Prupe.1G416800_v2.0.a1

Homeobox-leucine zipper protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0003573
Physical Location & Seq
Reverse (-)
36184542 .. 36186251
1710 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G416800.1

Sequence Viewer

Length: 936 bp
ATGAGTTTTGATGAAGCTTGTAACACCGGCCTTGGTCTCAGTCTAGGCTGCCGTGACAGCCCAGATCATGACCATACAAATTTGCAGGCTCCTCCTGATCATCATCATCACCATCACCAAAACACGTACAAGAACAAGCAAATACAGTTGAAATATGATCACCTATTGCCTTCTCTTACGCTCGGCCCATCGGCTGCTTCAAAGATTGAGGAGGCCGAGTCCACTGATTTGCACCAGGCAGTAGCCGCACAGGAACAGGACTCTTCTCCCTGCAGCGGCGCCTTTTCATCTTTTTCTAACTCGTCAAGTTTCAAGAGGGACAGAGAGTTGGGAGGTGAAGAGATAGAGGTAGAGGTAGAGGTAGAGGTAGAGGTAGAGGAAGAGAGAGTGGTGAATATTACTTCCTCAAGAGCAAGCGAGGAGTTATATGAACAAGATCATGAGGGCAGCCCCAGAAAGAAGCTCAGGCTTTCAAAAGAACAATCTGCCACTTTGGAAGACAGCTTCAGAGAACACACCACCCTCAATCCCAAGCAAAAGCAAGACCTGGCAAGAAAGCTAAATCTACGGCCGCGACAAGTGGAAGTCTGGTTCCAAAACAGGAGGGCCAGGACCAAGTTGAAGCAAACTGAAGCGGATTGTGAGTTGTTGAAAAAGTGTTGTGAGACGCTGAAAGAAGAGAACAGAAGGCTACACAAGGAGCTGCAAGAGCTCAAGTTAATGAAACAAACGGCAACAGCAGCAGCAGCAGTACCACCCTTTTACATGCAGTTTCCAACAGCCACTCTCACCATGTGCCCTTCTTGTGAGAAAATCTGCAACGGCGGTGACCACCATAATCATCATGGGTCGTCGACGAGTTCTTTTTTGATTGGATCGAAGCCGGCTCACTTGATCTTCAACCCCTTTAGCACCCATCCATCTACAGCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HALZ Homeobox

Protein Analysis

312

Amino Acids

35.03

Weight (kDa)

