64, 124, 292, 691
MboII	GAAGA	7 cut(s)	97, 165, 168, 269, 302, 365, 545
MhlI	GDGCHC	2 cut(s)	570, 641
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	3 cut(s)	101, 169, 657
MluNI	TGGCCA	1 cut(s)	407
Mly113I	GGCGCC	1 cut(s)	596
MlyI	GAGTC	2 cut(s)	313, 517
MmeI	TCCRAC	1 cut(s)	641
Mox20I	TGGCCA	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	2 cut(s)	506, 575
MslI	CAYNNNNRTG	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	2 cut(s)	245, 252
MspR9I	CCNGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	33, 565, 645
NarI	GGCGCC	1 cut(s)	596
NciI	CCSGG	1 cut(s)	246
NdeII	GATC	5 cut(s)	58, 64, 124, 292, 691
NlaIII	CATG	2 cut(s)	41, 610
NlaIV	GGNNCC	4 cut(s)	190, 250, 449, 597
NspI	RCATGY	1 cut(s)	610
OliI	CACNNNNGTG	1 cut(s)	60
PkrI	GCNGC	4 cut(s)	35, 49, 429, 561
Ple19I	CGATCG	1 cut(s)	61
PleI	GAGTC	2 cut(s)	312, 517
PluTI	GGCGCC	1 cut(s)	599
PpsI	GAGTC	2 cut(s)	312, 517
PpuMI	RGGWCCY	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	155
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	4 cut(s)	190, 250, 449, 597
PspPI	GGNCC	2 cut(s)	137, 155
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	650
PvuI	CGATCG	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	570
SaqAI	TTAA	2 cut(s)	506, 575
SatI	GCNGC	4 cut(s)	34, 48, 428, 560
Sau3AI	GATC	5 cut(s)	58, 64, 124, 292, 691
Sau96I	GGNCC	2 cut(s)	137, 155
SchI	GAGTC	2 cut(s)	313, 517
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	570, 641
SfcI	CTRYAG	2 cut(s)	646, 750
SfoI	GGCGCC	1 cut(s)	597
SinI	GGWCC	2 cut(s)	137, 155
SmiMI	CAYNNNNRTG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	101, 169, 657
SsiI	CCGC	3 cut(s)	186, 428, 491
SspDI	GGCGCC	1 cut(s)	595
SspMI	CTAG	6 cut(s)	29, 134, 159, 216, 398, 760
SstI	GAGCTC	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	28, 700
TaaI	ACNGT	2 cut(s)	634, 668
TasI	AATT	3 cut(s)	101, 169, 657
TauI	GCSGC	1 cut(s)	430
Tru1I	TTAA	2 cut(s)	506, 575
Tru9I	TTAA	2 cut(s)	506, 575
TscAI	CASTG	1 cut(s)	655
TseI	GCWGC	3 cut(s)	33, 47, 559
TspDTI	ATGAA	3 cut(s)	186, 303, 593
TspRI	CASTG	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	137, 155
XapI	RAATTY	1 cut(s)	101
XceI	RCATGY	1 cut(s)	610
XmaJI	CCTAGG	1 cut(s)	28
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	6 cut(s)	29, 134, 159, 216, 398, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.