6.09

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 1 cut(s) 854
AccII CGCG 1 cut(s) 574
AciI CCGC 5 cut(s) 246, 276, 572, 635, 825
AclWI GGATC 1 cut(s) 883
AcoI YGGCCR 1 cut(s) 569
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 2 cut(s) 490, 651
AcyI GRCGYC 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 795
AfaI GTAC 2 cut(s) 128, 753
AfiI CCNNNNNNNGG 1 cut(s) 275
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 7 cut(s) 151, 201, 313, 474, 622, 652, 901
AjnI CCWGG 3 cut(s) 234, 546, 608
AloI GAACNNNNNNTCC 2 cut(s) 575, 607
AluBI AGCT 7 cut(s) 17, 463, 504, 559, 703, 712, 929
AluI AGCT 7 cut(s) 17, 463, 504, 559, 703, 712, 929
Alw21I GWGCWC 1 cut(s) 714
Alw26I GTCTC 2 cut(s) 41, 659
AlwI GGATC 1 cut(s) 883
AoxI GGCC 5 cut(s) 28, 184, 213, 569, 606
ApeKI GCWGC 8 cut(s) 48, 194, 273, 447, 703, 740, 743, 746
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 3 cut(s) 185, 606, 612
AsuHPI GGTGA 7 cut(s) 101, 107, 152, 347, 403, 781, 839
AvaII GGWCC 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 800
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 714
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 8 cut(s) 35, 181, 285, 459, 690, 752, 755, 758
BccI CCATC 4 cut(s) 120, 196, 924, 928
BceAI ACGGC 4 cut(s) 36, 584, 747, 838
BciT130I CCWGG 3 cut(s) 236, 548, 610
BclI TGATCA 2 cut(s) 97, 157
BcoDI GTCTC 2 cut(s) 41, 659
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 2 cut(s) 271, 924
BfoI RGCGCY 1 cut(s) 282
Bme1390I CCNGG 3 cut(s) 236, 548, 610
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 3 cut(s) 185, 606, 612
BmiI GGNNCC 3 cut(s) 90, 280, 593
BmrFI CCNGG 3 cut(s) 236, 548, 610
BpiI GAAGAC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 464
BpuEI CTTGAG 2 cut(s) 391, 698
BsaAI YACGTR 1 cut(s) 126
BsaBI GATNNNNATC 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 2 cut(s) 26, 883
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 3 cut(s) 236, 548, 610
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 916
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 52, 478
BseRI GAGGAG 3 cut(s) 81, 224, 434
BseSI GKGCMC 1 cut(s) 800
BseX3I CGGCCG 1 cut(s) 569
BseXI GCAGC 8 cut(s) 35, 181, 285, 459, 690, 752, 755, 758
Bsh1236I CGCG 1 cut(s) 574
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 5 cut(s) 30, 186, 215, 571, 608
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 1 cut(s) 714
BsiSI CCGG 2 cut(s) 27, 884
BslFI GGGAC 1 cut(s) 332
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 41, 659
BsmBI CGTCTC 1 cut(s) 659
BsmFI GGGAC 1 cut(s) 332
BsnI GGCC 5 cut(s) 30, 186, 215, 571, 608
Bso31I GGTCTC 1 cut(s) 41
Bsp1286I GDGCHC 2 cut(s) 714, 800
Bsp143I GATC 6 cut(s) 64, 97, 157, 436, 875, 894
BspACI CCGC 5 cut(s) 246, 276, 572, 635, 825
BspANI GGCC 5 cut(s) 30, 186, 215, 571, 608
BspCNI CTCAG 2 cut(s) 51, 477
BspFNI CGCG 1 cut(s) 574
BspHI TCATGA 2 cut(s) 67, 439
BspLI GGNNCC 3 cut(s) 90, 280, 593
BspMAI CTGCAG 1 cut(s) 275
BspPI GGATC 1 cut(s) 883
BspT107I GGYRCC 1 cut(s) 278
BspTNI GGTCTC 1 cut(s) 41
BsrFI RCCGGY 2 cut(s) 26, 883
BssAI RCCGGY 2 cut(s) 26, 883
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 6 cut(s) 64, 97, 157, 436, 875, 894
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 3 cut(s) 236, 548, 610
Bst4CI ACNGT 1 cut(s) 147
Bst6I CTCTTC 4 cut(s) 268, 333, 375, 672
BstACI GRCGYC 1 cut(s) 279
BstBAI YACGTR 1 cut(s) 126
BstC8I GCNNGC 4 cut(s) 87, 415, 885, 931
BstDEI CTNAG 2 cut(s) 38, 464
BstEII GGTNACC 1 cut(s) 827
BstF5I GGATG 1 cut(s) 916
BstFNI CGCG 1 cut(s) 574
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 6 cut(s) 67, 100, 160, 439, 878, 897
BstMAI GTCTC 2 cut(s) 41, 659
BstMBI GATC 6 cut(s) 64, 97, 157, 436, 875, 894
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 5 cut(s) 57, 245, 709, 740, 746
BstNI CCWGG 3 cut(s) 236, 548, 610
BstNSI RCATGY 1 cut(s) 769
BstPI GGTNACC 1 cut(s) 827
BstSCI CCNGG 3 cut(s) 234, 546, 608
BstSFI CTRYAG 2 cut(s) 271, 924
BstSLI GKGCMC 1 cut(s) 800
BstUI CGCG 1 cut(s) 574
BstV1I GCAGC 8 cut(s) 35, 181, 285, 459, 690, 752, 755, 758
BstV2I GAAGAC 1 cut(s) 504
BstZI CGGCCG 1 cut(s) 569
BsuRI GGCC 5 cut(s) 30, 186, 215, 571, 608
BtsCI GGATG 1 cut(s) 916
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 4 cut(s) 87, 415, 885, 931
CciI TCATGA 2 cut(s) 67, 439
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 2 cut(s) 26, 883
Cfr13I GGNCC 3 cut(s) 185, 606, 612
CseI GACGC 1 cut(s) 676
Csp6I GTAC 2 cut(s) 127, 752
CviAII CATG 5 cut(s) 68, 440, 766, 793, 845
CviQI GTAC 2 cut(s) 127, 752
DdeI CTNAG 2 cut(s) 38, 464
DinI GGCGCC 1 cut(s) 280
DpnI GATC 6 cut(s) 66, 99, 159, 438, 877, 896
DpnII GATC 6 cut(s) 64, 97, 157, 436, 875, 894
DraIII CACNNNGTG 1 cut(s) 795
EaeI YGGCCR 1 cut(s) 569
EagI CGGCCG 1 cut(s) 569
Eam1104I CTCTTC 4 cut(s) 268, 333, 375, 672
EarI CTCTTC 4 cut(s) 268, 333, 375, 672
Ecl136II GAGCTC 1 cut(s) 712
EclXI CGGCCG 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 612
Eco52I CGGCCG 1 cut(s) 569
Eco53kI GAGCTC 1 cut(s) 712
Eco57I CTGAAG 2 cut(s) 490, 651
Eco91I GGTNACC 1 cut(s) 827
EcoICRI GAGCTC 1 cut(s) 712
EcoO65I GGTNACC 1 cut(s) 827
EcoRII CCWGG 3 cut(s) 234, 546, 608
EcoT14I CCWWGG 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 714
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 659
FaeI CATG 5 cut(s) 71, 443, 769, 796, 848
FaqI GGGAC 1 cut(s) 332
FatI CATG 5 cut(s) 67, 439, 765, 792, 844
FbaI TGATCA 2 cut(s) 97, 157
FblI GTMKAC 1 cut(s) 854
FokI GGATG 1 cut(s) 903
FriOI GRGCYC 1 cut(s) 714
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 5 cut(s) 30, 186, 215, 571, 608
HapII CCGG 2 cut(s) 27, 884
HgaI GACGC 1 cut(s) 676
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 5 cut(s) 71, 443, 769, 796, 848
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 855
HindII GTYRAC 1 cut(s) 855
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 218, 260
HpaII CCGG 2 cut(s) 27, 884
HphI GGTGA 7 cut(s) 101, 107, 152, 347, 403, 781, 839
Hpy166II GTNNAC 2 cut(s) 222, 855
Hpy188I TCNGA 1 cut(s) 509
Hpy188III TCNNGA 5 cut(s) 68, 95, 313, 408, 440
Hpy8I GTNNAC 2 cut(s) 222, 855
Hpy99I CGWCG 2 cut(s) 856, 859
HpyAV CCTTC 3 cut(s) 180, 681, 810
HpyCH4III ACNGT 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 6 cut(s) 85, 232, 273, 706, 769, 819
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 245, 709, 740, 746
HpyF3I CTNAG 2 cut(s) 38, 464
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 5 cut(s) 71, 443, 769, 796, 848
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 883
KroNI GCCGGC 1 cut(s) 885
Ksp22I TGATCA 2 cut(s) 97, 157
Kzo9I GATC 6 cut(s) 64, 97, 157, 436, 875, 894
LmnI GCTCC 2 cut(s) 94, 700
Lsp1109I GCAGC 8 cut(s) 35, 181, 285, 459, 690, 752, 755, 758
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 3 cut(s) 20, 53, 827
MalI GATC 6 cut(s) 66, 99, 159, 438, 877, 896
MboI GATC 6 cut(s) 64, 97, 157, 436, 875, 894
MboII GAAGA 6 cut(s) 255, 350, 392, 509, 689, 889
MhlI GDGCHC 2 cut(s) 714, 800
MluCI AATT 1 cut(s) 79
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 2 cut(s) 227, 254
MmeI TCCRAC 1 cut(s) 800
MroNI GCCGGC 1 cut(s) 883
MseI TTAA 1 cut(s) 719
MspA1I CMGCKG 1 cut(s) 276
MspI CCGG 2 cut(s) 27, 884
MspR9I CCNGG 3 cut(s) 236, 548, 610
MvaI CCWGG 3 cut(s) 236, 548, 610
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 5 cut(s) 57, 245, 709, 740, 746
NaeI GCCGGC 1 cut(s) 885
NarI GGCGCC 1 cut(s) 279
NdeII GATC 6 cut(s) 64, 97, 157, 436, 875, 894
NgoMIV GCCGGC 1 cut(s) 883
NlaIII CATG 5 cut(s) 71, 443, 769, 796, 848
NlaIV GGNNCC 3 cut(s) 90, 280, 593
NmeAIII GCCGAG 2 cut(s) 162, 241
NmuCI GTSAC 2 cut(s) 53, 827
NspI RCATGY 1 cut(s) 769
PagI TCATGA 2 cut(s) 67, 439
PdiI GCCGGC 1 cut(s) 885
PleI GAGTC 2 cut(s) 226, 254
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 2 cut(s) 226, 254
Ppu21I YACGTR 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 234, 546, 608
PspEI GGTNACC 1 cut(s) 827
PspGI CCWGG 3 cut(s) 234, 546, 608
PspN4I GGNNCC 3 cut(s) 90, 280, 593
PspPI GGNCC 3 cut(s) 185, 606, 612
PstI CTGCAG 1 cut(s) 275
RsaI GTAC 2 cut(s) 128, 753
RsaNI GTAC 2 cut(s) 127, 752
SacI GAGCTC 1 cut(s) 714
SalI GTCGAC 1 cut(s) 853
SaqAI TTAA 1 cut(s) 719
Sau3AI GATC 6 cut(s) 64, 97, 157, 436, 875, 894
Sau96I GGNCC 3 cut(s) 185, 606, 612
SchI GAGTC 2 cut(s) 227, 254
ScrFI CCNGG 3 cut(s) 236, 548, 610
SduI GDGCHC 2 cut(s) 714, 800
SfcI CTRYAG 2 cut(s) 271, 924
SfoI GGCGCC 1 cut(s) 280
SgrDI CGTCGACG 1 cut(s) 853
SinI GGWCC 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 406, 713
SmoI CTYRAG 2 cut(s) 406, 713
Sse9I AATT 1 cut(s) 79
SsiI CCGC 5 cut(s) 246, 276, 572, 635, 825
SspDI GGCGCC 1 cut(s) 278
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 44
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 234, 546, 608
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 147
TaiI ACGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 854, 878
TasI AATT 1 cut(s) 79
TauI GCSGC 3 cut(s) 248, 279, 574
Tru1I TTAA 1 cut(s) 719
Tru9I TTAA 1 cut(s) 719
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 53, 827
TseI GCWGC 8 cut(s) 48, 194, 273, 447, 703, 740, 743, 746
Tsp45I GTSAC 2 cut(s) 53, 827
TspDTI ATGAA 4 cut(s) 27, 276, 444, 737
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XmiI GTMKAC 1 cut(s) 854
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.